data_5KKT # _model_server_result.job_id FAhXR4BRuBprU2uVqKCfWA _model_server_result.datetime_utc '2025-03-26 17:02:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5KKT # _exptl.entry_id 5KKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 490.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-[3-(4-methylpiperazin-1-yl)propoxy]phenyl]-~{N}-[4-(1~{H}-pyrrolo[2,3-b]pyridin-3-yl)-1,3-thiazol-2-yl]ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KKT _cell.length_a 182.91 _cell.length_b 182.91 _cell.length_c 90.56 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H30 N6 O2 S' _chem_comp.formula_weight 490.62 _chem_comp.id 6U2 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-[3-(4-methylpiperazin-1-yl)propoxy]phenyl]-~{N}-[4-(1~{H}-pyrrolo[2,3-b]pyridin-3-yl)-1,3-thiazol-2-yl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N36 C35 6U2 doub 1 n y N36 C31 6U2 sing 2 n y N29 C31 6U2 sing 3 n y N29 C28 6U2 sing 4 n y C35 C34 6U2 sing 5 n y C31 C32 6U2 doub 6 n y C28 C27 6U2 doub 7 n y C34 C33 6U2 doub 8 n y C32 C27 6U2 sing 9 n y C32 C33 6U2 sing 10 n y C27 C24 6U2 sing 11 n n C24 C25 6U2 doub 12 n y C24 N23 6U2 sing 13 n y C25 S26 6U2 sing 14 n y N23 C22 6U2 doub 15 n y S26 C22 6U2 sing 16 n y C22 N21 6U2 sing 17 n n N21 C19 6U2 sing 18 n n C19 O20 6U2 doub 19 n n C19 C18 6U2 sing 20 n n C18 C16 6U2 sing 21 n n C15 C16 6U2 doub 22 n y C15 C14 6U2 sing 23 n y C16 C17 6U2 sing 24 n y C14 C13 6U2 doub 25 n y C17 C12 6U2 doub 26 n y C13 C12 6U2 sing 27 n y C12 O11 6U2 sing 28 n n C10 O11 6U2 sing 29 n n C10 C9 6U2 sing 30 n n C9 C8 6U2 sing 31 n n C8 N5 6U2 sing 32 n n C4 N5 6U2 sing 33 n n C4 C3 6U2 sing 34 n n N5 C6 6U2 sing 35 n n C3 N2 6U2 sing 36 n n C6 C7 6U2 sing 37 n n N2 C7 6U2 sing 38 n n N2 C1 6U2 sing 39 n n C1 H1 6U2 sing 40 n n C1 H2 6U2 sing 41 n n C1 H3 6U2 sing 42 n n C3 H4 6U2 sing 43 n n C3 H5 6U2 sing 44 n n C4 H6 6U2 sing 45 n n C4 H7 6U2 sing 46 n n C6 H8 6U2 sing 47 n n C6 H9 6U2 sing 48 n n C7 H10 6U2 sing 49 n n C7 H11 6U2 sing 50 n n C8 H12 6U2 sing 51 n n C8 H13 6U2 sing 52 n n C9 H14 6U2 sing 53 n n C9 H15 6U2 sing 54 n n C10 H16 6U2 sing 55 n n C10 H17 6U2 sing 56 n n C13 H18 6U2 sing 57 n n C14 H21 6U2 sing 58 n n C15 H22 6U2 sing 59 n n C17 H23 6U2 sing 60 n n C18 H24 6U2 sing 61 n n C18 H25 6U2 sing 62 n n N21 H26 6U2 sing 63 n n C25 H27 6U2 sing 64 n n C28 H28 6U2 sing 65 n n N29 H30 6U2 sing 66 n n C33 H29 6U2 sing 67 n n C34 H31 6U2 sing 68 n n C35 H32 6U2 sing 69 n n # _atom_sites.entry_id 5KKT _atom_sites.fract_transf_matrix[1][1] 0.005467 _atom_sites.fract_transf_matrix[1][2] 0.003156 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6U2 A 1 501 2 6U2 694 . D 2 6U2 B 1 501 1 6U2 694 . E 3 HOH A 1 601 169 HOH HOH . E 3 HOH A 2 602 22 HOH HOH . E 3 HOH A 3 603 427 HOH HOH . E 3 HOH A 4 604 37 HOH HOH . E 3 HOH A 5 605 284 HOH HOH . E 3 HOH A 6 606 451 HOH HOH . E 3 HOH A 7 607 243 HOH HOH . E 3 HOH A 8 608 412 HOH HOH . E 3 HOH A 9 609 407 HOH HOH . E 3 HOH A 10 610 189 HOH HOH . E 3 HOH A 11 611 409 HOH HOH . E 3 HOH A 12 612 440 HOH HOH . E 3 HOH A 13 613 414 HOH HOH . E 3 HOH A 14 614 406 HOH HOH . E 3 HOH A 15 615 328 HOH HOH . E 3 HOH A 16 616 425 HOH HOH . E 3 HOH A 17 617 54 HOH HOH . E 3 HOH A 18 618 289 HOH HOH . E 3 HOH A 19 619 445 HOH HOH . E 3 HOH A 20 620 94 HOH HOH . E 3 HOH A 21 621 50 HOH HOH . E 3 HOH A 22 622 441 HOH HOH . E 3 HOH A 23 623 430 HOH HOH . E 3 HOH A 24 624 244 HOH HOH . E 3 HOH A 25 625 447 HOH HOH . E 3 HOH A 26 626 63 HOH HOH . E 3 HOH A 27 627 15 HOH HOH . E 3 HOH A 28 628 421 HOH HOH . E 3 HOH A 29 629 90 HOH HOH . E 3 HOH A 30 630 432 HOH HOH . E 3 HOH A 31 631 282 HOH HOH . E 3 HOH A 32 632 57 HOH HOH . E 3 HOH A 33 633 433 HOH HOH . E 3 HOH A 34 634 391 HOH HOH . E 3 HOH A 35 635 444 HOH HOH . E 3 HOH A 36 636 442 HOH HOH . E 3 HOH A 37 637 439 HOH HOH . E 3 HOH A 38 638 327 HOH HOH . E 3 HOH A 39 639 32 HOH HOH . E 3 HOH A 40 640 411 HOH HOH . E 3 HOH A 41 641 448 HOH HOH . E 3 HOH A 42 642 155 HOH HOH . E 3 HOH A 43 643 74 HOH HOH . E 3 HOH A 44 644 88 HOH HOH . E 3 HOH A 45 645 33 HOH HOH . E 3 HOH A 46 646 44 HOH HOH . E 3 HOH A 47 647 375 HOH HOH . E 3 HOH A 48 648 118 HOH HOH . E 3 HOH A 49 649 58 HOH HOH . E 3 HOH A 50 650 76 HOH HOH . E 3 HOH A 51 651 261 HOH HOH . E 3 HOH A 52 652 417 HOH HOH . E 3 HOH A 53 653 200 HOH HOH . E 3 HOH A 54 654 371 HOH HOH . E 3 HOH A 55 655 452 HOH HOH . E 3 HOH A 56 656 245 HOH HOH . E 3 HOH A 57 657 325 HOH HOH . E 3 HOH A 58 658 141 HOH HOH . E 3 HOH A 59 659 87 HOH HOH . E 3 HOH A 60 660 219 HOH HOH . E 3 HOH A 61 661 258 HOH HOH . E 3 HOH A 62 662 453 HOH HOH . E 3 HOH A 63 663 26 HOH HOH . E 3 HOH A 64 664 416 HOH HOH . E 3 HOH A 65 665 403 HOH HOH . E 3 HOH A 66 666 223 HOH HOH . E 3 HOH A 67 667 306 HOH HOH . E 3 HOH A 68 668 30 HOH HOH . E 3 HOH A 69 669 17 HOH HOH . E 3 HOH A 70 670 150 HOH HOH . E 3 HOH A 71 671 93 HOH HOH . E 3 HOH A 72 672 368 HOH HOH . E 3 HOH A 73 673 49 HOH HOH . E 3 HOH A 74 674 55 HOH HOH . E 3 HOH A 75 675 424 HOH HOH . E 3 HOH A 76 676 146 HOH HOH . E 3 HOH A 77 677 272 HOH HOH . E 3 HOH A 78 678 438 HOH HOH . E 3 HOH A 79 679 24 HOH HOH . E 3 HOH A 80 680 352 HOH HOH . E 3 HOH A 81 681 186 HOH HOH . E 3 HOH A 82 682 121 HOH HOH . E 3 HOH A 83 683 449 HOH HOH . E 3 HOH A 84 684 252 HOH HOH . E 3 HOH A 85 685 177 HOH HOH . E 3 HOH A 86 686 437 HOH HOH . E 3 HOH A 87 687 413 HOH HOH . E 3 HOH A 88 688 53 HOH HOH . E 3 HOH A 89 689 443 HOH HOH . E 3 HOH A 90 690 197 HOH HOH . E 3 HOH A 91 691 434 HOH HOH . E 3 HOH A 92 692 342 HOH HOH . E 3 HOH A 93 693 128 HOH HOH . E 3 HOH A 94 694 270 HOH HOH . E 3 HOH A 95 695 405 HOH HOH . E 3 HOH A 96 696 81 HOH HOH . E 3 HOH A 97 697 387 HOH HOH . E 3 HOH A 98 698 35 HOH HOH . E 3 HOH A 99 699 16 HOH HOH . E 3 HOH A 100 700 137 HOH HOH . E 3 HOH A 101 701 240 HOH HOH . E 3 HOH A 102 702 48 HOH HOH . E 3 HOH A 103 703 318 HOH HOH . E 3 HOH A 104 704 182 HOH HOH . F 3 HOH B 1 601 396 HOH HOH . F 3 HOH B 2 602 426 HOH HOH . F 3 HOH B 3 603 85 HOH HOH . F 3 HOH B 4 604 418 HOH HOH . F 3 HOH B 5 605 404 HOH HOH . F 3 HOH B 6 606 400 HOH HOH . F 3 HOH B 7 607 160 HOH HOH . F 3 HOH B 8 608 285 HOH HOH . F 3 HOH B 9 609 116 HOH HOH . F 3 HOH B 10 610 408 HOH HOH . F 3 HOH B 11 611 420 HOH HOH . F 3 HOH B 12 612 13 HOH HOH . F 3 HOH B 13 613 326 HOH HOH . F 3 HOH B 14 614 428 HOH HOH . F 3 HOH B 15 615 14 HOH HOH . F 3 HOH B 16 616 66 HOH HOH . F 3 HOH B 17 617 415 HOH HOH . F 3 HOH B 18 618 422 HOH HOH . F 3 HOH B 19 619 70 HOH HOH . F 3 HOH B 20 620 435 HOH HOH . F 3 HOH B 21 621 176 HOH HOH . F 3 HOH B 22 622 171 HOH HOH . F 3 HOH B 23 623 431 HOH HOH . F 3 HOH B 24 624 31 HOH HOH . F 3 HOH B 25 625 36 HOH HOH . F 3 HOH B 26 626 293 HOH HOH . F 3 HOH B 27 627 172 HOH HOH . F 3 HOH B 28 628 410 HOH HOH . F 3 HOH B 29 629 312 HOH HOH . F 3 HOH B 30 630 61 HOH HOH . F 3 HOH B 31 631 101 HOH HOH . F 3 HOH B 32 632 429 HOH HOH . F 3 HOH B 33 633 98 HOH HOH . F 3 HOH B 34 634 29 HOH HOH . F 3 HOH B 35 635 292 HOH HOH . F 3 HOH B 36 636 159 HOH HOH . F 3 HOH B 37 637 246 HOH HOH . F 3 HOH B 38 638 19 HOH HOH . F 3 HOH B 39 639 73 HOH HOH . F 3 HOH B 40 640 45 HOH HOH . F 3 HOH B 41 641 218 HOH HOH . F 3 HOH B 42 642 212 HOH HOH . F 3 HOH B 43 643 369 HOH HOH . F 3 HOH B 44 644 91 HOH HOH . F 3 HOH B 45 645 358 HOH HOH . F 3 HOH B 46 646 18 HOH HOH . F 3 HOH B 47 647 149 HOH HOH . F 3 HOH B 48 648 60 HOH HOH . F 3 HOH B 49 649 183 HOH HOH . F 3 HOH B 50 650 446 HOH HOH . F 3 HOH B 51 651 110 HOH HOH . F 3 HOH B 52 652 303 HOH HOH . F 3 HOH B 53 653 298 HOH HOH . F 3 HOH B 54 654 144 HOH HOH . F 3 HOH B 55 655 291 HOH HOH . F 3 HOH B 56 656 315 HOH HOH . F 3 HOH B 57 657 450 HOH HOH . F 3 HOH B 58 658 170 HOH HOH . F 3 HOH B 59 659 83 HOH HOH . F 3 HOH B 60 660 377 HOH HOH . F 3 HOH B 61 661 313 HOH HOH . F 3 HOH B 62 662 241 HOH HOH . F 3 HOH B 63 663 287 HOH HOH . F 3 HOH B 64 664 104 HOH HOH . F 3 HOH B 65 665 436 HOH HOH . F 3 HOH B 66 666 214 HOH HOH . F 3 HOH B 67 667 190 HOH HOH . F 3 HOH B 68 668 147 HOH HOH . F 3 HOH B 69 669 329 HOH HOH . F 3 HOH B 70 670 40 HOH HOH . F 3 HOH B 71 671 12 HOH HOH . F 3 HOH B 72 672 331 HOH HOH . F 3 HOH B 73 673 238 HOH HOH . F 3 HOH B 74 674 231 HOH HOH . F 3 HOH B 75 675 142 HOH HOH . F 3 HOH B 76 676 288 HOH HOH . F 3 HOH B 77 677 154 HOH HOH . F 3 HOH B 78 678 227 HOH HOH . F 3 HOH B 79 679 337 HOH HOH . F 3 HOH B 80 680 336 HOH HOH . F 3 HOH B 81 681 255 HOH HOH . F 3 HOH B 82 682 38 HOH HOH . F 3 HOH B 83 683 68 HOH HOH . F 3 HOH B 84 684 151 HOH HOH . F 3 HOH B 85 685 194 HOH HOH . F 3 HOH B 86 686 109 HOH HOH . F 3 HOH B 87 687 72 HOH HOH . F 3 HOH B 88 688 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 6U2 . . . D 2 -1.366 128.823 34.33 1 82.06 ? C1 6U2 501 B 1 HETATM 2 C C3 6U2 . . . D 2 -0.413 129.326 32.142 1 80.06 ? C3 6U2 501 B 1 HETATM 3 C C4 6U2 . . . D 2 0.667 130.151 31.424 1 78.36 ? C4 6U2 501 B 1 HETATM 4 C C6 6U2 . . . D 2 0.497 131.898 33.177 1 78.09 ? C6 6U2 501 B 1 HETATM 5 C C7 6U2 . . . D 2 -0.567 131.06 33.903 1 80.31 ? C7 6U2 501 B 1 HETATM 6 C C8 6U2 . . . D 2 1.553 132.357 31.075 1 71.78 ? C8 6U2 501 B 1 HETATM 7 C C9 6U2 . . . D 2 0.974 133.652 30.534 1 68.09 ? C9 6U2 501 B 1 HETATM 8 C C10 6U2 . . . D 2 1.685 133.915 29.228 1 67.08 ? C10 6U2 501 B 1 HETATM 9 C C12 6U2 . . . D 2 2.127 136.01 28.175 1 60.93 ? C12 6U2 501 B 1 HETATM 10 C C13 6U2 . . . D 2 3.068 136.996 27.899 1 58.15 ? C13 6U2 501 B 1 HETATM 11 N N2 6U2 . . . D 2 -0.38 129.628 33.594 1 81.46 ? N2 6U2 501 B 1 HETATM 12 N N5 6U2 . . . D 2 0.493 131.59 31.73 1 76.5 ? N5 6U2 501 B 1 HETATM 13 O O11 6U2 . . . D 2 2.288 135.217 29.278 1 66.54 ? O11 6U2 501 B 1 HETATM 14 C C14 6U2 . . . D 2 2.885 137.831 26.801 1 58.61 ? C14 6U2 501 B 1 HETATM 15 C C15 6U2 . . . D 2 1.802 137.658 25.942 1 59.4 ? C15 6U2 501 B 1 HETATM 16 C C16 6U2 . . . D 2 0.882 136.649 26.189 1 61.7 ? C16 6U2 501 B 1 HETATM 17 C C17 6U2 . . . D 2 1.034 135.843 27.312 1 59.82 ? C17 6U2 501 B 1 HETATM 18 C C18 6U2 . . . D 2 -0.326 136.478 25.298 1 66.01 ? C18 6U2 501 B 1 HETATM 19 C C19 6U2 . . . D 2 0.029 135.634 24.115 1 71.78 ? C19 6U2 501 B 1 HETATM 20 O O20 6U2 . . . D 2 0.207 134.445 24.289 1 74.1 ? O20 6U2 501 B 1 HETATM 21 N N21 6U2 . . . D 2 0.149 136.232 22.905 1 73.62 ? N21 6U2 501 B 1 HETATM 22 C C22 6U2 . . . D 2 0.537 135.563 21.734 1 71.98 ? C22 6U2 501 B 1 HETATM 23 N N23 6U2 . . . D 2 0.669 136.149 20.574 1 70.69 ? N23 6U2 501 B 1 HETATM 24 C C24 6U2 . . . D 2 1.083 135.406 19.557 1 69.16 ? C24 6U2 501 B 1 HETATM 25 C C25 6U2 . . . D 2 1.35 134.132 19.916 1 69 ? C25 6U2 501 B 1 HETATM 26 S S26 6U2 . . . D 2 1.049 133.93 21.639 1 68.42 ? S26 6U2 501 B 1 HETATM 27 C C27 6U2 . . . D 2 1.228 135.914 18.158 1 68.6 ? C27 6U2 501 B 1 HETATM 28 C C28 6U2 . . . D 2 1.797 135.259 17.11 1 66.91 ? C28 6U2 501 B 1 HETATM 29 N N29 6U2 . . . D 2 1.754 136.023 15.981 1 65.52 ? N29 6U2 501 B 1 HETATM 30 C C31 6U2 . . . D 2 1.135 137.215 16.248 1 68.39 ? C31 6U2 501 B 1 HETATM 31 C C32 6U2 . . . D 2 0.775 137.208 17.62 1 68.21 ? C32 6U2 501 B 1 HETATM 32 C C33 6U2 . . . D 2 0.119 138.328 18.152 1 66.66 ? C33 6U2 501 B 1 HETATM 33 C C34 6U2 . . . D 2 -0.153 139.411 17.322 1 66.13 ? C34 6U2 501 B 1 HETATM 34 C C35 6U2 . . . D 2 0.198 139.337 15.978 1 68.39 ? C35 6U2 501 B 1 HETATM 35 N N36 6U2 . . . D 2 0.847 138.283 15.495 1 70.37 ? N36 6U2 501 B 1 HETATM 36 H H30 6U2 . . . D 2 2.103 135.759 15.117 1 65.24 ? H30 6U2 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #