data_5KL7 # _model_server_result.job_id Fj3KzT9jkDIZIwSZnF-szA _model_server_result.datetime_utc '2024-11-22 03:48:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5KL7 # _exptl.entry_id 5KL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KL7 _cell.length_a 67.458 _cell.length_b 77.797 _cell.length_c 35.683 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 8 B DG 8 1_555 B P 1CC 9 B 1CC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale2 B O3' 1CC 9 B 1CC 9 1_555 B P DG 10 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale3 C O3' DA 2 C DA 2 1_555 C P 5CM 3 C 5CM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale4 C O3' 5CM 3 C 5CM 3 1_555 C P DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? metalc ? metalc1 A SG CYS 11 A CYS 355 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A SG CYS 16 A CYS 360 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc3 A NE2 HIS 29 A HIS 373 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc4 A NE2 HIS 33 A HIS 377 1_555 D ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc5 A SG CYS 41 A CYS 385 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A SG CYS 44 A CYS 388 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc7 A NE2 HIS 57 A HIS 401 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc8 A NE2 HIS 61 A HIS 405 1_555 E ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc9 A SG CYS 69 A CYS 413 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc10 A SG CYS 74 A CYS 418 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc11 A NE2 HIS 87 A HIS 431 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc12 A NE2 HIS 91 A HIS 435 1_555 F ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? hydrog WATSON-CRICK hydrog1 B N1 DG 2 B DG 2 1_555 C N3 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 2 B DG 2 1_555 C O2 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 2 B DG 2 1_555 C N4 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 3 B DC 3 1_555 C N1 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 3 B DC 3 1_555 C O6 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 3 B DC 3 1_555 C N2 DG 10 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 4 B DG 4 1_555 C N3 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 4 B DG 4 1_555 C O2 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 4 B DG 4 1_555 C N4 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 5 B DT 5 1_555 C N1 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 5 B DT 5 1_555 C N6 DA 8 C DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DG 6 B DG 6 1_555 C N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N2 DG 6 B DG 6 1_555 C O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O6 DG 6 B DG 6 1_555 C N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 7 B DG 7 1_555 C N3 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 7 B DG 7 1_555 C O2 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 7 B DG 7 1_555 C N4 DC 6 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DG 8 B DG 8 1_555 C N3 DC 5 C DC 5 1_555 ? ? ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DG 8 B DG 8 1_555 C N3 DC 5 C DC 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N2 DG 8 B DG 8 1_555 C O2 DC 5 C DC 5 1_555 ? ? ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 8 B DG 8 1_555 C O2 DC 5 C DC 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 8 B DG 8 1_555 C N4 DC 5 C DC 5 1_555 ? ? ? ? A ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O6 DG 8 B DG 8 1_555 C N4 DC 5 C DC 5 1_555 ? ? ? ? B ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N3 1CC 9 B 1CC 9 1_555 C N1 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N4 1CC 9 B 1CC 9 1_555 C O6 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O2 1CC 9 B 1CC 9 1_555 C N2 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N1 DG 10 B DG 10 1_555 C N3 5CM 3 C 5CM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N2 DG 10 B DG 10 1_555 C O2 5CM 3 C 5CM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B O6 DG 10 B DG 10 1_555 C N4 5CM 3 C 5CM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N3 DT 11 B DT 11 1_555 C N1 DA 2 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O4 DT 11 B DT 11 1_555 C N6 DA 2 C DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KL7 _atom_sites.fract_transf_matrix[1][1] 0.014824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 501 202 ZN ZN . E 4 ZN A 1 502 203 ZN ZN . F 4 ZN A 1 503 204 ZN ZN . G 5 EDO A 1 504 1 EDO EDO . H 5 EDO A 1 505 2 EDO EDO . I 6 HOH A 1 601 136 HOH HOH . I 6 HOH A 2 602 14 HOH HOH . I 6 HOH A 3 603 138 HOH HOH . I 6 HOH A 4 604 38 HOH HOH . I 6 HOH A 5 605 100 HOH HOH . I 6 HOH A 6 606 97 HOH HOH . I 6 HOH A 7 607 63 HOH HOH . I 6 HOH A 8 608 60 HOH HOH . I 6 HOH A 9 609 18 HOH HOH . I 6 HOH A 10 610 80 HOH HOH . I 6 HOH A 11 611 73 HOH HOH . I 6 HOH A 12 612 83 HOH HOH . I 6 HOH A 13 613 69 HOH HOH . I 6 HOH A 14 614 95 HOH HOH . I 6 HOH A 15 615 35 HOH HOH . I 6 HOH A 16 616 110 HOH HOH . I 6 HOH A 17 617 57 HOH HOH . I 6 HOH A 18 618 33 HOH HOH . I 6 HOH A 19 619 52 HOH HOH . I 6 HOH A 20 620 11 HOH HOH . I 6 HOH A 21 621 67 HOH HOH . I 6 HOH A 22 622 86 HOH HOH . I 6 HOH A 23 623 31 HOH HOH . I 6 HOH A 24 624 2 HOH HOH . I 6 HOH A 25 625 39 HOH HOH . I 6 HOH A 26 626 32 HOH HOH . I 6 HOH A 27 627 68 HOH HOH . I 6 HOH A 28 628 76 HOH HOH . I 6 HOH A 29 629 40 HOH HOH . I 6 HOH A 30 630 82 HOH HOH . I 6 HOH A 31 631 59 HOH HOH . I 6 HOH A 32 632 61 HOH HOH . I 6 HOH A 33 633 115 HOH HOH . I 6 HOH A 34 634 13 HOH HOH . I 6 HOH A 35 635 71 HOH HOH . I 6 HOH A 36 636 51 HOH HOH . I 6 HOH A 37 637 4 HOH HOH . I 6 HOH A 38 638 111 HOH HOH . I 6 HOH A 39 639 27 HOH HOH . I 6 HOH A 40 640 108 HOH HOH . I 6 HOH A 41 641 6 HOH HOH . I 6 HOH A 42 642 16 HOH HOH . I 6 HOH A 43 643 10 HOH HOH . I 6 HOH A 44 644 139 HOH HOH . I 6 HOH A 45 645 64 HOH HOH . I 6 HOH A 46 646 93 HOH HOH . I 6 HOH A 47 647 79 HOH HOH . I 6 HOH A 48 648 87 HOH HOH . I 6 HOH A 49 649 48 HOH HOH . I 6 HOH A 50 650 36 HOH HOH . I 6 HOH A 51 651 28 HOH HOH . I 6 HOH A 52 652 122 HOH HOH . I 6 HOH A 53 653 105 HOH HOH . I 6 HOH A 54 654 25 HOH HOH . I 6 HOH A 55 655 24 HOH HOH . I 6 HOH A 56 656 106 HOH HOH . I 6 HOH A 57 657 98 HOH HOH . I 6 HOH A 58 658 78 HOH HOH . I 6 HOH A 59 659 119 HOH HOH . I 6 HOH A 60 660 137 HOH HOH . I 6 HOH A 61 661 55 HOH HOH . I 6 HOH A 62 662 23 HOH HOH . I 6 HOH A 63 663 142 HOH HOH . I 6 HOH A 64 664 109 HOH HOH . I 6 HOH A 65 665 112 HOH HOH . I 6 HOH A 66 666 133 HOH HOH . I 6 HOH A 67 667 96 HOH HOH . I 6 HOH A 68 668 132 HOH HOH . I 6 HOH A 69 669 34 HOH HOH . I 6 HOH A 70 670 30 HOH HOH . I 6 HOH A 71 671 92 HOH HOH . J 6 HOH B 1 101 29 HOH HOH . J 6 HOH B 2 102 19 HOH HOH . J 6 HOH B 3 103 104 HOH HOH . J 6 HOH B 4 104 58 HOH HOH . J 6 HOH B 5 105 50 HOH HOH . J 6 HOH B 6 106 70 HOH HOH . J 6 HOH B 7 107 101 HOH HOH . J 6 HOH B 8 108 54 HOH HOH . J 6 HOH B 9 109 12 HOH HOH . J 6 HOH B 10 110 1 HOH HOH . J 6 HOH B 11 111 44 HOH HOH . J 6 HOH B 12 112 45 HOH HOH . J 6 HOH B 13 113 17 HOH HOH . J 6 HOH B 14 114 81 HOH HOH . J 6 HOH B 15 115 20 HOH HOH . J 6 HOH B 16 116 124 HOH HOH . J 6 HOH B 17 117 41 HOH HOH . J 6 HOH B 18 118 99 HOH HOH . J 6 HOH B 19 119 127 HOH HOH . J 6 HOH B 20 120 53 HOH HOH . J 6 HOH B 21 121 121 HOH HOH . J 6 HOH B 22 122 7 HOH HOH . J 6 HOH B 23 123 126 HOH HOH . J 6 HOH B 24 124 5 HOH HOH . J 6 HOH B 25 125 56 HOH HOH . J 6 HOH B 26 126 85 HOH HOH . J 6 HOH B 27 127 88 HOH HOH . J 6 HOH B 28 128 103 HOH HOH . J 6 HOH B 29 129 49 HOH HOH . K 6 HOH C 1 101 26 HOH HOH . K 6 HOH C 2 102 22 HOH HOH . K 6 HOH C 3 103 134 HOH HOH . K 6 HOH C 4 104 118 HOH HOH . K 6 HOH C 5 105 21 HOH HOH . K 6 HOH C 6 106 94 HOH HOH . K 6 HOH C 7 107 77 HOH HOH . K 6 HOH C 8 108 74 HOH HOH . K 6 HOH C 9 109 90 HOH HOH . K 6 HOH C 10 110 65 HOH HOH . K 6 HOH C 11 111 43 HOH HOH . K 6 HOH C 12 112 62 HOH HOH . K 6 HOH C 13 113 89 HOH HOH . K 6 HOH C 14 114 125 HOH HOH . K 6 HOH C 15 115 120 HOH HOH . K 6 HOH C 16 116 42 HOH HOH . K 6 HOH C 17 117 140 HOH HOH . K 6 HOH C 18 118 46 HOH HOH . K 6 HOH C 19 119 141 HOH HOH . K 6 HOH C 20 120 47 HOH HOH . K 6 HOH C 21 121 91 HOH HOH . K 6 HOH C 22 122 135 HOH HOH . K 6 HOH C 23 123 3 HOH HOH . K 6 HOH C 24 124 143 HOH HOH . K 6 HOH C 25 125 131 HOH HOH . K 6 HOH C 26 126 75 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 6.702 _atom_site.Cartn_y 33.221 _atom_site.Cartn_z 7.337 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #