data_5KLU
#
_model_server_result.job_id            yIxki74sxdp3p-2x8bNw9A 
_model_server_result.datetime_utc      '2024-11-30 16:21:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5klu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5KLU 
#
_exptl.entry_id    5KLU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              494.573 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            omega-undecylenyl-beta-D-maltopyranoside 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KLU 
_cell.length_a            54.489 
_cell.length_b            61.438 
_cell.length_c            74.165 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KLU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 17 A CYS 14 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? 
covale ? covale2 A SG CYS 20 A CYS 17 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
covale ? covale3 B SG CYS 17 B CYS 14 1_555 H CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? 
covale ? covale4 B SG CYS 20 B CYS 17 1_555 H CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
metalc ? metalc1 A NE2 HIS 21 A HIS 18 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc2 C FE HEC . A HEC 201 1_555 K O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc3 B NE2 HIS 21 B HIS 18 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 H FE HEC . B HEC 201 1_555 L O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'C23 H42 O11' 
_chem_comp.formula_weight    494.573 
_chem_comp.id                6UZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              omega-undecylenyl-beta-D-maltopyranoside 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-4,5-bis(oxidanyl )-6-undec-10-enoxy-oxan-3-yl]oxy-oxane-3,4,5-triol' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2' C2' 6UZ sing 1 n n 
CA CB 6UZ sing 2 n n 
CA O1' 6UZ sing 3 n n 
CB CC 6UZ sing 4 n n 
O1' C1' 6UZ sing 5 n n 
C2' C1' 6UZ sing 6 n n 
C2' C3' 6UZ sing 7 n n 
CC CD 6UZ sing 8 n n 
C1' O5' 6UZ sing 9 n n 
O3' C3' 6UZ sing 10 n n 
CF CD 6UZ sing 11 n n 
CF CG 6UZ sing 12 n n 
C3' C4' 6UZ sing 13 n n 
CH CG 6UZ sing 14 n n 
CH CI 6UZ sing 15 n n 
O5' C5' 6UZ sing 16 n n 
C5' C4' 6UZ sing 17 n n 
C5' C6' 6UZ sing 18 n n 
C4' O1 6UZ sing 19 n n 
CJ CI 6UZ sing 20 n n 
CJ CK 6UZ sing 21 n n 
O2 C2 6UZ sing 22 n n 
O1 C1 6UZ sing 23 n n 
C2 C1 6UZ sing 24 n n 
C2 C3 6UZ sing 25 n n 
C1 O5 6UZ sing 26 n n 
CK CL 6UZ doub 27 n n 
C6' O6' 6UZ sing 28 n n 
C3 O3 6UZ sing 29 n n 
C3 C4 6UZ sing 30 n n 
O5 C5 6UZ sing 31 n n 
O4 C4 6UZ sing 32 n n 
C4 C5 6UZ sing 33 n n 
C5 C6 6UZ sing 34 n n 
C6 O6 6UZ sing 35 n n 
C2 H1 6UZ sing 36 n n 
C4 H2 6UZ sing 37 n n 
C5 H3 6UZ sing 38 n n 
C6 H4 6UZ sing 39 n n 
C6 H5 6UZ sing 40 n n 
O2 H6 6UZ sing 41 n n 
O4 H7 6UZ sing 42 n n 
C1 H8 6UZ sing 43 n n 
C3 H9 6UZ sing 44 n n 
O3 H10 6UZ sing 45 n n 
O6 H11 6UZ sing 46 n n 
C1' H12 6UZ sing 47 n n 
C2' H13 6UZ sing 48 n n 
C3' H14 6UZ sing 49 n n 
C4' H15 6UZ sing 50 n n 
C5' H16 6UZ sing 51 n n 
C6' H17 6UZ sing 52 n n 
C6' H18 6UZ sing 53 n n 
O3' H19 6UZ sing 54 n n 
O6' H20 6UZ sing 55 n n 
O2' H21 6UZ sing 56 n n 
CA H22 6UZ sing 57 n n 
CA H23 6UZ sing 58 n n 
CB H24 6UZ sing 59 n n 
CB H25 6UZ sing 60 n n 
CC H26 6UZ sing 61 n n 
CC H27 6UZ sing 62 n n 
CD H28 6UZ sing 63 n n 
CD H29 6UZ sing 64 n n 
CF H30 6UZ sing 65 n n 
CF H31 6UZ sing 66 n n 
CG H32 6UZ sing 67 n n 
CG H33 6UZ sing 68 n n 
CH H34 6UZ sing 69 n n 
CH H35 6UZ sing 70 n n 
CI H36 6UZ sing 71 n n 
CI H37 6UZ sing 72 n n 
CJ H38 6UZ sing 73 n n 
CJ H39 6UZ sing 74 n n 
CK H40 6UZ sing 75 n n 
CL H41 6UZ sing 76 n n 
CL H42 6UZ sing 77 n n 
#
_atom_sites.entry_id                     5KLU 
_atom_sites.fract_transf_matrix[1][1]    0.018352 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC A 1 201 105 HEC CHE . 
D 3 6UZ A 1 202 101 6UZ UQQ . 
E 4 SO4 A 1 203 1 SO4 SO4 . 
F 4 SO4 A 1 204 2 SO4 SO4 . 
G 4 SO4 A 1 205 3 SO4 SO4 . 
H 2 HEC B 1 201 105 HEC CHE . 
I 3 6UZ B 1 202 102 6UZ UQQ . 
J 4 SO4 B 1 203 4 SO4 SO4 . 
K 5 HOH A 1 301 22 HOH HOH . 
K 5 HOH A 2 302 51 HOH HOH . 
K 5 HOH A 3 303 44 HOH HOH . 
K 5 HOH A 4 304 32 HOH HOH . 
K 5 HOH A 5 305 4 HOH HOH . 
K 5 HOH A 6 306 8 HOH HOH . 
K 5 HOH A 7 307 15 HOH HOH . 
K 5 HOH A 8 308 43 HOH HOH . 
K 5 HOH A 9 309 11 HOH HOH . 
K 5 HOH A 10 310 16 HOH HOH . 
K 5 HOH A 11 311 24 HOH HOH . 
K 5 HOH A 12 312 18 HOH HOH . 
K 5 HOH A 13 313 52 HOH HOH . 
K 5 HOH A 14 314 19 HOH HOH . 
K 5 HOH A 15 315 13 HOH HOH . 
K 5 HOH A 16 316 30 HOH HOH . 
K 5 HOH A 17 317 1 HOH HOH . 
K 5 HOH A 18 318 21 HOH HOH . 
K 5 HOH A 19 319 42 HOH HOH . 
K 5 HOH A 20 320 14 HOH HOH . 
K 5 HOH A 21 321 38 HOH HOH . 
K 5 HOH A 22 322 23 HOH HOH . 
K 5 HOH A 23 323 29 HOH HOH . 
K 5 HOH A 24 324 34 HOH HOH . 
K 5 HOH A 25 325 2 HOH HOH . 
K 5 HOH A 26 326 7 HOH HOH . 
K 5 HOH A 27 327 20 HOH HOH . 
K 5 HOH A 28 328 33 HOH HOH . 
K 5 HOH A 29 329 3 HOH HOH . 
K 5 HOH A 30 330 40 HOH HOH . 
K 5 HOH A 31 331 39 HOH HOH . 
L 5 HOH B 1 301 45 HOH HOH . 
L 5 HOH B 2 302 54 HOH HOH . 
L 5 HOH B 3 303 49 HOH HOH . 
L 5 HOH B 4 304 31 HOH HOH . 
L 5 HOH B 5 305 37 HOH HOH . 
L 5 HOH B 6 306 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 6UZ . . . D 3 -28.247 8.495 -5.602 1 86.09 ? C2 6UZ 202 A 1 
HETATM 2 C C4 6UZ . . . D 3 -27.755 9.183 -3.354 1 95.87 ? C4 6UZ 202 A 1 
HETATM 3 C C5 6UZ . . . D 3 -26.671 8.107 -3.14 1 88.9 ? C5 6UZ 202 A 1 
HETATM 4 C C6 6UZ . . . D 3 -26.768 7.649 -1.798 1 83.74 ? C6 6UZ 202 A 1 
HETATM 5 O O2 6UZ . . . D 3 -27.733 9.805 -6.077 1 83.59 ? O2 6UZ 202 A 1 
HETATM 6 O O4 6UZ . . . D 3 -27.131 10.334 -3.928 1 100.28 ? O4 6UZ 202 A 1 
HETATM 7 C C1 6UZ . . . D 3 -27.129 7.51 -5.535 1 75.28 ? C1 6UZ 202 A 1 
HETATM 8 C C3 6UZ . . . D 3 -28.816 8.684 -4.295 1 101.03 ? C3 6UZ 202 A 1 
HETATM 9 O O1 6UZ . . . D 3 -25.96 8.148 -5.994 1 62.36 ? O1 6UZ 202 A 1 
HETATM 10 O O3 6UZ . . . D 3 -29.319 7.389 -3.816 1 111.97 ? O3 6UZ 202 A 1 
HETATM 11 O O5 6UZ . . . D 3 -26.929 6.973 -4.158 1 77.64 ? O5 6UZ 202 A 1 
HETATM 12 O O6 6UZ . . . D 3 -27.031 8.743 -1.012 1 74.32 ? O6 6UZ 202 A 1 
HETATM 13 C C1' 6UZ . . . D 3 -22.73 6.487 -8.057 1 55.34 ? C1' 6UZ 202 A 1 
HETATM 14 C C2' 6UZ . . . D 3 -24.09 5.795 -8.192 1 58.59 ? C2' 6UZ 202 A 1 
HETATM 15 C C3' 6UZ . . . D 3 -25.192 6.682 -7.72 1 55.18 ? C3' 6UZ 202 A 1 
HETATM 16 C C4' 6UZ . . . D 3 -24.936 7.163 -6.345 1 47.88 ? C4' 6UZ 202 A 1 
HETATM 17 C C5' 6UZ . . . D 3 -23.587 7.911 -6.353 1 56.32 ? C5' 6UZ 202 A 1 
HETATM 18 C C6' 6UZ . . . D 3 -23.363 8.673 -5.079 1 59.53 ? C6' 6UZ 202 A 1 
HETATM 19 O O1' 6UZ . . . D 3 -21.682 5.669 -8.469 1 57.91 ? O1' 6UZ 202 A 1 
HETATM 20 O O3' 6UZ . . . D 3 -26.541 6.067 -7.924 1 51.97 ? O3' 6UZ 202 A 1 
HETATM 21 O O5' 6UZ . . . D 3 -22.487 6.986 -6.658 1 52.72 ? O5' 6UZ 202 A 1 
HETATM 22 O O6' 6UZ . . . D 3 -22.995 7.825 -4.044 1 54.75 ? O6' 6UZ 202 A 1 
HETATM 23 O O2' 6UZ . . . D 3 -24.356 5.484 -9.583 1 56.78 ? O2' 6UZ 202 A 1 
HETATM 24 C CA 6UZ . . . D 3 -20.614 6.328 -9.177 1 59.47 ? CA 6UZ 202 A 1 
HETATM 25 C CB 6UZ . . . D 3 -19.255 5.576 -8.888 1 56.46 ? CB 6UZ 202 A 1 
HETATM 26 C CC 6UZ . . . D 3 -18.296 6.626 -8.199 1 60.77 ? CC 6UZ 202 A 1 
HETATM 27 C CD 6UZ . . . D 3 -17.03 5.931 -7.63 1 45.95 ? CD 6UZ 202 A 1 
HETATM 28 C CF 6UZ . . . D 3 -15.828 6.869 -7.812 1 48.46 ? CF 6UZ 202 A 1 
HETATM 29 C CG 6UZ . . . D 3 -14.855 6.683 -6.609 1 50.67 ? CG 6UZ 202 A 1 
HETATM 30 C CH 6UZ . . . D 3 -13.416 7.199 -7.063 1 63.75 ? CH 6UZ 202 A 1 
HETATM 31 C CI 6UZ . . . D 3 -12.405 6.932 -5.943 1 56.35 ? CI 6UZ 202 A 1 
HETATM 32 C CJ 6UZ . . . D 3 -11.846 5.482 -6.09 1 42 ? CJ 6UZ 202 A 1 
HETATM 33 C CK 6UZ . . . D 3 -10.643 5.336 -5.142 1 42.89 ? CK 6UZ 202 A 1 
HETATM 34 C CL 6UZ . . . D 3 -10.771 5.55 -3.834 1 33.35 ? CL 6UZ 202 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#