data_5KLU # _model_server_result.job_id ET5eYrMMUoIirosILJV5QA _model_server_result.datetime_utc '2024-12-02 17:21:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5klu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 5KLU # _exptl.entry_id 5KLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KLU _cell.length_a 54.489 _cell.length_b 61.438 _cell.length_c 74.165 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 17 A CYS 14 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale2 A SG CYS 20 A CYS 17 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? covale ? covale3 B SG CYS 17 B CYS 14 1_555 H CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale4 B SG CYS 20 B CYS 17 1_555 H CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc1 A NE2 HIS 21 A HIS 18 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 C FE HEC . A HEC 201 1_555 K O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc3 B NE2 HIS 21 B HIS 18 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 H FE HEC . B HEC 201 1_555 L O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 206 n n FE NB HEC sing 207 n n FE NC HEC sing 208 n n FE ND HEC sing 209 n n CHA C1A HEC doub 210 n n CHA C4D HEC sing 211 n n CHA HHA HEC sing 212 n n CHB C4A HEC doub 213 n n CHB C1B HEC sing 214 n n CHB HHB HEC sing 215 n n CHC C4B HEC doub 216 n n CHC C1C HEC sing 217 n n CHC HHC HEC sing 218 n n CHD C4C HEC doub 219 n n CHD C1D HEC sing 220 n n CHD HHD HEC sing 221 n n NA C1A HEC sing 222 n y NA C4A HEC sing 223 n y C1A C2A HEC sing 224 n y C2A C3A HEC doub 225 n y C2A CAA HEC sing 226 n n C3A C4A HEC sing 227 n y C3A CMA HEC sing 228 n n CMA HMA1 HEC sing 229 n n CMA HMA2 HEC sing 230 n n CMA HMA3 HEC sing 231 n n CAA CBA HEC sing 232 n n CAA HAA1 HEC sing 233 n n CAA HAA2 HEC sing 234 n n CBA CGA HEC sing 235 n n CBA HBA1 HEC sing 236 n n CBA HBA2 HEC sing 237 n n CGA O1A HEC doub 238 n n CGA O2A HEC sing 239 n n O2A H2A HEC sing 240 n n NB C1B HEC sing 241 n y NB C4B HEC sing 242 n y C1B C2B HEC doub 243 n y C2B C3B HEC sing 244 n y C2B CMB HEC sing 245 n n C3B C4B HEC sing 246 n y C3B CAB HEC doub 247 e n CMB HMB1 HEC sing 248 n n CMB HMB2 HEC sing 249 n n CMB HMB3 HEC sing 250 n n CAB CBB HEC sing 251 n n CAB HAB HEC sing 252 n n CBB HBB1 HEC sing 253 n n CBB HBB2 HEC sing 254 n n CBB HBB3 HEC sing 255 n n NC C1C HEC sing 256 n y NC C4C HEC sing 257 n y C1C C2C HEC doub 258 n y C2C C3C HEC sing 259 n y C2C CMC HEC sing 260 n n C3C C4C HEC sing 261 n y C3C CAC HEC doub 262 e n CMC HMC1 HEC sing 263 n n CMC HMC2 HEC sing 264 n n CMC HMC3 HEC sing 265 n n CAC CBC HEC sing 266 n n CAC HAC HEC sing 267 n n CBC HBC1 HEC sing 268 n n CBC HBC2 HEC sing 269 n n CBC HBC3 HEC sing 270 n n ND C1D HEC sing 271 n y ND C4D HEC sing 272 n y C1D C2D HEC doub 273 n y C2D C3D HEC sing 274 n y C2D CMD HEC sing 275 n n C3D C4D HEC doub 276 n y C3D CAD HEC sing 277 n n CMD HMD1 HEC sing 278 n n CMD HMD2 HEC sing 279 n n CMD HMD3 HEC sing 280 n n CAD CBD HEC sing 281 n n CAD HAD1 HEC sing 282 n n CAD HAD2 HEC sing 283 n n CBD CGD HEC sing 284 n n CBD HBD1 HEC sing 285 n n CBD HBD2 HEC sing 286 n n CGD O1D HEC doub 287 n n CGD O2D HEC sing 288 n n O2D H2D HEC sing 289 n n # _atom_sites.entry_id 5KLU _atom_sites.fract_transf_matrix[1][1] 0.018352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 105 HEC CHE . D 3 6UZ A 1 202 101 6UZ UQQ . E 4 SO4 A 1 203 1 SO4 SO4 . F 4 SO4 A 1 204 2 SO4 SO4 . G 4 SO4 A 1 205 3 SO4 SO4 . H 2 HEC B 1 201 105 HEC CHE . I 3 6UZ B 1 202 102 6UZ UQQ . J 4 SO4 B 1 203 4 SO4 SO4 . K 5 HOH A 1 301 22 HOH HOH . K 5 HOH A 2 302 51 HOH HOH . K 5 HOH A 3 303 44 HOH HOH . K 5 HOH A 4 304 32 HOH HOH . K 5 HOH A 5 305 4 HOH HOH . K 5 HOH A 6 306 8 HOH HOH . K 5 HOH A 7 307 15 HOH HOH . K 5 HOH A 8 308 43 HOH HOH . K 5 HOH A 9 309 11 HOH HOH . K 5 HOH A 10 310 16 HOH HOH . K 5 HOH A 11 311 24 HOH HOH . K 5 HOH A 12 312 18 HOH HOH . K 5 HOH A 13 313 52 HOH HOH . K 5 HOH A 14 314 19 HOH HOH . K 5 HOH A 15 315 13 HOH HOH . K 5 HOH A 16 316 30 HOH HOH . K 5 HOH A 17 317 1 HOH HOH . K 5 HOH A 18 318 21 HOH HOH . K 5 HOH A 19 319 42 HOH HOH . K 5 HOH A 20 320 14 HOH HOH . K 5 HOH A 21 321 38 HOH HOH . K 5 HOH A 22 322 23 HOH HOH . K 5 HOH A 23 323 29 HOH HOH . K 5 HOH A 24 324 34 HOH HOH . K 5 HOH A 25 325 2 HOH HOH . K 5 HOH A 26 326 7 HOH HOH . K 5 HOH A 27 327 20 HOH HOH . K 5 HOH A 28 328 33 HOH HOH . K 5 HOH A 29 329 3 HOH HOH . K 5 HOH A 30 330 40 HOH HOH . K 5 HOH A 31 331 39 HOH HOH . L 5 HOH B 1 301 45 HOH HOH . L 5 HOH B 2 302 54 HOH HOH . L 5 HOH B 3 303 49 HOH HOH . L 5 HOH B 4 304 31 HOH HOH . L 5 HOH B 5 305 37 HOH HOH . L 5 HOH B 6 306 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . H 2 -5.386 7.799 -31.13 1 73.32 ? FE HEC 201 B 1 HETATM 2 C CHA HEC . . . H 2 -7.557 5.651 -32.663 1 82.96 ? CHA HEC 201 B 1 HETATM 3 C CHB HEC . . . H 2 -6.864 10.423 -32.664 1 84.83 ? CHB HEC 201 B 1 HETATM 4 C CHC HEC . . . H 2 -3.518 9.939 -29.186 1 72.11 ? CHC HEC 201 B 1 HETATM 5 C CHD HEC . . . H 2 -3.439 5.221 -30.181 1 70.82 ? CHD HEC 201 B 1 HETATM 6 N NA HEC . . . H 2 -6.915 8 -32.403 1 82.28 ? NA HEC 201 B 1 HETATM 7 C C1A HEC . . . H 2 -7.7 6.998 -32.935 1 84.26 ? C1A HEC 201 B 1 HETATM 8 C C2A HEC . . . H 2 -8.687 7.589 -33.813 1 86.74 ? C2A HEC 201 B 1 HETATM 9 C C3A HEC . . . H 2 -8.488 8.909 -33.817 1 86.25 ? C3A HEC 201 B 1 HETATM 10 C C4A HEC . . . H 2 -7.382 9.183 -32.934 1 83.61 ? C4A HEC 201 B 1 HETATM 11 C CMA HEC . . . H 2 -9.265 9.998 -34.586 1 82.3 ? CMA HEC 201 B 1 HETATM 12 C CAA HEC . . . H 2 -9.729 6.778 -34.601 1 87.96 ? CAA HEC 201 B 1 HETATM 13 C CBA HEC . . . H 2 -9.248 6.651 -36.065 1 91.27 ? CBA HEC 201 B 1 HETATM 14 C CGA HEC . . . H 2 -10.191 5.946 -37.007 1 93.35 ? CGA HEC 201 B 1 HETATM 15 O O1A HEC . . . H 2 -9.638 5.337 -37.961 1 96.86 ? O1A HEC 201 B 1 HETATM 16 O O2A HEC . . . H 2 -11.415 6.049 -36.742 1 93.05 ? O2A HEC 201 B 1 HETATM 17 N NB HEC . . . H 2 -5.224 9.776 -30.957 1 74.91 ? NB HEC 201 B 1 HETATM 18 C C1B HEC . . . H 2 -5.928 10.704 -31.702 1 79.11 ? C1B HEC 201 B 1 HETATM 19 C C2B HEC . . . H 2 -5.538 12.023 -31.305 1 80.22 ? C2B HEC 201 B 1 HETATM 20 C C3B HEC . . . H 2 -4.611 11.871 -30.341 1 77.72 ? C3B HEC 201 B 1 HETATM 21 C C4B HEC . . . H 2 -4.403 10.472 -30.107 1 74.41 ? C4B HEC 201 B 1 HETATM 22 C CMB HEC . . . H 2 -6.136 13.304 -31.951 1 80.9 ? CMB HEC 201 B 1 HETATM 23 C CAB HEC . . . H 2 -3.876 13.028 -29.593 1 82.38 ? CAB HEC 201 B 1 HETATM 24 C CBB HEC . . . H 2 -4.865 13.769 -28.683 1 84.63 ? CBB HEC 201 B 1 HETATM 25 N NC HEC . . . H 2 -3.801 7.608 -29.924 1 75.09 ? NC HEC 201 B 1 HETATM 26 C C1C HEC . . . H 2 -3.167 8.608 -29.203 1 73.46 ? C1C HEC 201 B 1 HETATM 27 C C2C HEC . . . H 2 -2.051 8.046 -28.45 1 75.36 ? C2C HEC 201 B 1 HETATM 28 C C3C HEC . . . H 2 -2.043 6.735 -28.733 1 74.85 ? C3C HEC 201 B 1 HETATM 29 C C4C HEC . . . H 2 -3.112 6.438 -29.641 1 72.94 ? C4C HEC 201 B 1 HETATM 30 C CMC HEC . . . H 2 -1.119 8.86 -27.532 1 77.21 ? CMC HEC 201 B 1 HETATM 31 C CAC HEC . . . H 2 -1.009 5.675 -28.171 1 71.85 ? CAC HEC 201 B 1 HETATM 32 C CBC HEC . . . H 2 -1.201 5.476 -26.657 1 70.84 ? CBC HEC 201 B 1 HETATM 33 N ND HEC . . . H 2 -5.487 5.812 -31.383 1 78.42 ? ND HEC 201 B 1 HETATM 34 C C1D HEC . . . H 2 -4.565 4.903 -30.904 1 74.18 ? C1D HEC 201 B 1 HETATM 35 C C2D HEC . . . H 2 -4.988 3.578 -31.291 1 78.2 ? C2D HEC 201 B 1 HETATM 36 C C3D HEC . . . H 2 -6.119 3.688 -31.977 1 77.33 ? C3D HEC 201 B 1 HETATM 37 C C4D HEC . . . H 2 -6.457 5.106 -32.042 1 78.13 ? C4D HEC 201 B 1 HETATM 38 C CMD HEC . . . H 2 -4.181 2.308 -30.912 1 79.48 ? CMD HEC 201 B 1 HETATM 39 C CAD HEC . . . H 2 -6.982 2.581 -32.6 1 77.09 ? CAD HEC 201 B 1 HETATM 40 C CBD HEC . . . H 2 -8.104 2.035 -31.729 1 75.46 ? CBD HEC 201 B 1 HETATM 41 C CGD HEC . . . H 2 -8.746 0.776 -32.227 1 77.03 ? CGD HEC 201 B 1 HETATM 42 O O1D HEC . . . H 2 -8.046 0.123 -33.052 1 82.54 ? O1D HEC 201 B 1 HETATM 43 O O2D HEC . . . H 2 -9.887 0.477 -31.79 1 73.08 ? O2D HEC 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 43 #