data_5KLU # _model_server_result.job_id vMz9mDb1TDBum7Nkc2VHKQ _model_server_result.datetime_utc '2024-10-18 22:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5klu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":202}' # _entry.id 5KLU # _exptl.entry_id 5KLU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description omega-undecylenyl-beta-D-maltopyranoside _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KLU _cell.length_a 54.489 _cell.length_b 61.438 _cell.length_c 74.165 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KLU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 17 A CYS 14 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale2 A SG CYS 20 A CYS 17 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? covale ? covale3 B SG CYS 17 B CYS 14 1_555 H CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale4 B SG CYS 20 B CYS 17 1_555 H CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc1 A NE2 HIS 21 A HIS 18 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc2 C FE HEC . A HEC 201 1_555 K O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc3 B NE2 HIS 21 B HIS 18 1_555 H FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 H FE HEC . B HEC 201 1_555 L O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id 6UZ _chem_comp.mon_nstd_flag . _chem_comp.name omega-undecylenyl-beta-D-maltopyranoside _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-2-(hydroxymethyl)-4,5-bis(oxidanyl )-6-undec-10-enoxy-oxan-3-yl]oxy-oxane-3,4,5-triol' # _atom_sites.entry_id 5KLU _atom_sites.fract_transf_matrix[1][1] 0.018352 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 105 HEC CHE . D 3 6UZ A 1 202 101 6UZ UQQ . E 4 SO4 A 1 203 1 SO4 SO4 . F 4 SO4 A 1 204 2 SO4 SO4 . G 4 SO4 A 1 205 3 SO4 SO4 . H 2 HEC B 1 201 105 HEC CHE . I 3 6UZ B 1 202 102 6UZ UQQ . J 4 SO4 B 1 203 4 SO4 SO4 . K 5 HOH A 1 301 22 HOH HOH . K 5 HOH A 2 302 51 HOH HOH . K 5 HOH A 3 303 44 HOH HOH . K 5 HOH A 4 304 32 HOH HOH . K 5 HOH A 5 305 4 HOH HOH . K 5 HOH A 6 306 8 HOH HOH . K 5 HOH A 7 307 15 HOH HOH . K 5 HOH A 8 308 43 HOH HOH . K 5 HOH A 9 309 11 HOH HOH . K 5 HOH A 10 310 16 HOH HOH . K 5 HOH A 11 311 24 HOH HOH . K 5 HOH A 12 312 18 HOH HOH . K 5 HOH A 13 313 52 HOH HOH . K 5 HOH A 14 314 19 HOH HOH . K 5 HOH A 15 315 13 HOH HOH . K 5 HOH A 16 316 30 HOH HOH . K 5 HOH A 17 317 1 HOH HOH . K 5 HOH A 18 318 21 HOH HOH . K 5 HOH A 19 319 42 HOH HOH . K 5 HOH A 20 320 14 HOH HOH . K 5 HOH A 21 321 38 HOH HOH . K 5 HOH A 22 322 23 HOH HOH . K 5 HOH A 23 323 29 HOH HOH . K 5 HOH A 24 324 34 HOH HOH . K 5 HOH A 25 325 2 HOH HOH . K 5 HOH A 26 326 7 HOH HOH . K 5 HOH A 27 327 20 HOH HOH . K 5 HOH A 28 328 33 HOH HOH . K 5 HOH A 29 329 3 HOH HOH . K 5 HOH A 30 330 40 HOH HOH . K 5 HOH A 31 331 39 HOH HOH . L 5 HOH B 1 301 45 HOH HOH . L 5 HOH B 2 302 54 HOH HOH . L 5 HOH B 3 303 49 HOH HOH . L 5 HOH B 4 304 31 HOH HOH . L 5 HOH B 5 305 37 HOH HOH . L 5 HOH B 6 306 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 6UZ . . . I 3 -23.488 7.719 -23.647 1 165.01 ? C2 6UZ 202 B 1 HETATM 2 C C4 6UZ . . . I 3 -22.662 8.657 -21.53 1 162.85 ? C4 6UZ 202 B 1 HETATM 3 C C5 6UZ . . . I 3 -23.363 10.029 -21.681 1 165.99 ? C5 6UZ 202 B 1 HETATM 4 C C6 6UZ . . . I 3 -22.444 11.091 -21.423 1 164.38 ? C6 6UZ 202 B 1 HETATM 5 O O2 6UZ . . . I 3 -24.762 7.144 -24.146 1 165.96 ? O2 6UZ 202 B 1 HETATM 6 O O4 6UZ . . . I 3 -22.546 8.357 -20.136 1 161.07 ? O4 6UZ 202 B 1 HETATM 7 C C1 6UZ . . . I 3 -23.379 9.148 -24.09 1 168.24 ? C1 6UZ 202 B 1 HETATM 8 C C3 6UZ . . . I 3 -23.436 7.553 -22.208 1 162.38 ? C3 6UZ 202 B 1 HETATM 9 O O1 6UZ . . . I 3 -24.09 9.299 -25.289 1 171.75 ? O1 6UZ 202 B 1 HETATM 10 O O3 6UZ . . . I 3 -22.8 6.262 -21.91 1 157.56 ? O3 6UZ 202 B 1 HETATM 11 O O5 6UZ . . . I 3 -23.926 10.133 -23.115 1 169.15 ? O5 6UZ 202 B 1 HETATM 12 O O6 6UZ . . . I 3 -23.127 12.19 -20.95 1 164.8 ? O6 6UZ 202 B 1 HETATM 13 C C1' 6UZ . . . I 3 -21.784 10.455 -28.662 1 165.43 ? C1' 6UZ 202 B 1 HETATM 14 C C2' 6UZ . . . I 3 -23.166 9.848 -28.86 1 171.18 ? C2' 6UZ 202 B 1 HETATM 15 C C3' 6UZ . . . I 3 -23.961 9.809 -27.6 1 172.16 ? C3' 6UZ 202 B 1 HETATM 16 C C4' 6UZ . . . I 3 -23.262 9.123 -26.491 1 170.3 ? C4' 6UZ 202 B 1 HETATM 17 C C5' 6UZ . . . I 3 -21.834 9.671 -26.265 1 165.52 ? C5' 6UZ 202 B 1 HETATM 18 C C6' 6UZ . . . I 3 -20.821 8.562 -26.303 1 161.68 ? C6' 6UZ 202 B 1 HETATM 19 O O1' 6UZ . . . I 3 -20.828 9.611 -29.231 1 155.01 ? O1' 6UZ 202 B 1 HETATM 20 O O3' 6UZ . . . I 3 -25.228 9.114 -27.865 1 173.12 ? O3' 6UZ 202 B 1 HETATM 21 O O5' 6UZ . . . I 3 -21.447 10.719 -27.228 1 166.08 ? O5' 6UZ 202 B 1 HETATM 22 O O6' 6UZ . . . I 3 -21.454 7.331 -26.484 1 161.37 ? O6' 6UZ 202 B 1 HETATM 23 O O2' 6UZ . . . I 3 -23.887 10.654 -29.835 1 176.2 ? O2' 6UZ 202 B 1 HETATM 24 C CA 6UZ . . . I 3 -19.674 10.279 -29.769 1 144.59 ? CA 6UZ 202 B 1 HETATM 25 C CB 6UZ . . . I 3 -18.465 10.157 -28.751 1 130.26 ? CB 6UZ 202 B 1 HETATM 26 C CC 6UZ . . . I 3 -17.235 9.448 -29.464 1 122.08 ? CC 6UZ 202 B 1 HETATM 27 C CD 6UZ . . . I 3 -17.626 7.982 -29.843 1 116.09 ? CD 6UZ 202 B 1 HETATM 28 C CF 6UZ . . . I 3 -16.73 7.485 -30.98 1 113.08 ? CF 6UZ 202 B 1 HETATM 29 C CG 6UZ . . . I 3 -16.115 6.103 -30.604 1 107.91 ? CG 6UZ 202 B 1 HETATM 30 C CH 6UZ . . . I 3 -15.504 5.427 -31.921 1 109.46 ? CH 6UZ 202 B 1 HETATM 31 C CI 6UZ . . . I 3 -14.453 4.37 -31.533 1 106.84 ? CI 6UZ 202 B 1 HETATM 32 C CJ 6UZ . . . I 3 -13.176 4.579 -32.414 1 105.82 ? CJ 6UZ 202 B 1 HETATM 33 C CK 6UZ . . . I 3 -12.224 3.383 -32.25 1 103.07 ? CK 6UZ 202 B 1 HETATM 34 C CL 6UZ . . . I 3 -11.207 3.237 -33.093 1 103.27 ? CL 6UZ 202 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #