data_5KLZ # _model_server_result.job_id qGbpEaa7CNWV0-ZQdgcyRA _model_server_result.datetime_utc '2024-10-20 19:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5klz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5KLZ # _exptl.entry_id 5KLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KLZ _cell.length_a 45.831 _cell.length_b 75.921 _cell.length_c 80.794 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5KLZ _atom_sites.fract_transf_matrix[1][1] 0.021819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP B 1 201 1 AMP AMP . D 3 EDO B 1 202 1 EDO EDO . E 4 HOH B 1 301 49 HOH HOH . E 4 HOH B 2 302 38 HOH HOH . E 4 HOH B 3 303 97 HOH HOH . E 4 HOH B 4 304 113 HOH HOH . E 4 HOH B 5 305 162 HOH HOH . E 4 HOH B 6 306 88 HOH HOH . E 4 HOH B 7 307 6 HOH HOH . E 4 HOH B 8 308 122 HOH HOH . E 4 HOH B 9 309 139 HOH HOH . E 4 HOH B 10 310 91 HOH HOH . E 4 HOH B 11 311 217 HOH HOH . E 4 HOH B 12 312 216 HOH HOH . E 4 HOH B 13 313 145 HOH HOH . E 4 HOH B 14 314 83 HOH HOH . E 4 HOH B 15 315 48 HOH HOH . E 4 HOH B 16 316 77 HOH HOH . E 4 HOH B 17 317 128 HOH HOH . E 4 HOH B 18 318 9 HOH HOH . E 4 HOH B 19 319 124 HOH HOH . E 4 HOH B 20 320 222 HOH HOH . E 4 HOH B 21 321 232 HOH HOH . E 4 HOH B 22 322 23 HOH HOH . E 4 HOH B 23 323 17 HOH HOH . E 4 HOH B 24 324 90 HOH HOH . E 4 HOH B 25 325 117 HOH HOH . E 4 HOH B 26 326 86 HOH HOH . E 4 HOH B 27 327 152 HOH HOH . E 4 HOH B 28 328 178 HOH HOH . E 4 HOH B 29 329 56 HOH HOH . E 4 HOH B 30 330 64 HOH HOH . E 4 HOH B 31 331 169 HOH HOH . E 4 HOH B 32 332 134 HOH HOH . E 4 HOH B 33 333 133 HOH HOH . E 4 HOH B 34 334 112 HOH HOH . E 4 HOH B 35 335 206 HOH HOH . E 4 HOH B 36 336 33 HOH HOH . E 4 HOH B 37 337 171 HOH HOH . E 4 HOH B 38 338 136 HOH HOH . E 4 HOH B 39 339 205 HOH HOH . E 4 HOH B 40 340 234 HOH HOH . E 4 HOH B 41 341 29 HOH HOH . E 4 HOH B 42 342 235 HOH HOH . E 4 HOH B 43 343 26 HOH HOH . E 4 HOH B 44 344 24 HOH HOH . E 4 HOH B 45 345 103 HOH HOH . E 4 HOH B 46 346 73 HOH HOH . E 4 HOH B 47 347 200 HOH HOH . E 4 HOH B 48 348 18 HOH HOH . E 4 HOH B 49 349 7 HOH HOH . E 4 HOH B 50 350 127 HOH HOH . E 4 HOH B 51 351 95 HOH HOH . E 4 HOH B 52 352 34 HOH HOH . E 4 HOH B 53 353 132 HOH HOH . E 4 HOH B 54 354 43 HOH HOH . E 4 HOH B 55 355 239 HOH HOH . E 4 HOH B 56 356 70 HOH HOH . E 4 HOH B 57 357 188 HOH HOH . E 4 HOH B 58 358 236 HOH HOH . E 4 HOH B 59 359 245 HOH HOH . E 4 HOH B 60 360 135 HOH HOH . E 4 HOH B 61 361 89 HOH HOH . E 4 HOH B 62 362 158 HOH HOH . E 4 HOH B 63 363 50 HOH HOH . E 4 HOH B 64 364 66 HOH HOH . E 4 HOH B 65 365 218 HOH HOH . E 4 HOH B 66 366 208 HOH HOH . E 4 HOH B 67 367 181 HOH HOH . E 4 HOH B 68 368 168 HOH HOH . E 4 HOH B 69 369 102 HOH HOH . E 4 HOH B 70 370 71 HOH HOH . E 4 HOH B 71 371 52 HOH HOH . E 4 HOH B 72 372 167 HOH HOH . E 4 HOH B 73 373 100 HOH HOH . E 4 HOH B 74 374 75 HOH HOH . E 4 HOH B 75 375 221 HOH HOH . E 4 HOH B 76 376 46 HOH HOH . E 4 HOH B 77 377 226 HOH HOH . E 4 HOH B 78 378 176 HOH HOH . E 4 HOH B 79 379 160 HOH HOH . E 4 HOH B 80 380 130 HOH HOH . E 4 HOH B 81 381 247 HOH HOH . E 4 HOH B 82 382 107 HOH HOH . E 4 HOH B 83 383 110 HOH HOH . E 4 HOH B 84 384 231 HOH HOH . E 4 HOH B 85 385 225 HOH HOH . E 4 HOH B 86 386 68 HOH HOH . E 4 HOH B 87 387 220 HOH HOH . E 4 HOH B 88 388 175 HOH HOH . E 4 HOH B 89 389 51 HOH HOH . E 4 HOH B 90 390 244 HOH HOH . E 4 HOH B 91 391 119 HOH HOH . E 4 HOH B 92 392 211 HOH HOH . E 4 HOH B 93 393 131 HOH HOH . E 4 HOH B 94 394 177 HOH HOH . E 4 HOH B 95 395 143 HOH HOH . E 4 HOH B 96 396 182 HOH HOH . E 4 HOH B 97 397 179 HOH HOH . E 4 HOH B 98 398 118 HOH HOH . E 4 HOH B 99 399 142 HOH HOH . E 4 HOH B 100 400 209 HOH HOH . E 4 HOH B 101 401 84 HOH HOH . E 4 HOH B 102 402 123 HOH HOH . F 4 HOH A 1 201 250 HOH HOH . F 4 HOH A 2 202 141 HOH HOH . F 4 HOH A 3 203 157 HOH HOH . F 4 HOH A 4 204 144 HOH HOH . F 4 HOH A 5 205 170 HOH HOH . F 4 HOH A 6 206 227 HOH HOH . F 4 HOH A 7 207 242 HOH HOH . F 4 HOH A 8 208 129 HOH HOH . F 4 HOH A 9 209 20 HOH HOH . F 4 HOH A 10 210 99 HOH HOH . F 4 HOH A 11 211 243 HOH HOH . F 4 HOH A 12 212 22 HOH HOH . F 4 HOH A 13 213 156 HOH HOH . F 4 HOH A 14 214 185 HOH HOH . F 4 HOH A 15 215 25 HOH HOH . F 4 HOH A 16 216 249 HOH HOH . F 4 HOH A 17 217 81 HOH HOH . F 4 HOH A 18 218 21 HOH HOH . F 4 HOH A 19 219 138 HOH HOH . F 4 HOH A 20 220 76 HOH HOH . F 4 HOH A 21 221 78 HOH HOH . F 4 HOH A 22 222 15 HOH HOH . F 4 HOH A 23 223 229 HOH HOH . F 4 HOH A 24 224 215 HOH HOH . F 4 HOH A 25 225 19 HOH HOH . F 4 HOH A 26 226 32 HOH HOH . F 4 HOH A 27 227 65 HOH HOH . F 4 HOH A 28 228 60 HOH HOH . F 4 HOH A 29 229 230 HOH HOH . F 4 HOH A 30 230 10 HOH HOH . F 4 HOH A 31 231 8 HOH HOH . F 4 HOH A 32 232 35 HOH HOH . F 4 HOH A 33 233 114 HOH HOH . F 4 HOH A 34 234 13 HOH HOH . F 4 HOH A 35 235 2 HOH HOH . F 4 HOH A 36 236 36 HOH HOH . F 4 HOH A 37 237 85 HOH HOH . F 4 HOH A 38 238 55 HOH HOH . F 4 HOH A 39 239 28 HOH HOH . F 4 HOH A 40 240 4 HOH HOH . F 4 HOH A 41 241 14 HOH HOH . F 4 HOH A 42 242 1 HOH HOH . F 4 HOH A 43 243 45 HOH HOH . F 4 HOH A 44 244 58 HOH HOH . F 4 HOH A 45 245 121 HOH HOH . F 4 HOH A 46 246 11 HOH HOH . F 4 HOH A 47 247 149 HOH HOH . F 4 HOH A 48 248 87 HOH HOH . F 4 HOH A 49 249 37 HOH HOH . F 4 HOH A 50 250 79 HOH HOH . F 4 HOH A 51 251 53 HOH HOH . F 4 HOH A 52 252 42 HOH HOH . F 4 HOH A 53 253 3 HOH HOH . F 4 HOH A 54 254 59 HOH HOH . F 4 HOH A 55 255 125 HOH HOH . F 4 HOH A 56 256 12 HOH HOH . F 4 HOH A 57 257 104 HOH HOH . F 4 HOH A 58 258 67 HOH HOH . F 4 HOH A 59 259 30 HOH HOH . F 4 HOH A 60 260 109 HOH HOH . F 4 HOH A 61 261 69 HOH HOH . F 4 HOH A 62 262 199 HOH HOH . F 4 HOH A 63 263 93 HOH HOH . F 4 HOH A 64 264 153 HOH HOH . F 4 HOH A 65 265 40 HOH HOH . F 4 HOH A 66 266 202 HOH HOH . F 4 HOH A 67 267 101 HOH HOH . F 4 HOH A 68 268 44 HOH HOH . F 4 HOH A 69 269 47 HOH HOH . F 4 HOH A 70 270 5 HOH HOH . F 4 HOH A 71 271 62 HOH HOH . F 4 HOH A 72 272 108 HOH HOH . F 4 HOH A 73 273 105 HOH HOH . F 4 HOH A 74 274 57 HOH HOH . F 4 HOH A 75 275 140 HOH HOH . F 4 HOH A 76 276 115 HOH HOH . F 4 HOH A 77 277 126 HOH HOH . F 4 HOH A 78 278 74 HOH HOH . F 4 HOH A 79 279 16 HOH HOH . F 4 HOH A 80 280 27 HOH HOH . F 4 HOH A 81 281 63 HOH HOH . F 4 HOH A 82 282 212 HOH HOH . F 4 HOH A 83 283 111 HOH HOH . F 4 HOH A 84 284 148 HOH HOH . F 4 HOH A 85 285 219 HOH HOH . F 4 HOH A 86 286 184 HOH HOH . F 4 HOH A 87 287 41 HOH HOH . F 4 HOH A 88 288 31 HOH HOH . F 4 HOH A 89 289 248 HOH HOH . F 4 HOH A 90 290 228 HOH HOH . F 4 HOH A 91 291 198 HOH HOH . F 4 HOH A 92 292 203 HOH HOH . F 4 HOH A 93 293 214 HOH HOH . F 4 HOH A 94 294 186 HOH HOH . F 4 HOH A 95 295 72 HOH HOH . F 4 HOH A 96 296 116 HOH HOH . F 4 HOH A 97 297 92 HOH HOH . F 4 HOH A 98 298 237 HOH HOH . F 4 HOH A 99 299 246 HOH HOH . F 4 HOH A 100 300 54 HOH HOH . F 4 HOH A 101 301 106 HOH HOH . F 4 HOH A 102 302 223 HOH HOH . F 4 HOH A 103 303 210 HOH HOH . F 4 HOH A 104 304 80 HOH HOH . F 4 HOH A 105 305 98 HOH HOH . F 4 HOH A 106 306 94 HOH HOH . F 4 HOH A 107 307 172 HOH HOH . F 4 HOH A 108 308 207 HOH HOH . F 4 HOH A 109 309 180 HOH HOH . F 4 HOH A 110 310 187 HOH HOH . F 4 HOH A 111 311 233 HOH HOH . F 4 HOH A 112 312 194 HOH HOH . F 4 HOH A 113 313 192 HOH HOH . F 4 HOH A 114 314 146 HOH HOH . F 4 HOH A 115 315 173 HOH HOH . F 4 HOH A 116 316 174 HOH HOH . F 4 HOH A 117 317 164 HOH HOH . F 4 HOH A 118 318 120 HOH HOH . F 4 HOH A 119 319 159 HOH HOH . F 4 HOH A 120 320 161 HOH HOH . F 4 HOH A 121 321 96 HOH HOH . F 4 HOH A 122 322 201 HOH HOH . F 4 HOH A 123 323 251 HOH HOH . F 4 HOH A 124 324 238 HOH HOH . F 4 HOH A 125 325 193 HOH HOH . F 4 HOH A 126 326 61 HOH HOH . F 4 HOH A 127 327 191 HOH HOH . F 4 HOH A 128 328 204 HOH HOH . F 4 HOH A 129 329 240 HOH HOH . F 4 HOH A 130 330 154 HOH HOH . F 4 HOH A 131 331 241 HOH HOH . F 4 HOH A 132 332 213 HOH HOH . F 4 HOH A 133 333 137 HOH HOH . F 4 HOH A 134 334 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 2 40.36 31.526 49.857 1 18.26 ? P AMP 201 B 1 HETATM 2 O O1P AMP . . . C 2 41.267 31.521 48.647 1 27.6 ? O1P AMP 201 B 1 HETATM 3 O O2P AMP . . . C 2 40.216 32.879 50.509 1 29.2 ? O2P AMP 201 B 1 HETATM 4 O O3P AMP . . . C 2 39.057 30.798 49.664 1 18.44 ? O3P AMP 201 B 1 HETATM 5 O O5' AMP . . . C 2 41.142 30.647 50.933 1 30.64 ? O5' AMP 201 B 1 HETATM 6 C C5' AMP . . . C 2 40.549 30.323 52.19 1 24.89 ? C5' AMP 201 B 1 HETATM 7 C C4' AMP . . . C 2 41.231 31.031 53.337 1 18.03 ? C4' AMP 201 B 1 HETATM 8 O O4' AMP . . . C 2 40.683 30.534 54.588 1 18.68 ? O4' AMP 201 B 1 HETATM 9 C C3' AMP . . . C 2 42.749 30.837 53.414 1 20.09 ? C3' AMP 201 B 1 HETATM 10 O O3' AMP . . . C 2 43.384 32.085 53.711 1 15.8 ? O3' AMP 201 B 1 HETATM 11 C C2' AMP . . . C 2 42.921 29.849 54.573 1 17.38 ? C2' AMP 201 B 1 HETATM 12 O O2' AMP . . . C 2 44.148 29.943 55.264 1 18.13 ? O2' AMP 201 B 1 HETATM 13 C C1' AMP . . . C 2 41.73 30.191 55.465 1 18.48 ? C1' AMP 201 B 1 HETATM 14 N N9 AMP . . . C 2 41.274 29.081 56.308 1 18.68 ? N9 AMP 201 B 1 HETATM 15 C C8 AMP . . . C 2 40.96 27.842 55.884 1 21.1 ? C8 AMP 201 B 1 HETATM 16 N N7 AMP . . . C 2 40.583 27.055 56.925 1 20.32 ? N7 AMP 201 B 1 HETATM 17 C C5 AMP . . . C 2 40.659 27.799 58.048 1 17.44 ? C5 AMP 201 B 1 HETATM 18 C C6 AMP . . . C 2 40.399 27.598 59.493 1 19.56 ? C6 AMP 201 B 1 HETATM 19 N N6 AMP . . . C 2 39.983 26.396 59.954 1 24.92 ? N6 AMP 201 B 1 HETATM 20 N N1 AMP . . . C 2 40.602 28.644 60.325 1 18.51 ? N1 AMP 201 B 1 HETATM 21 C C2 AMP . . . C 2 41.021 29.843 59.868 1 18.2 ? C2 AMP 201 B 1 HETATM 22 N N3 AMP . . . C 2 41.275 30.097 58.568 1 16.13 ? N3 AMP 201 B 1 HETATM 23 C C4 AMP . . . C 2 41.11 29.135 57.631 1 18.55 ? C4 AMP 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #