data_5KKJ # _model_server_result.job_id 0CnNa0REVRG9j-BUYThwHg _model_server_result.datetime_utc '2024-11-02 05:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kkj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5KKJ # _exptl.entry_id 5KKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KKJ _cell.length_a 79.064 _cell.length_b 79.064 _cell.length_c 38.336 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc5 B NA NA . A NA 201 1_555 G O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc6 B NA NA . A NA 201 1_555 G O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KKJ _atom_sites.fract_transf_matrix[1][1] 0.012648 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 3 CL A 1 202 1 CL CL . D 3 CL A 1 203 2 CL CL . E 4 ACY A 1 204 1 ACY ACY . F 5 PE5 A 1 205 1 PE5 PE5 . G 6 HOH A 1 301 63 HOH HOH . G 6 HOH A 2 302 21 HOH HOH . G 6 HOH A 3 303 16 HOH HOH . G 6 HOH A 4 304 27 HOH HOH . G 6 HOH A 5 305 23 HOH HOH . G 6 HOH A 6 306 60 HOH HOH . G 6 HOH A 7 307 1 HOH HOH . G 6 HOH A 8 308 42 HOH HOH . G 6 HOH A 9 309 45 HOH HOH . G 6 HOH A 10 310 6 HOH HOH . G 6 HOH A 11 311 43 HOH HOH . G 6 HOH A 12 312 37 HOH HOH . G 6 HOH A 13 313 18 HOH HOH . G 6 HOH A 14 314 3 HOH HOH . G 6 HOH A 15 315 9 HOH HOH . G 6 HOH A 16 316 55 HOH HOH . G 6 HOH A 17 317 40 HOH HOH . G 6 HOH A 18 318 50 HOH HOH . G 6 HOH A 19 319 59 HOH HOH . G 6 HOH A 20 320 38 HOH HOH . G 6 HOH A 21 321 8 HOH HOH . G 6 HOH A 22 322 12 HOH HOH . G 6 HOH A 23 323 62 HOH HOH . G 6 HOH A 24 324 20 HOH HOH . G 6 HOH A 25 325 13 HOH HOH . G 6 HOH A 26 326 32 HOH HOH . G 6 HOH A 27 327 44 HOH HOH . G 6 HOH A 28 328 24 HOH HOH . G 6 HOH A 29 329 15 HOH HOH . G 6 HOH A 30 330 28 HOH HOH . G 6 HOH A 31 331 4 HOH HOH . G 6 HOH A 32 332 25 HOH HOH . G 6 HOH A 33 333 19 HOH HOH . G 6 HOH A 34 334 2 HOH HOH . G 6 HOH A 35 335 5 HOH HOH . G 6 HOH A 36 336 39 HOH HOH . G 6 HOH A 37 337 31 HOH HOH . G 6 HOH A 38 338 30 HOH HOH . G 6 HOH A 39 339 41 HOH HOH . G 6 HOH A 40 340 61 HOH HOH . G 6 HOH A 41 341 11 HOH HOH . G 6 HOH A 42 342 26 HOH HOH . G 6 HOH A 43 343 53 HOH HOH . G 6 HOH A 44 344 22 HOH HOH . G 6 HOH A 45 345 14 HOH HOH . G 6 HOH A 46 346 7 HOH HOH . G 6 HOH A 47 347 57 HOH HOH . G 6 HOH A 48 348 34 HOH HOH . G 6 HOH A 49 349 49 HOH HOH . G 6 HOH A 50 350 33 HOH HOH . G 6 HOH A 51 351 51 HOH HOH . G 6 HOH A 52 352 56 HOH HOH . G 6 HOH A 53 353 46 HOH HOH . G 6 HOH A 54 354 29 HOH HOH . G 6 HOH A 55 355 10 HOH HOH . G 6 HOH A 56 356 17 HOH HOH . G 6 HOH A 57 357 47 HOH HOH . G 6 HOH A 58 358 58 HOH HOH . G 6 HOH A 59 359 52 HOH HOH . G 6 HOH A 60 360 35 HOH HOH . G 6 HOH A 61 361 48 HOH HOH . G 6 HOH A 62 362 54 HOH HOH . G 6 HOH A 63 363 36 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -7.842 _atom_site.Cartn_y 14.466 _atom_site.Cartn_z -3.236 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #