data_5KLU # _model_server_result.job_id b-gehmp2Vjgx4WAtkkWIMQ _model_server_result.datetime_utc '2024-10-18 22:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5klu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5KLU # _exptl.entry_id 5KLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description omega-undecylenyl-beta-D-maltopyranoside _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KLU _cell.length_a 54.489 _cell.length_b 61.438 _cell.length_c 74.165 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 17 A CYS 14 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale2 A SG CYS 20 A CYS 17 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? covale ? covale3 B SG CYS 17 B CYS 14 1_555 H CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale4 B SG CYS 20 B CYS 17 1_555 H CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc1 A NE2 HIS 21 A HIS 18 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 C FE HEC . A HEC 201 1_555 K O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc3 B NE2 HIS 21 B HIS 18 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 H FE HEC . B HEC 201 1_555 L O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id 6UZ _chem_comp.mon_nstd_flag . _chem_comp.name omega-undecylenyl-beta-D-maltopyranoside _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-4,5-bis(oxidanyl )-6-undec-10-enoxy-oxan-3-yl]oxy-oxane-3,4,5-triol' # _atom_sites.entry_id 5KLU _atom_sites.fract_transf_matrix[1][1] 0.018352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 105 HEC CHE . D 3 6UZ A 1 202 101 6UZ UQQ . E 4 SO4 A 1 203 1 SO4 SO4 . F 4 SO4 A 1 204 2 SO4 SO4 . G 4 SO4 A 1 205 3 SO4 SO4 . H 2 HEC B 1 201 105 HEC CHE . I 3 6UZ B 1 202 102 6UZ UQQ . J 4 SO4 B 1 203 4 SO4 SO4 . K 5 HOH A 1 301 22 HOH HOH . K 5 HOH A 2 302 51 HOH HOH . K 5 HOH A 3 303 44 HOH HOH . K 5 HOH A 4 304 32 HOH HOH . K 5 HOH A 5 305 4 HOH HOH . K 5 HOH A 6 306 8 HOH HOH . K 5 HOH A 7 307 15 HOH HOH . K 5 HOH A 8 308 43 HOH HOH . K 5 HOH A 9 309 11 HOH HOH . K 5 HOH A 10 310 16 HOH HOH . K 5 HOH A 11 311 24 HOH HOH . K 5 HOH A 12 312 18 HOH HOH . K 5 HOH A 13 313 52 HOH HOH . K 5 HOH A 14 314 19 HOH HOH . K 5 HOH A 15 315 13 HOH HOH . K 5 HOH A 16 316 30 HOH HOH . K 5 HOH A 17 317 1 HOH HOH . K 5 HOH A 18 318 21 HOH HOH . K 5 HOH A 19 319 42 HOH HOH . K 5 HOH A 20 320 14 HOH HOH . K 5 HOH A 21 321 38 HOH HOH . K 5 HOH A 22 322 23 HOH HOH . K 5 HOH A 23 323 29 HOH HOH . K 5 HOH A 24 324 34 HOH HOH . K 5 HOH A 25 325 2 HOH HOH . K 5 HOH A 26 326 7 HOH HOH . K 5 HOH A 27 327 20 HOH HOH . K 5 HOH A 28 328 33 HOH HOH . K 5 HOH A 29 329 3 HOH HOH . K 5 HOH A 30 330 40 HOH HOH . K 5 HOH A 31 331 39 HOH HOH . L 5 HOH B 1 301 45 HOH HOH . L 5 HOH B 2 302 54 HOH HOH . L 5 HOH B 3 303 49 HOH HOH . L 5 HOH B 4 304 31 HOH HOH . L 5 HOH B 5 305 37 HOH HOH . L 5 HOH B 6 306 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6UZ . . . D 3 -28.247 8.495 -5.602 1 86.09 ? C2 6UZ 202 A 1 HETATM 2 C C4 6UZ . . . D 3 -27.755 9.183 -3.354 1 95.87 ? C4 6UZ 202 A 1 HETATM 3 C C5 6UZ . . . D 3 -26.671 8.107 -3.14 1 88.9 ? C5 6UZ 202 A 1 HETATM 4 C C6 6UZ . . . D 3 -26.768 7.649 -1.798 1 83.74 ? C6 6UZ 202 A 1 HETATM 5 O O2 6UZ . . . D 3 -27.733 9.805 -6.077 1 83.59 ? O2 6UZ 202 A 1 HETATM 6 O O4 6UZ . . . D 3 -27.131 10.334 -3.928 1 100.28 ? O4 6UZ 202 A 1 HETATM 7 C C1 6UZ . . . D 3 -27.129 7.51 -5.535 1 75.28 ? C1 6UZ 202 A 1 HETATM 8 C C3 6UZ . . . D 3 -28.816 8.684 -4.295 1 101.03 ? C3 6UZ 202 A 1 HETATM 9 O O1 6UZ . . . D 3 -25.96 8.148 -5.994 1 62.36 ? O1 6UZ 202 A 1 HETATM 10 O O3 6UZ . . . D 3 -29.319 7.389 -3.816 1 111.97 ? O3 6UZ 202 A 1 HETATM 11 O O5 6UZ . . . D 3 -26.929 6.973 -4.158 1 77.64 ? O5 6UZ 202 A 1 HETATM 12 O O6 6UZ . . . D 3 -27.031 8.743 -1.012 1 74.32 ? O6 6UZ 202 A 1 HETATM 13 C C1' 6UZ . . . D 3 -22.73 6.487 -8.057 1 55.34 ? C1' 6UZ 202 A 1 HETATM 14 C C2' 6UZ . . . D 3 -24.09 5.795 -8.192 1 58.59 ? C2' 6UZ 202 A 1 HETATM 15 C C3' 6UZ . . . D 3 -25.192 6.682 -7.72 1 55.18 ? C3' 6UZ 202 A 1 HETATM 16 C C4' 6UZ . . . D 3 -24.936 7.163 -6.345 1 47.88 ? C4' 6UZ 202 A 1 HETATM 17 C C5' 6UZ . . . D 3 -23.587 7.911 -6.353 1 56.32 ? C5' 6UZ 202 A 1 HETATM 18 C C6' 6UZ . . . D 3 -23.363 8.673 -5.079 1 59.53 ? C6' 6UZ 202 A 1 HETATM 19 O O1' 6UZ . . . D 3 -21.682 5.669 -8.469 1 57.91 ? O1' 6UZ 202 A 1 HETATM 20 O O3' 6UZ . . . D 3 -26.541 6.067 -7.924 1 51.97 ? O3' 6UZ 202 A 1 HETATM 21 O O5' 6UZ . . . D 3 -22.487 6.986 -6.658 1 52.72 ? O5' 6UZ 202 A 1 HETATM 22 O O6' 6UZ . . . D 3 -22.995 7.825 -4.044 1 54.75 ? O6' 6UZ 202 A 1 HETATM 23 O O2' 6UZ . . . D 3 -24.356 5.484 -9.583 1 56.78 ? O2' 6UZ 202 A 1 HETATM 24 C CA 6UZ . . . D 3 -20.614 6.328 -9.177 1 59.47 ? CA 6UZ 202 A 1 HETATM 25 C CB 6UZ . . . D 3 -19.255 5.576 -8.888 1 56.46 ? CB 6UZ 202 A 1 HETATM 26 C CC 6UZ . . . D 3 -18.296 6.626 -8.199 1 60.77 ? CC 6UZ 202 A 1 HETATM 27 C CD 6UZ . . . D 3 -17.03 5.931 -7.63 1 45.95 ? CD 6UZ 202 A 1 HETATM 28 C CF 6UZ . . . D 3 -15.828 6.869 -7.812 1 48.46 ? CF 6UZ 202 A 1 HETATM 29 C CG 6UZ . . . D 3 -14.855 6.683 -6.609 1 50.67 ? CG 6UZ 202 A 1 HETATM 30 C CH 6UZ . . . D 3 -13.416 7.199 -7.063 1 63.75 ? CH 6UZ 202 A 1 HETATM 31 C CI 6UZ . . . D 3 -12.405 6.932 -5.943 1 56.35 ? CI 6UZ 202 A 1 HETATM 32 C CJ 6UZ . . . D 3 -11.846 5.482 -6.09 1 42 ? CJ 6UZ 202 A 1 HETATM 33 C CK 6UZ . . . D 3 -10.643 5.336 -5.142 1 42.89 ? CK 6UZ 202 A 1 HETATM 34 C CL 6UZ . . . D 3 -10.771 5.55 -3.834 1 33.35 ? CL 6UZ 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #