data_5KLU
#
_model_server_result.job_id            XzXjL7_fHVT137tNNfkEJw 
_model_server_result.datetime_utc      '2024-12-02 17:05:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5klu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    5KLU 
#
_exptl.entry_id    5KLU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KLU 
_cell.length_a            54.489 
_cell.length_b            61.438 
_cell.length_c            74.165 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KLU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 17 A CYS 14 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
covale ? covale2 A SG CYS 20 A CYS 17 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
covale ? covale3 B SG CYS 17 B CYS 14 1_555 H CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? 
covale ? covale4 B SG CYS 20 B CYS 17 1_555 H CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
metalc ? metalc1 A NE2 HIS 21 A HIS 18 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc2 C FE HEC . A HEC 201 1_555 K O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc3 B NE2 HIS 21 B HIS 18 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 H FE HEC . B HEC 201 1_555 L O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 206 n n 
FE NB HEC sing 207 n n 
FE NC HEC sing 208 n n 
FE ND HEC sing 209 n n 
CHA C1A HEC doub 210 n n 
CHA C4D HEC sing 211 n n 
CHA HHA HEC sing 212 n n 
CHB C4A HEC doub 213 n n 
CHB C1B HEC sing 214 n n 
CHB HHB HEC sing 215 n n 
CHC C4B HEC doub 216 n n 
CHC C1C HEC sing 217 n n 
CHC HHC HEC sing 218 n n 
CHD C4C HEC doub 219 n n 
CHD C1D HEC sing 220 n n 
CHD HHD HEC sing 221 n n 
NA C1A HEC sing 222 n y 
NA C4A HEC sing 223 n y 
C1A C2A HEC sing 224 n y 
C2A C3A HEC doub 225 n y 
C2A CAA HEC sing 226 n n 
C3A C4A HEC sing 227 n y 
C3A CMA HEC sing 228 n n 
CMA HMA1 HEC sing 229 n n 
CMA HMA2 HEC sing 230 n n 
CMA HMA3 HEC sing 231 n n 
CAA CBA HEC sing 232 n n 
CAA HAA1 HEC sing 233 n n 
CAA HAA2 HEC sing 234 n n 
CBA CGA HEC sing 235 n n 
CBA HBA1 HEC sing 236 n n 
CBA HBA2 HEC sing 237 n n 
CGA O1A HEC doub 238 n n 
CGA O2A HEC sing 239 n n 
O2A H2A HEC sing 240 n n 
NB C1B HEC sing 241 n y 
NB C4B HEC sing 242 n y 
C1B C2B HEC doub 243 n y 
C2B C3B HEC sing 244 n y 
C2B CMB HEC sing 245 n n 
C3B C4B HEC sing 246 n y 
C3B CAB HEC doub 247 e n 
CMB HMB1 HEC sing 248 n n 
CMB HMB2 HEC sing 249 n n 
CMB HMB3 HEC sing 250 n n 
CAB CBB HEC sing 251 n n 
CAB HAB HEC sing 252 n n 
CBB HBB1 HEC sing 253 n n 
CBB HBB2 HEC sing 254 n n 
CBB HBB3 HEC sing 255 n n 
NC C1C HEC sing 256 n y 
NC C4C HEC sing 257 n y 
C1C C2C HEC doub 258 n y 
C2C C3C HEC sing 259 n y 
C2C CMC HEC sing 260 n n 
C3C C4C HEC sing 261 n y 
C3C CAC HEC doub 262 e n 
CMC HMC1 HEC sing 263 n n 
CMC HMC2 HEC sing 264 n n 
CMC HMC3 HEC sing 265 n n 
CAC CBC HEC sing 266 n n 
CAC HAC HEC sing 267 n n 
CBC HBC1 HEC sing 268 n n 
CBC HBC2 HEC sing 269 n n 
CBC HBC3 HEC sing 270 n n 
ND C1D HEC sing 271 n y 
ND C4D HEC sing 272 n y 
C1D C2D HEC doub 273 n y 
C2D C3D HEC sing 274 n y 
C2D CMD HEC sing 275 n n 
C3D C4D HEC doub 276 n y 
C3D CAD HEC sing 277 n n 
CMD HMD1 HEC sing 278 n n 
CMD HMD2 HEC sing 279 n n 
CMD HMD3 HEC sing 280 n n 
CAD CBD HEC sing 281 n n 
CAD HAD1 HEC sing 282 n n 
CAD HAD2 HEC sing 283 n n 
CBD CGD HEC sing 284 n n 
CBD HBD1 HEC sing 285 n n 
CBD HBD2 HEC sing 286 n n 
CGD O1D HEC doub 287 n n 
CGD O2D HEC sing 288 n n 
O2D H2D HEC sing 289 n n 
#
_atom_sites.entry_id                     5KLU 
_atom_sites.fract_transf_matrix[1][1]    0.018352 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC A 1 201 105 HEC CHE . 
D 3 6UZ A 1 202 101 6UZ UQQ . 
E 4 SO4 A 1 203 1 SO4 SO4 . 
F 4 SO4 A 1 204 2 SO4 SO4 . 
G 4 SO4 A 1 205 3 SO4 SO4 . 
H 2 HEC B 1 201 105 HEC CHE . 
I 3 6UZ B 1 202 102 6UZ UQQ . 
J 4 SO4 B 1 203 4 SO4 SO4 . 
K 5 HOH A 1 301 22 HOH HOH . 
K 5 HOH A 2 302 51 HOH HOH . 
K 5 HOH A 3 303 44 HOH HOH . 
K 5 HOH A 4 304 32 HOH HOH . 
K 5 HOH A 5 305 4 HOH HOH . 
K 5 HOH A 6 306 8 HOH HOH . 
K 5 HOH A 7 307 15 HOH HOH . 
K 5 HOH A 8 308 43 HOH HOH . 
K 5 HOH A 9 309 11 HOH HOH . 
K 5 HOH A 10 310 16 HOH HOH . 
K 5 HOH A 11 311 24 HOH HOH . 
K 5 HOH A 12 312 18 HOH HOH . 
K 5 HOH A 13 313 52 HOH HOH . 
K 5 HOH A 14 314 19 HOH HOH . 
K 5 HOH A 15 315 13 HOH HOH . 
K 5 HOH A 16 316 30 HOH HOH . 
K 5 HOH A 17 317 1 HOH HOH . 
K 5 HOH A 18 318 21 HOH HOH . 
K 5 HOH A 19 319 42 HOH HOH . 
K 5 HOH A 20 320 14 HOH HOH . 
K 5 HOH A 21 321 38 HOH HOH . 
K 5 HOH A 22 322 23 HOH HOH . 
K 5 HOH A 23 323 29 HOH HOH . 
K 5 HOH A 24 324 34 HOH HOH . 
K 5 HOH A 25 325 2 HOH HOH . 
K 5 HOH A 26 326 7 HOH HOH . 
K 5 HOH A 27 327 20 HOH HOH . 
K 5 HOH A 28 328 33 HOH HOH . 
K 5 HOH A 29 329 3 HOH HOH . 
K 5 HOH A 30 330 40 HOH HOH . 
K 5 HOH A 31 331 39 HOH HOH . 
L 5 HOH B 1 301 45 HOH HOH . 
L 5 HOH B 2 302 54 HOH HOH . 
L 5 HOH B 3 303 49 HOH HOH . 
L 5 HOH B 4 304 31 HOH HOH . 
L 5 HOH B 5 305 37 HOH HOH . 
L 5 HOH B 6 306 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . C 2 -9.29 -1.885 -6.584 1 29.39 ? FE HEC 201 A 1 
HETATM 2 C CHA HEC . . . C 2 -9.374 1.183 -5.038 1 30.04 ? CHA HEC 201 A 1 
HETATM 3 C CHB HEC . . . C 2 -12.262 -2.704 -5.181 1 30.42 ? CHB HEC 201 A 1 
HETATM 4 C CHC HEC . . . C 2 -9.347 -4.805 -8.467 1 30.89 ? CHC HEC 201 A 1 
HETATM 5 C CHD HEC . . . C 2 -6.125 -1.338 -7.528 1 31.55 ? CHD HEC 201 A 1 
HETATM 6 N NA HEC . . . C 2 -10.566 -0.933 -5.378 1 28.95 ? NA HEC 201 A 1 
HETATM 7 C C1A HEC . . . C 2 -10.445 0.316 -4.832 1 28.77 ? C1A HEC 201 A 1 
HETATM 8 C C2A HEC . . . C 2 -11.637 0.59 -4.01 1 28.72 ? C2A HEC 201 A 1 
HETATM 9 C C3A HEC . . . C 2 -12.425 -0.477 -4.052 1 31.76 ? C3A HEC 201 A 1 
HETATM 10 C C4A HEC . . . C 2 -11.765 -1.456 -4.892 1 31.77 ? C4A HEC 201 A 1 
HETATM 11 C CMA HEC . . . C 2 -13.8 -0.695 -3.351 1 40.52 ? CMA HEC 201 A 1 
HETATM 12 C CAA HEC . . . C 2 -11.805 1.911 -3.232 1 33.23 ? CAA HEC 201 A 1 
HETATM 13 C CBA HEC . . . C 2 -10.986 1.765 -1.921 1 31.55 ? CBA HEC 201 A 1 
HETATM 14 C CGA HEC . . . C 2 -11.323 2.775 -0.84 1 29.93 ? CGA HEC 201 A 1 
HETATM 15 O O1A HEC . . . C 2 -10.839 2.567 0.295 1 35.63 ? O1A HEC 201 A 1 
HETATM 16 O O2A HEC . . . C 2 -12.065 3.71 -1.187 1 31.49 ? O2A HEC 201 A 1 
HETATM 17 N NB HEC . . . C 2 -10.56 -3.447 -6.786 1 29.3 ? NB HEC 201 A 1 
HETATM 18 C C1B HEC . . . C 2 -11.72 -3.605 -6.079 1 29.01 ? C1B HEC 201 A 1 
HETATM 19 C C2B HEC . . . C 2 -12.33 -4.838 -6.479 1 32.52 ? C2B HEC 201 A 1 
HETATM 20 C C3B HEC . . . C 2 -11.54 -5.388 -7.417 1 27.42 ? C3B HEC 201 A 1 
HETATM 21 C C4B HEC . . . C 2 -10.414 -4.537 -7.609 1 31.85 ? C4B HEC 201 A 1 
HETATM 22 C CMB HEC . . . C 2 -13.664 -5.329 -5.874 1 30.49 ? CMB HEC 201 A 1 
HETATM 23 C CAB HEC . . . C 2 -11.778 -6.751 -8.143 1 36.06 ? CAB HEC 201 A 1 
HETATM 24 C CBB HEC . . . C 2 -13.071 -6.638 -8.988 1 37.82 ? CBB HEC 201 A 1 
HETATM 25 N NC HEC . . . C 2 -8.004 -2.876 -7.749 1 28.77 ? NC HEC 201 A 1 
HETATM 26 C C1C HEC . . . C 2 -8.191 -4.057 -8.449 1 36.46 ? C1C HEC 201 A 1 
HETATM 27 C C2C HEC . . . C 2 -6.949 -4.421 -9.156 1 35.77 ? C2C HEC 201 A 1 
HETATM 28 C C3C HEC . . . C 2 -6.07 -3.447 -8.888 1 33.79 ? C3C HEC 201 A 1 
HETATM 29 C C4C HEC . . . C 2 -6.69 -2.493 -8.008 1 28.96 ? C4C HEC 201 A 1 
HETATM 30 C CMC HEC . . . C 2 -6.762 -5.691 -10.028 1 36.13 ? CMC HEC 201 A 1 
HETATM 31 C CAC HEC . . . C 2 -4.552 -3.368 -9.365 1 33.39 ? CAC HEC 201 A 1 
HETATM 32 C CBC HEC . . . C 2 -4.308 -3.485 -10.89 1 36.54 ? CBC HEC 201 A 1 
HETATM 33 N ND HEC . . . C 2 -7.97 -0.353 -6.315 1 29.87 ? ND HEC 201 A 1 
HETATM 34 C C1D HEC . . . C 2 -6.698 -0.308 -6.822 1 30.11 ? C1D HEC 201 A 1 
HETATM 35 C C2D HEC . . . C 2 -6.089 0.967 -6.472 1 33.37 ? C2D HEC 201 A 1 
HETATM 36 C C3D HEC . . . C 2 -6.972 1.654 -5.767 1 30.32 ? C3D HEC 201 A 1 
HETATM 37 C C4D HEC . . . C 2 -8.19 0.841 -5.683 1 29.91 ? C4D HEC 201 A 1 
HETATM 38 C CMD HEC . . . C 2 -4.647 1.349 -6.87 1 25.05 ? CMD HEC 201 A 1 
HETATM 39 C CAD HEC . . . C 2 -6.872 3.062 -5.164 1 31.46 ? CAD HEC 201 A 1 
HETATM 40 C CBD HEC . . . C 2 -7.178 4.113 -6.226 1 29.46 ? CBD HEC 201 A 1 
HETATM 41 C CGD HEC . . . C 2 -6.913 5.548 -5.854 1 33.29 ? CGD HEC 201 A 1 
HETATM 42 O O1D HEC . . . C 2 -6.039 5.728 -4.959 1 30.92 ? O1D HEC 201 A 1 
HETATM 43 O O2D HEC . . . C 2 -7.587 6.443 -6.437 1 32.15 ? O2D HEC 201 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           43 
#