data_5KLX # _model_server_result.job_id OM1u4n3V9ohAU8C3WrhxCQ _model_server_result.datetime_utc '2025-01-03 03:40:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5klx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5KLX # _exptl.entry_id 5KLX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.49 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(2~{S})-1-(phenylmethyl)sulfonylpiperidin-2-yl]carbonyloxyethyl pyridine-3-carboxylate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.45 _cell.angle_gamma 90 _cell.entry_id 5KLX _cell.length_a 107.89 _cell.length_b 34.11 _cell.length_c 119.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KLX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,N 1 1 B,I,O 2 1 C,J,P 3 1 D,K,L,M,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 147 A ASP 51 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 A OD2 ASP 147 A ASP 51 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc3 A O PRO 148 A PRO 52 1_555 F MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc4 F MG MG . A MG 202 1_555 N O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc5 F MG MG . A MG 202 1_545 C OD1 ASP 147 C ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc6 F MG MG . A MG 202 1_545 C O PRO 148 C PRO 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 F MG MG . A MG 202 1_555 P O HOH . C HOH 304 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc8 B OD1 ASP 147 B ASP 51 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc9 B OD2 ASP 147 B ASP 51 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc10 B O PRO 148 B PRO 52 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 O O HOH . B HOH 318 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc12 D OD1 ASP 147 D ASP 51 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc13 D O PRO 148 D PRO 52 1_555 L MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc14 L MG MG . D MG 202 1_555 Q O HOH . D HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? # _chem_comp.formula 'C21 H24 N2 O6 S' _chem_comp.formula_weight 432.49 _chem_comp.id 6UO _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(2~{S})-1-(phenylmethyl)sulfonylpiperidin-2-yl]carbonyloxyethyl pyridine-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 C06 6UO sing 1 n n C05 C04 6UO sing 2 n n C06 C07 6UO sing 3 n n C17 C18 6UO doub 4 n y C17 C16 6UO sing 5 n y C18 N19 6UO sing 6 n y C04 N03 6UO sing 7 n n C07 C08 6UO sing 8 n n C16 C15 6UO doub 9 n y N19 C20 6UO doub 10 n y O01 S02 6UO doub 11 n n N03 C08 6UO sing 12 n n N03 S02 6UO sing 13 n n C15 C20 6UO sing 14 n y C15 C14 6UO sing 15 n n C08 C09 6UO sing 16 n n S02 O30 6UO doub 17 n n S02 C23 6UO sing 18 n n C14 O13 6UO sing 19 n n C14 O21 6UO doub 20 n n C09 O10 6UO sing 21 n n C09 O22 6UO doub 22 n n O13 C12 6UO sing 23 n n O10 C11 6UO sing 24 n n C29 C28 6UO doub 25 n y C29 C24 6UO sing 26 n y C23 C24 6UO sing 27 n n C28 C27 6UO sing 28 n y C11 C12 6UO sing 29 n n C24 C25 6UO doub 30 n y C27 C26 6UO doub 31 n y C25 C26 6UO sing 32 n y C11 H1 6UO sing 33 n n C11 H2 6UO sing 34 n n C17 H3 6UO sing 35 n n C18 H4 6UO sing 36 n n C16 H5 6UO sing 37 n n C20 H6 6UO sing 38 n n C23 H7 6UO sing 39 n n C23 H8 6UO sing 40 n n C26 H9 6UO sing 41 n n C27 H10 6UO sing 42 n n C28 H11 6UO sing 43 n n C29 H12 6UO sing 44 n n C12 H13 6UO sing 45 n n C12 H14 6UO sing 46 n n C04 H15 6UO sing 47 n n C04 H16 6UO sing 48 n n C05 H17 6UO sing 49 n n C05 H18 6UO sing 50 n n C06 H19 6UO sing 51 n n C06 H20 6UO sing 52 n n C07 H21 6UO sing 53 n n C07 H22 6UO sing 54 n n C08 H23 6UO sing 55 n n C25 H24 6UO sing 56 n n # _atom_sites.entry_id 5KLX _atom_sites.fract_transf_matrix[1][1] 0.009269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004411 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029317 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6UO A 1 201 200 6UO 110 . F 3 MG A 1 202 2 MG MG . G 4 IMD A 1 203 1 IMD IMD . H 5 PEG A 1 204 1 PEG PEG . I 2 6UO B 1 200 200 6UO 110 . J 2 6UO C 1 200 200 6UO 110 . K 2 6UO D 1 201 200 6UO 110 . L 3 MG D 1 202 1 MG MG . M 4 IMD D 1 203 2 IMD IMD . N 6 HOH A 1 301 83 HOH HOH . N 6 HOH A 2 302 17 HOH HOH . N 6 HOH A 3 303 11 HOH HOH . N 6 HOH A 4 304 53 HOH HOH . N 6 HOH A 5 305 103 HOH HOH . N 6 HOH A 6 306 76 HOH HOH . N 6 HOH A 7 307 36 HOH HOH . N 6 HOH A 8 308 63 HOH HOH . N 6 HOH A 9 309 84 HOH HOH . N 6 HOH A 10 310 51 HOH HOH . N 6 HOH A 11 311 30 HOH HOH . N 6 HOH A 12 312 44 HOH HOH . N 6 HOH A 13 313 2 HOH HOH . N 6 HOH A 14 314 70 HOH HOH . N 6 HOH A 15 315 60 HOH HOH . N 6 HOH A 16 316 85 HOH HOH . N 6 HOH A 17 317 89 HOH HOH . N 6 HOH A 18 318 22 HOH HOH . N 6 HOH A 19 319 12 HOH HOH . N 6 HOH A 20 320 128 HOH HOH . N 6 HOH A 21 321 67 HOH HOH . N 6 HOH A 22 322 41 HOH HOH . N 6 HOH A 23 323 5 HOH HOH . N 6 HOH A 24 324 4 HOH HOH . N 6 HOH A 25 325 1 HOH HOH . N 6 HOH A 26 326 122 HOH HOH . N 6 HOH A 27 327 68 HOH HOH . N 6 HOH A 28 328 20 HOH HOH . N 6 HOH A 29 329 88 HOH HOH . N 6 HOH A 30 330 13 HOH HOH . N 6 HOH A 31 331 105 HOH HOH . N 6 HOH A 32 332 42 HOH HOH . N 6 HOH A 33 333 3 HOH HOH . N 6 HOH A 34 334 127 HOH HOH . N 6 HOH A 35 335 32 HOH HOH . N 6 HOH A 36 336 54 HOH HOH . N 6 HOH A 37 337 126 HOH HOH . N 6 HOH A 38 338 86 HOH HOH . N 6 HOH A 39 339 102 HOH HOH . N 6 HOH A 40 340 106 HOH HOH . N 6 HOH A 41 341 107 HOH HOH . N 6 HOH A 42 342 18 HOH HOH . N 6 HOH A 43 343 35 HOH HOH . N 6 HOH A 44 344 34 HOH HOH . N 6 HOH A 45 345 43 HOH HOH . N 6 HOH A 46 346 64 HOH HOH . N 6 HOH A 47 347 104 HOH HOH . N 6 HOH A 48 348 87 HOH HOH . N 6 HOH A 49 349 125 HOH HOH . N 6 HOH A 50 350 80 HOH HOH . N 6 HOH A 51 351 81 HOH HOH . N 6 HOH A 52 352 56 HOH HOH . N 6 HOH A 53 353 72 HOH HOH . N 6 HOH A 54 354 101 HOH HOH . N 6 HOH A 55 355 62 HOH HOH . N 6 HOH A 56 356 137 HOH HOH . N 6 HOH A 57 357 58 HOH HOH . N 6 HOH A 58 358 120 HOH HOH . N 6 HOH A 59 359 52 HOH HOH . O 6 HOH B 1 301 94 HOH HOH . O 6 HOH B 2 302 109 HOH HOH . O 6 HOH B 3 303 79 HOH HOH . O 6 HOH B 4 304 9 HOH HOH . O 6 HOH B 5 305 49 HOH HOH . O 6 HOH B 6 306 39 HOH HOH . O 6 HOH B 7 307 40 HOH HOH . O 6 HOH B 8 308 37 HOH HOH . O 6 HOH B 9 309 130 HOH HOH . O 6 HOH B 10 310 23 HOH HOH . O 6 HOH B 11 311 47 HOH HOH . O 6 HOH B 12 312 90 HOH HOH . O 6 HOH B 13 313 112 HOH HOH . O 6 HOH B 14 314 26 HOH HOH . O 6 HOH B 15 315 91 HOH HOH . O 6 HOH B 16 316 66 HOH HOH . O 6 HOH B 17 317 93 HOH HOH . O 6 HOH B 18 318 92 HOH HOH . O 6 HOH B 19 319 82 HOH HOH . P 6 HOH C 1 301 24 HOH HOH . P 6 HOH C 2 302 57 HOH HOH . P 6 HOH C 3 303 74 HOH HOH . P 6 HOH C 4 304 124 HOH HOH . P 6 HOH C 5 305 48 HOH HOH . P 6 HOH C 6 306 108 HOH HOH . P 6 HOH C 7 307 97 HOH HOH . P 6 HOH C 8 308 59 HOH HOH . P 6 HOH C 9 309 14 HOH HOH . P 6 HOH C 10 310 98 HOH HOH . P 6 HOH C 11 311 10 HOH HOH . P 6 HOH C 12 312 114 HOH HOH . P 6 HOH C 13 313 7 HOH HOH . P 6 HOH C 14 314 131 HOH HOH . P 6 HOH C 15 315 115 HOH HOH . P 6 HOH C 16 316 113 HOH HOH . P 6 HOH C 17 317 55 HOH HOH . P 6 HOH C 18 318 61 HOH HOH . P 6 HOH C 19 319 75 HOH HOH . P 6 HOH C 20 320 116 HOH HOH . P 6 HOH C 21 321 121 HOH HOH . Q 6 HOH D 1 301 45 HOH HOH . Q 6 HOH D 2 302 27 HOH HOH . Q 6 HOH D 3 303 21 HOH HOH . Q 6 HOH D 4 304 50 HOH HOH . Q 6 HOH D 5 305 25 HOH HOH . Q 6 HOH D 6 306 77 HOH HOH . Q 6 HOH D 7 307 65 HOH HOH . Q 6 HOH D 8 308 118 HOH HOH . Q 6 HOH D 9 309 19 HOH HOH . Q 6 HOH D 10 310 129 HOH HOH . Q 6 HOH D 11 311 15 HOH HOH . Q 6 HOH D 12 312 38 HOH HOH . Q 6 HOH D 13 313 29 HOH HOH . Q 6 HOH D 14 314 46 HOH HOH . Q 6 HOH D 15 315 33 HOH HOH . Q 6 HOH D 16 316 133 HOH HOH . Q 6 HOH D 17 317 28 HOH HOH . Q 6 HOH D 18 318 8 HOH HOH . Q 6 HOH D 19 319 31 HOH HOH . Q 6 HOH D 20 320 6 HOH HOH . Q 6 HOH D 21 321 111 HOH HOH . Q 6 HOH D 22 322 73 HOH HOH . Q 6 HOH D 23 323 123 HOH HOH . Q 6 HOH D 24 324 119 HOH HOH . Q 6 HOH D 25 325 117 HOH HOH . Q 6 HOH D 26 326 132 HOH HOH . Q 6 HOH D 27 327 110 HOH HOH . Q 6 HOH D 28 328 100 HOH HOH . Q 6 HOH D 29 329 134 HOH HOH . Q 6 HOH D 30 330 99 HOH HOH . Q 6 HOH D 31 331 136 HOH HOH . Q 6 HOH D 32 332 16 HOH HOH . Q 6 HOH D 33 333 69 HOH HOH . Q 6 HOH D 34 334 96 HOH HOH . Q 6 HOH D 35 335 71 HOH HOH . Q 6 HOH D 36 336 78 HOH HOH . Q 6 HOH D 37 337 95 HOH HOH . Q 6 HOH D 38 338 138 HOH HOH . Q 6 HOH D 39 339 135 HOH HOH . Q 6 HOH D 40 340 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 6UO . . . E 2 -34.84 19.161 155.775 1 18.78 ? C11 6UO 201 A 1 HETATM 2 C C14 6UO . . . E 2 -37.749 17.444 154.57 1 44.74 ? C14 6UO 201 A 1 HETATM 3 C C17 6UO . . . E 2 -38.081 14.786 151.886 1 59.28 ? C17 6UO 201 A 1 HETATM 4 C C18 6UO . . . E 2 -39.426 14.483 152.032 1 59.56 ? C18 6UO 201 A 1 HETATM 5 C C15 6UO . . . E 2 -38.325 16.361 153.659 1 47.42 ? C15 6UO 201 A 1 HETATM 6 C C16 6UO . . . E 2 -37.519 15.744 152.717 1 54.01 ? C16 6UO 201 A 1 HETATM 7 C C20 6UO . . . E 2 -39.661 16.007 153.751 1 44.94 ? C20 6UO 201 A 1 HETATM 8 C C24 6UO . . . E 2 -32.24 14.204 156.035 1 30.02 ? C24 6UO 201 A 1 HETATM 9 C C23 6UO . . . E 2 -32.62 15.586 155.562 1 17.15 ? C23 6UO 201 A 1 HETATM 10 C C26 6UO . . . E 2 -31.226 12.795 157.7 1 18.45 ? C26 6UO 201 A 1 HETATM 11 C C27 6UO . . . E 2 -31.54 11.669 156.937 1 18.99 ? C27 6UO 201 A 1 HETATM 12 C C28 6UO . . . E 2 -32.246 11.827 155.742 1 30.09 ? C28 6UO 201 A 1 HETATM 13 C C29 6UO . . . E 2 -32.594 13.087 155.275 1 27.17 ? C29 6UO 201 A 1 HETATM 14 C C12 6UO . . . E 2 -36.054 18.249 155.983 1 26.2 ? C12 6UO 201 A 1 HETATM 15 C C04 6UO . . . E 2 -33.236 17.188 152.307 1 28.94 ? C04 6UO 201 A 1 HETATM 16 C C05 6UO . . . E 2 -32.996 18.129 151.148 1 29.04 ? C05 6UO 201 A 1 HETATM 17 C C06 6UO . . . E 2 -32.902 19.498 151.636 1 32.03 ? C06 6UO 201 A 1 HETATM 18 C C07 6UO . . . E 2 -31.764 19.711 152.519 1 24.52 ? C07 6UO 201 A 1 HETATM 19 C C08 6UO . . . E 2 -31.792 18.797 153.736 1 19.11 ? C08 6UO 201 A 1 HETATM 20 C C09 6UO . . . E 2 -32.807 19.306 154.713 1 18.98 ? C09 6UO 201 A 1 HETATM 21 C C25 6UO . . . E 2 -31.565 14.058 157.244 1 22.71 ? C25 6UO 201 A 1 HETATM 22 N N03 6UO . . . E 2 -32.165 17.368 153.393 1 28.49 ? N03 6UO 201 A 1 HETATM 23 N N19 6UO . . . E 2 -40.165 15.09 152.947 1 55.45 ? N19 6UO 201 A 1 HETATM 24 O O01 6UO . . . E 2 -31.351 14.983 153.207 1 37.16 ? O01 6UO 201 A 1 HETATM 25 O O10 6UO . . . E 2 -33.824 18.448 155.114 1 18.39 ? O10 6UO 201 A 1 HETATM 26 O O13 6UO . . . E 2 -36.373 17.557 154.8 1 38.59 ? O13 6UO 201 A 1 HETATM 27 O O21 6UO . . . E 2 -38.484 18.228 155.063 1 48.19 ? O21 6UO 201 A 1 HETATM 28 O O22 6UO . . . E 2 -32.769 20.424 155.145 1 22.19 ? O22 6UO 201 A 1 HETATM 29 O O30 6UO . . . E 2 -30.172 16.324 154.675 1 30.39 ? O30 6UO 201 A 1 HETATM 30 S S02 6UO . . . E 2 -31.526 16.039 154.199 1 27.46 ? S02 6UO 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #