data_5KLB # _model_server_result.job_id Ih7No3kmdpzoWffh5x2c8g _model_server_result.datetime_utc '2024-11-16 10:32:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5klb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1301}' # _entry.id 5KLB # _exptl.entry_id 5KLB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KLB _cell.length_a 124.9 _cell.length_b 125.7 _cell.length_c 191.485 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KLB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 HA O HOH . A HOH 1401 1_555 Z CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc2 B OD1 ASN 243 B ASN 1225 1_555 K CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc3 K CA CA . B CA 1301 1_555 C OE1 GLU 246 C GLU 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc4 K CA CA . B CA 1301 1_555 D OD1 ASN 243 D ASN 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc5 K CA CA . B CA 1301 1_555 D OE1 GLU 246 D GLU 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc6 IA O HOH . B HOH 1401 1_555 Z CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc7 IA O HOH . B HOH 1404 1_555 Z CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc8 JA O HOH . C HOH 1401 1_555 Z CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc9 JA O HOH . C HOH 1402 1_555 Z CA CA . D CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc10 Z CA CA . D CA 1301 1_555 KA O HOH . D HOH 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc11 Z CA CA . D CA 1301 1_555 KA O HOH . D HOH 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KLB _atom_sites.fract_transf_matrix[1][1] 0.008006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MC3 A 1 1301 1301 MC3 PX4 . F 3 CA A 1 1302 1302 CA CA . G 2 MC3 A 1 1303 1305 MC3 PX4 . H 4 CPS A 1 1304 402 CPS CPS . I 4 CPS A 1 1305 403 CPS CPS . J 4 CPS A 1 1306 404 CPS CPS . K 3 CA B 1 1301 1 CA CA . L 2 MC3 B 1 1302 1301 MC3 PX4 . M 2 MC3 B 1 1303 1305 MC3 PX4 . N 2 MC3 B 1 1304 1306 MC3 PX4 . O 2 MC3 B 1 1305 1307 MC3 PX4 . P 2 MC3 B 1 1306 1306 MC3 PX4 . Q 4 CPS B 1 1307 406 CPS CPS . R 4 CPS B 1 1308 407 CPS CPS . S 2 MC3 C 1 1301 1301 MC3 PX4 . T 2 MC3 C 1 1302 1302 MC3 PX4 . U 2 MC3 C 1 1303 1303 MC3 PX4 . V 2 MC3 C 1 1304 1304 MC3 PX4 . W 2 MC3 C 1 1305 1305 MC3 PX4 . X 2 MC3 C 1 1306 1306 MC3 PX4 . Y 2 MC3 C 1 1307 1304 MC3 PX4 . Z 3 CA D 1 1301 1302 CA CA . AA 2 MC3 D 1 1302 1301 MC3 PX4 . BA 2 MC3 D 1 1303 1302 MC3 PX4 . CA 2 MC3 D 1 1304 1303 MC3 PX4 . DA 2 MC3 D 1 1305 1304 MC3 PX4 . EA 2 MC3 D 1 1306 1305 MC3 PX4 . FA 2 MC3 D 1 1307 1306 MC3 PX4 . GA 4 CPS D 1 1308 405 CPS CPS . HA 5 HOH A 1 1401 5 HOH HOH . HA 5 HOH A 2 1402 7 HOH HOH . HA 5 HOH A 3 1403 1 HOH HOH . IA 5 HOH B 1 1401 12 HOH HOH . IA 5 HOH B 2 1402 4 HOH HOH . IA 5 HOH B 3 1403 1407 HOH HOH . IA 5 HOH B 4 1404 10 HOH HOH . IA 5 HOH B 5 1405 1408 HOH HOH . IA 5 HOH B 6 1406 1407 HOH HOH . JA 5 HOH C 1 1401 9 HOH HOH . JA 5 HOH C 2 1402 8 HOH HOH . JA 5 HOH C 3 1403 2 HOH HOH . KA 5 HOH D 1 1401 6 HOH HOH . KA 5 HOH D 2 1402 1408 HOH HOH . KA 5 HOH D 3 1403 11 HOH HOH . KA 5 HOH D 4 1404 3 HOH HOH . KA 5 HOH D 5 1405 1408 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Z _atom_site.label_entity_id 3 _atom_site.Cartn_x 61.109 _atom_site.Cartn_y 30.763 _atom_site.Cartn_z 207.293 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1301 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #