data_5KLS # _model_server_result.job_id ftBveB-3eqkIya00wMj7FA _model_server_result.datetime_utc '2024-11-16 09:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1304}' # _entry.id 5KLS # _exptl.entry_id 5KLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 481.38 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O3-ethyl O5-methyl (4R)-4-(2-bromophenyl)-2-[2-(dimethylamino)ethoxymethyl]-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KLS _cell.length_a 125.47 _cell.length_b 125.87 _cell.length_c 191.705 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 196 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 1178 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id L _struct_conn.ptnr2_label_atom_id CA _struct_conn.ptnr2_label_comp_id CA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CA _struct_conn.ptnr2_auth_seq_id 1301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.842 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H29 Br N2 O5' _chem_comp.formula_weight 481.38 _chem_comp.id 6UC _chem_comp.mon_nstd_flag . _chem_comp.name 'O3-ethyl O5-methyl (4R)-4-(2-bromophenyl)-2-[2-(dimethylamino)ethoxymethyl]-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ CAH 6UC doub 1 n y CAJ CAZ 6UC sing 2 n y CAH CAI 6UC sing 3 n y BRAG CAZ 6UC sing 4 n n CAZ CBA 6UC doub 5 n y CAI CAK 6UC doub 6 n y CBA CAK 6UC sing 7 n y CBA CBB 6UC sing 8 n n CBB CAX 6UC sing 9 n n CBB CAY 6UC sing 10 n n OAE CAU 6UC doub 11 n n CAX CAU 6UC sing 12 n n CAX CAT 6UC doub 13 n n CAU OAQ 6UC sing 14 n n OAF CAV 6UC doub 15 n n CAY CAV 6UC sing 16 n n CAY CAW 6UC doub 17 n n NAP CAT 6UC sing 18 n n NAP CAW 6UC sing 19 n n CAT CAC 6UC sing 20 n n CAV OAS 6UC sing 21 n n CAW C24 6UC sing 22 n n OAQ CAB 6UC sing 23 n n OAS CAL 6UC sing 24 n n C24 O25 6UC sing 25 n n CAL CAA 6UC sing 26 n n O25 C26 6UC sing 27 n n C26 C27 6UC sing 28 n n C27 N28 6UC sing 29 n n C22 N28 6UC sing 30 n n C21 N28 6UC sing 31 n n CAA H1 6UC sing 32 n n CAA H2 6UC sing 33 n n CAA H3 6UC sing 34 n n CAL H4 6UC sing 35 n n CAL H5 6UC sing 36 n n NAP H6 6UC sing 37 n n CBB H9 6UC sing 38 n n CAK H10 6UC sing 39 n n CAI H11 6UC sing 40 n n CAH H12 6UC sing 41 n n CAJ H13 6UC sing 42 n n CAB H14 6UC sing 43 n n CAB H15 6UC sing 44 n n CAB H16 6UC sing 45 n n CAC H17 6UC sing 46 n n CAC H18 6UC sing 47 n n CAC H19 6UC sing 48 n n C24 H20 6UC sing 49 n n C24 H21 6UC sing 50 n n C26 H22 6UC sing 51 n n C26 H23 6UC sing 52 n n C27 H24 6UC sing 53 n n C27 H25 6UC sing 54 n n C21 H27 6UC sing 55 n n C21 H28 6UC sing 56 n n C21 H29 6UC sing 57 n n C22 H30 6UC sing 58 n n C22 H31 6UC sing 59 n n C22 H32 6UC sing 60 n n # _atom_sites.entry_id 5KLS _atom_sites.fract_transf_matrix[1][1] 0.00797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MC3 A 1 1301 1309 MC3 PX5 . F 2 MC3 A 1 1302 1310 MC3 PX5 . G 2 MC3 A 1 1303 1307 MC3 PX7 . H 2 MC3 A 1 1304 1312 MC3 PX8 . I 2 MC3 B 1 1301 1308 MC3 PX7 . J 2 MC3 B 1 1302 1311 MC3 PX8 . K 2 MC3 B 1 1303 1305 MC3 PX4 . L 3 CA C 1 1301 2 CA CA . M 2 MC3 C 1 1302 1307 MC3 PX7 . N 2 MC3 C 1 1303 1313 MC3 PX8 . O 4 6UC C 1 1304 5 6UC AMX . P 2 MC3 C 1 1305 1304 MC3 PX4 . Q 2 MC3 C 1 1306 1307 MC3 PX4 . R 3 CA D 1 1301 1 CA CA . S 2 MC3 D 1 1302 1308 MC3 PX5 . T 2 MC3 D 1 1303 1311 MC3 PX8 . U 2 MC3 D 1 1304 1309 MC3 PX7 . V 2 MC3 D 1 1305 1306 MC3 PX4 . W 5 HOH A 1 1401 3 HOH HOH . W 5 HOH A 2 1402 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 6UC . . . O 4 165.429 40.751 18.922 1 101.21 ? CAA 6UC 1304 C 1 HETATM 2 C CAL 6UC . . . O 4 164.977 41.327 17.521 1 105.57 ? CAL 6UC 1304 C 1 HETATM 3 O OAS 6UC . . . O 4 165.61 40.566 16.483 1 106.73 ? OAS 6UC 1304 C 1 HETATM 4 C CAV 6UC . . . O 4 164.863 40.041 15.381 1 108.32 ? CAV 6UC 1304 C 1 HETATM 5 O OAF 6UC . . . O 4 164.035 40.718 14.831 1 103.4 ? OAF 6UC 1304 C 1 HETATM 6 C CAY 6UC . . . O 4 165.028 38.58 14.87 1 114.72 ? CAY 6UC 1304 C 1 HETATM 7 C CAW 6UC . . . O 4 164.383 37.556 15.527 1 116.73 ? CAW 6UC 1304 C 1 HETATM 8 N NAP 6UC . . . O 4 164.854 36.128 15.11 1 113.68 ? NAP 6UC 1304 C 1 HETATM 9 C CAT 6UC . . . O 4 166.305 36.257 15.291 1 110.34 ? CAT 6UC 1304 C 1 HETATM 10 C CAX 6UC . . . O 4 166.93 37.039 14.426 1 106.19 ? CAX 6UC 1304 C 1 HETATM 11 C CBB 6UC . . . O 4 166.078 38.179 13.821 1 114.07 ? CBB 6UC 1304 C 1 HETATM 12 C CBA 6UC . . . O 4 165.182 38.093 12.409 1 120.05 ? CBA 6UC 1304 C 1 HETATM 13 C CAK 6UC . . . O 4 163.884 38.679 12.485 1 125.79 ? CAK 6UC 1304 C 1 HETATM 14 C CAI 6UC . . . O 4 162.962 38.746 11.437 1 125.86 ? CAI 6UC 1304 C 1 HETATM 15 C CAH 6UC . . . O 4 163.299 38.237 10.203 1 125.54 ? CAH 6UC 1304 C 1 HETATM 16 C CAJ 6UC . . . O 4 164.552 37.68 10.056 1 122.25 ? CAJ 6UC 1304 C 1 HETATM 17 C CAZ 6UC . . . O 4 165.463 37.615 11.109 1 121.58 ? CAZ 6UC 1304 C 1 HETATM 18 BR BRAG 6UC . . . O 4 167.044 36.782 10.464 1 135.39 ? BRAG 6UC 1304 C 1 HETATM 19 C CAU 6UC . . . O 4 168.57 37.09 14.807 1 95.36 ? CAU 6UC 1304 C 1 HETATM 20 O OAE 6UC . . . O 4 169.366 37.347 13.991 1 90.97 ? OAE 6UC 1304 C 1 HETATM 21 O OAQ 6UC . . . O 4 169.004 36.937 16.169 1 90.97 ? OAQ 6UC 1304 C 1 HETATM 22 C CAB 6UC . . . O 4 170.17 36.211 16.57 1 88.39 ? CAB 6UC 1304 C 1 HETATM 23 C CAC 6UC . . . O 4 167.04 35.074 15.962 1 111.27 ? CAC 6UC 1304 C 1 HETATM 24 C C24 6UC . . . O 4 163.655 37.835 16.771 1 118.91 ? C24 6UC 1304 C 1 HETATM 25 O O25 6UC . . . O 4 164.671 38.125 17.792 1 118.66 ? O25 6UC 1304 C 1 HETATM 26 C C26 6UC . . . O 4 164.993 37.055 18.67 1 119.56 ? C26 6UC 1304 C 1 HETATM 27 C C27 6UC . . . O 4 166.37 37.294 19.338 1 118.73 ? C27 6UC 1304 C 1 HETATM 28 N N28 6UC . . . O 4 166.954 36.073 19.988 1 116.65 ? N28 6UC 1304 C 1 HETATM 29 C C21 6UC . . . O 4 166.136 34.851 19.925 1 113.56 ? C21 6UC 1304 C 1 HETATM 30 C C22 6UC . . . O 4 168.339 35.808 19.522 1 115.81 ? C22 6UC 1304 C 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #