data_5KLI # _model_server_result.job_id u43VDGf6lEiJbFuqZJavkg _model_server_result.datetime_utc '2024-11-05 11:25:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":1005}' # _entry.id 5KLI # _exptl.entry_id 5KLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.62 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STRONTIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 64.64 _cell.angle_beta 87.69 _cell.angle_gamma 61.8 _cell.entry_id 5KLI _cell.length_a 118.861 _cell.length_b 126.929 _cell.length_c 127.891 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 1 1 G,H,I,J,K,L,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 Q N N ? 7 T N N ? 7 BA N N ? 7 HA N N ? 7 KA N N ? 7 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 145 B CYS 145 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 C SG CYS 134 C CYS 134 1_555 C SG CYS 151 C CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 E SG CYS 145 F CYS 145 1_555 E SG CYS 169 F CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 F SG CYS 134 G CYS 134 1_555 F SG CYS 151 G CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 H SG CYS 145 L CYS 145 1_555 H SG CYS 169 L CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 I SG CYS 134 M CYS 134 1_555 I SG CYS 151 M CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 K SG CYS 145 P CYS 145 1_555 K SG CYS 169 P CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf8 L SG CYS 134 Q CYS 134 1_555 L SG CYS 151 Q CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B SG CYS 36 B CYS 36 1_555 S CAB HEC . B HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? covale ? covale2 B SG CYS 39 B CYS 39 1_555 S CAC HEC . B HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? covale ? covale3 E SG CYS 36 F CYS 36 1_555 AA CAB HEC . F HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? covale ? covale4 E SG CYS 39 F CYS 39 1_555 AA CAC HEC . F HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? covale ? covale5 H SG CYS 36 L CYS 36 1_555 JA CAB HEC . L HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? covale ? covale6 H SG CYS 39 L CYS 39 1_555 JA CAC HEC . L HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? covale ? covale7 K SG CYS 36 P CYS 36 1_555 RA CAB HEC . P HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale8 K SG CYS 39 P CYS 39 1_555 RA CAC HEC . P HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 M FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A NE2 HIS 111 A HIS 111 1_555 N FE HEM . A HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 A NE2 HIS 198 A HIS 198 1_555 M FE HEM . A HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc4 A NE2 HIS 212 A HIS 212 1_555 N FE HEM . A HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc5 B OD1 ASP 8 B ASP 8 1_555 T SR SR . B SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc6 B O VAL 9 B VAL 9 1_555 T SR SR . B SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc7 B OE1 GLU 14 B GLU 14 1_555 T SR SR . B SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc8 B OE2 GLU 14 B GLU 14 1_555 T SR SR . B SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc9 B NE2 HIS 40 B HIS 40 1_555 S FE HEC . B HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc10 B OE2 GLU 129 B GLU 129 1_555 T SR SR . B SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc11 B SD MET 185 B MET 185 1_555 S FE HEC . B HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc12 C SG CYS 129 C CYS 129 1_555 U FE1 FES . C FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc13 C ND1 HIS 131 C HIS 131 1_555 U FE2 FES . C FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc14 C SG CYS 149 C CYS 149 1_555 U FE1 FES . C FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc15 C ND1 HIS 152 C HIS 152 1_555 U FE2 FES . C FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc16 D NE2 HIS 97 E HIS 97 1_555 V FE HEM . E HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc17 D NE2 HIS 111 E HIS 111 1_555 W FE HEM . E HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc18 D NE2 HIS 198 E HIS 198 1_555 V FE HEM . E HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc19 D NE2 HIS 212 E HIS 212 1_555 W FE HEM . E HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc20 E OD1 ASP 8 F ASP 8 1_555 BA SR SR . F SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc21 E O VAL 9 F VAL 9 1_555 BA SR SR . F SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc22 E OE1 GLU 14 F GLU 14 1_555 BA SR SR . F SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc23 E OE2 GLU 14 F GLU 14 1_555 BA SR SR . F SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc24 E NE2 HIS 40 F HIS 40 1_555 AA FE HEC . F HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc25 E OE2 GLU 129 F GLU 129 1_555 BA SR SR . F SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc26 E SD MET 185 F MET 185 1_555 AA FE HEC . F HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc27 F SG CYS 129 G CYS 129 1_555 CA FE1 FES . G FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc28 F ND1 HIS 131 G HIS 131 1_555 CA FE2 FES . G FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc29 F SG CYS 149 G CYS 149 1_555 CA FE1 FES . G FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc30 F ND1 HIS 152 G HIS 152 1_555 CA FE2 FES . G FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc31 G NE2 HIS 97 K HIS 97 1_555 DA FE HEM . K HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc32 G NE2 HIS 111 K HIS 111 1_555 EA FE HEM . K HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc33 G NE2 HIS 198 K HIS 198 1_555 DA FE HEM . K HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc34 G NE2 HIS 212 K HIS 212 1_555 EA FE HEM . K HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc35 H OD1 ASP 8 L ASP 8 1_555 KA SR SR . L SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc36 H O VAL 9 L VAL 9 1_555 KA SR SR . L SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc37 H OE1 GLU 14 L GLU 14 1_555 KA SR SR . L SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc38 H OE2 GLU 14 L GLU 14 1_555 KA SR SR . L SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc39 H NE2 HIS 40 L HIS 40 1_555 JA FE HEC . L HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc40 H OE2 GLU 129 L GLU 129 1_555 KA SR SR . L SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc41 H SD MET 185 L MET 185 1_555 JA FE HEC . L HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc42 I SG CYS 129 M CYS 129 1_555 LA FE1 FES . M FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc43 I ND1 HIS 131 M HIS 131 1_555 LA FE2 FES . M FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc44 I SG CYS 149 M CYS 149 1_555 LA FE1 FES . M FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc45 I ND1 HIS 152 M HIS 152 1_555 LA FE2 FES . M FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc46 J NE2 HIS 97 O HIS 97 1_555 MA FE HEM . O HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc47 J NE2 HIS 111 O HIS 111 1_555 NA FE HEM . O HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc48 J NE2 HIS 198 O HIS 198 1_555 MA FE HEM . O HEM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc49 J NE2 HIS 212 O HIS 212 1_555 NA FE HEM . O HEM 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc50 K OD1 ASP 8 P ASP 8 1_555 SA SR SR . P SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc51 K O VAL 9 P VAL 9 1_555 SA SR SR . P SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc52 K OE1 GLU 14 P GLU 14 1_555 SA SR SR . P SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc53 K OE2 GLU 14 P GLU 14 1_555 SA SR SR . P SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc54 K NE2 HIS 40 P HIS 40 1_555 RA FE HEC . P HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc55 K OE2 GLU 129 P GLU 129 1_555 SA SR SR . P SR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc56 K SD MET 185 P MET 185 1_555 RA FE HEC . P HEC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc57 L SG CYS 129 Q CYS 129 1_555 TA FE1 FES . Q FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc58 L ND1 HIS 131 Q HIS 131 1_555 TA FE2 FES . Q FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc59 L SG CYS 149 Q CYS 149 1_555 TA FE1 FES . Q FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc60 L ND1 HIS 152 Q HIS 152 1_555 TA FE2 FES . Q FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? # _chem_comp.formula 'Sr 2' _chem_comp.formula_weight 87.62 _chem_comp.id SR _chem_comp.mon_nstd_flag . _chem_comp.name 'STRONTIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KLI _atom_sites.fract_transf_matrix[1][1] 0.008413 _atom_sites.fract_transf_matrix[1][2] -0.004512 _atom_sites.fract_transf_matrix[1][3] 0.001984 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00894 _atom_sites.fract_transf_matrix[2][3] -0.004692 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 HEM A 1 1001 1001 HEM HEM . N 4 HEM A 1 1002 1002 HEM HEM . O 5 SMA A 1 1003 1101 SMA SMA . P 6 ANJ A 1 1004 1201 ANJ ANJ . Q 7 SR A 1 1005 5 SR SR . R 8 LOP A 1 1006 21 LOP LOP . S 9 HEC B 1 1001 1001 HEC HEC . T 7 SR B 1 1002 1 SR SR . U 10 FES C 1 1001 1001 FES FES . V 4 HEM E 1 1001 1001 HEM HEM . W 4 HEM E 1 1002 1002 HEM HEM . X 5 SMA E 1 1003 1101 SMA SMA . Y 6 ANJ E 1 1004 1201 ANJ ANJ . Z 8 LOP E 1 1005 22 LOP LOP . AA 9 HEC F 1 1001 1001 HEC HEC . BA 7 SR F 1 1002 2 SR SR . CA 10 FES G 1 1001 1001 FES FES . DA 4 HEM K 1 1001 1001 HEM HEM . EA 4 HEM K 1 1002 1002 HEM HEM . FA 5 SMA K 1 1003 1101 SMA SMA . GA 6 ANJ K 1 1004 1201 ANJ ANJ . HA 7 SR K 1 1005 6 SR SR . IA 8 LOP K 1 1006 23 LOP LOP . JA 9 HEC L 1 1001 1001 HEC HEC . KA 7 SR L 1 1002 3 SR SR . LA 10 FES M 1 1001 1001 FES FES . MA 4 HEM O 1 1001 1001 HEM HEM . NA 4 HEM O 1 1002 1002 HEM HEM . OA 5 SMA O 1 1003 1101 SMA SMA . PA 6 ANJ O 1 1004 1201 ANJ ANJ . QA 8 LOP O 1 1005 24 LOP LOP . RA 9 HEC P 1 1001 1001 HEC HEC . SA 7 SR P 1 1002 4 SR SR . TA 10 FES Q 1 1001 1001 FES FES . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SR _atom_site.label_atom_id SR _atom_site.label_comp_id SR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id HA _atom_site.label_entity_id 7 _atom_site.Cartn_x 0.289 _atom_site.Cartn_y 0.499 _atom_site.Cartn_z 1.077 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 121.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SR _atom_site.auth_comp_id SR _atom_site.auth_seq_id 1005 _atom_site.auth_asym_id K _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 540 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #