data_5KM1 # _model_server_result.job_id sHaUHnQ9MlVfd5iYJyP-Qw _model_server_result.datetime_utc '2024-10-22 00:43:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5km1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5KM1 # _exptl.entry_id 5KM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.48 _cell.angle_gamma 90 _cell.entry_id 5KM1 _cell.length_a 78.624 _cell.length_b 46.332 _cell.length_c 64.11 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 123 n n C1 C2 EDO sing 124 n n C1 H11 EDO sing 125 n n C1 H12 EDO sing 126 n n O1 HO1 EDO sing 127 n n C2 O2 EDO sing 128 n n C2 H21 EDO sing 129 n n C2 H22 EDO sing 130 n n O2 HO2 EDO sing 131 n n # _atom_sites.entry_id 5KM1 _atom_sites.fract_transf_matrix[1][1] 0.012719 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000997 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 201 1 5GP 5GP . D 3 EDO A 1 202 1 EDO EDO . E 4 HOH A 1 301 148 HOH HOH . E 4 HOH A 2 302 277 HOH HOH . E 4 HOH A 3 303 184 HOH HOH . E 4 HOH A 4 304 299 HOH HOH . E 4 HOH A 5 305 318 HOH HOH . E 4 HOH A 6 306 146 HOH HOH . E 4 HOH A 7 307 36 HOH HOH . E 4 HOH A 8 308 297 HOH HOH . E 4 HOH A 9 309 63 HOH HOH . E 4 HOH A 10 310 124 HOH HOH . E 4 HOH A 11 311 175 HOH HOH . E 4 HOH A 12 312 105 HOH HOH . E 4 HOH A 13 313 302 HOH HOH . E 4 HOH A 14 314 51 HOH HOH . E 4 HOH A 15 315 143 HOH HOH . E 4 HOH A 16 316 88 HOH HOH . E 4 HOH A 17 317 48 HOH HOH . E 4 HOH A 18 318 128 HOH HOH . E 4 HOH A 19 319 31 HOH HOH . E 4 HOH A 20 320 305 HOH HOH . E 4 HOH A 21 321 17 HOH HOH . E 4 HOH A 22 322 190 HOH HOH . E 4 HOH A 23 323 42 HOH HOH . E 4 HOH A 24 324 45 HOH HOH . E 4 HOH A 25 325 225 HOH HOH . E 4 HOH A 26 326 126 HOH HOH . E 4 HOH A 27 327 269 HOH HOH . E 4 HOH A 28 328 8 HOH HOH . E 4 HOH A 29 329 246 HOH HOH . E 4 HOH A 30 330 308 HOH HOH . E 4 HOH A 31 331 6 HOH HOH . E 4 HOH A 32 332 22 HOH HOH . E 4 HOH A 33 333 265 HOH HOH . E 4 HOH A 34 334 28 HOH HOH . E 4 HOH A 35 335 131 HOH HOH . E 4 HOH A 36 336 47 HOH HOH . E 4 HOH A 37 337 106 HOH HOH . E 4 HOH A 38 338 85 HOH HOH . E 4 HOH A 39 339 236 HOH HOH . E 4 HOH A 40 340 103 HOH HOH . E 4 HOH A 41 341 179 HOH HOH . E 4 HOH A 42 342 10 HOH HOH . E 4 HOH A 43 343 33 HOH HOH . E 4 HOH A 44 344 164 HOH HOH . E 4 HOH A 45 345 309 HOH HOH . E 4 HOH A 46 346 26 HOH HOH . E 4 HOH A 47 347 116 HOH HOH . E 4 HOH A 48 348 176 HOH HOH . E 4 HOH A 49 349 239 HOH HOH . E 4 HOH A 50 350 89 HOH HOH . E 4 HOH A 51 351 142 HOH HOH . E 4 HOH A 52 352 263 HOH HOH . E 4 HOH A 53 353 15 HOH HOH . E 4 HOH A 54 354 125 HOH HOH . E 4 HOH A 55 355 65 HOH HOH . E 4 HOH A 56 356 61 HOH HOH . E 4 HOH A 57 357 215 HOH HOH . E 4 HOH A 58 358 30 HOH HOH . E 4 HOH A 59 359 97 HOH HOH . E 4 HOH A 60 360 210 HOH HOH . E 4 HOH A 61 361 14 HOH HOH . E 4 HOH A 62 362 107 HOH HOH . E 4 HOH A 63 363 25 HOH HOH . E 4 HOH A 64 364 326 HOH HOH . E 4 HOH A 65 365 46 HOH HOH . E 4 HOH A 66 366 54 HOH HOH . E 4 HOH A 67 367 172 HOH HOH . E 4 HOH A 68 368 247 HOH HOH . E 4 HOH A 69 369 55 HOH HOH . E 4 HOH A 70 370 96 HOH HOH . E 4 HOH A 71 371 174 HOH HOH . E 4 HOH A 72 372 23 HOH HOH . E 4 HOH A 73 373 261 HOH HOH . E 4 HOH A 74 374 2 HOH HOH . E 4 HOH A 75 375 169 HOH HOH . E 4 HOH A 76 376 266 HOH HOH . E 4 HOH A 77 377 133 HOH HOH . E 4 HOH A 78 378 32 HOH HOH . E 4 HOH A 79 379 271 HOH HOH . E 4 HOH A 80 380 78 HOH HOH . E 4 HOH A 81 381 181 HOH HOH . E 4 HOH A 82 382 307 HOH HOH . E 4 HOH A 83 383 59 HOH HOH . E 4 HOH A 84 384 253 HOH HOH . E 4 HOH A 85 385 141 HOH HOH . E 4 HOH A 86 386 288 HOH HOH . E 4 HOH A 87 387 325 HOH HOH . E 4 HOH A 88 388 115 HOH HOH . E 4 HOH A 89 389 165 HOH HOH . E 4 HOH A 90 390 276 HOH HOH . E 4 HOH A 91 391 100 HOH HOH . E 4 HOH A 92 392 43 HOH HOH . E 4 HOH A 93 393 216 HOH HOH . E 4 HOH A 94 394 203 HOH HOH . E 4 HOH A 95 395 151 HOH HOH . E 4 HOH A 96 396 38 HOH HOH . E 4 HOH A 97 397 183 HOH HOH . E 4 HOH A 98 398 113 HOH HOH . E 4 HOH A 99 399 320 HOH HOH . E 4 HOH A 100 400 188 HOH HOH . E 4 HOH A 101 401 24 HOH HOH . E 4 HOH A 102 402 64 HOH HOH . E 4 HOH A 103 403 40 HOH HOH . E 4 HOH A 104 404 152 HOH HOH . E 4 HOH A 105 405 316 HOH HOH . E 4 HOH A 106 406 11 HOH HOH . E 4 HOH A 107 407 223 HOH HOH . E 4 HOH A 108 408 196 HOH HOH . E 4 HOH A 109 409 62 HOH HOH . E 4 HOH A 110 410 282 HOH HOH . E 4 HOH A 111 411 92 HOH HOH . E 4 HOH A 112 412 66 HOH HOH . E 4 HOH A 113 413 84 HOH HOH . E 4 HOH A 114 414 273 HOH HOH . E 4 HOH A 115 415 166 HOH HOH . E 4 HOH A 116 416 262 HOH HOH . E 4 HOH A 117 417 4 HOH HOH . E 4 HOH A 118 418 294 HOH HOH . E 4 HOH A 119 419 230 HOH HOH . E 4 HOH A 120 420 69 HOH HOH . E 4 HOH A 121 421 280 HOH HOH . E 4 HOH A 122 422 323 HOH HOH . E 4 HOH A 123 423 232 HOH HOH . E 4 HOH A 124 424 74 HOH HOH . E 4 HOH A 125 425 298 HOH HOH . E 4 HOH A 126 426 313 HOH HOH . E 4 HOH A 127 427 301 HOH HOH . E 4 HOH A 128 428 243 HOH HOH . E 4 HOH A 129 429 191 HOH HOH . E 4 HOH A 130 430 284 HOH HOH . E 4 HOH A 131 431 204 HOH HOH . E 4 HOH A 132 432 138 HOH HOH . E 4 HOH A 133 433 292 HOH HOH . E 4 HOH A 134 434 171 HOH HOH . E 4 HOH A 135 435 293 HOH HOH . E 4 HOH A 136 436 270 HOH HOH . E 4 HOH A 137 437 217 HOH HOH . E 4 HOH A 138 438 121 HOH HOH . E 4 HOH A 139 439 195 HOH HOH . E 4 HOH A 140 440 99 HOH HOH . E 4 HOH A 141 441 291 HOH HOH . E 4 HOH A 142 442 123 HOH HOH . E 4 HOH A 143 443 136 HOH HOH . E 4 HOH A 144 444 158 HOH HOH . E 4 HOH A 145 445 311 HOH HOH . E 4 HOH A 146 446 231 HOH HOH . E 4 HOH A 147 447 306 HOH HOH . E 4 HOH A 148 448 283 HOH HOH . E 4 HOH A 149 449 139 HOH HOH . E 4 HOH A 150 450 241 HOH HOH . E 4 HOH A 151 451 82 HOH HOH . E 4 HOH A 152 452 310 HOH HOH . E 4 HOH A 153 453 319 HOH HOH . E 4 HOH A 154 454 93 HOH HOH . E 4 HOH A 155 455 226 HOH HOH . E 4 HOH A 156 456 118 HOH HOH . E 4 HOH A 157 457 120 HOH HOH . E 4 HOH A 158 458 289 HOH HOH . E 4 HOH A 159 459 315 HOH HOH . E 4 HOH A 160 460 104 HOH HOH . E 4 HOH A 161 461 227 HOH HOH . E 4 HOH A 162 462 135 HOH HOH . E 4 HOH A 163 463 149 HOH HOH . E 4 HOH A 164 464 324 HOH HOH . E 4 HOH A 165 465 91 HOH HOH . E 4 HOH A 166 466 150 HOH HOH . E 4 HOH A 167 467 112 HOH HOH . E 4 HOH A 168 468 157 HOH HOH . E 4 HOH A 169 469 114 HOH HOH . E 4 HOH A 170 470 209 HOH HOH . E 4 HOH A 171 471 278 HOH HOH . F 4 HOH B 1 201 75 HOH HOH . F 4 HOH B 2 202 235 HOH HOH . F 4 HOH B 3 203 290 HOH HOH . F 4 HOH B 4 204 206 HOH HOH . F 4 HOH B 5 205 73 HOH HOH . F 4 HOH B 6 206 44 HOH HOH . F 4 HOH B 7 207 224 HOH HOH . F 4 HOH B 8 208 257 HOH HOH . F 4 HOH B 9 209 3 HOH HOH . F 4 HOH B 10 210 145 HOH HOH . F 4 HOH B 11 211 285 HOH HOH . F 4 HOH B 12 212 7 HOH HOH . F 4 HOH B 13 213 37 HOH HOH . F 4 HOH B 14 214 110 HOH HOH . F 4 HOH B 15 215 35 HOH HOH . F 4 HOH B 16 216 130 HOH HOH . F 4 HOH B 17 217 56 HOH HOH . F 4 HOH B 18 218 95 HOH HOH . F 4 HOH B 19 219 101 HOH HOH . F 4 HOH B 20 220 185 HOH HOH . F 4 HOH B 21 221 279 HOH HOH . F 4 HOH B 22 222 50 HOH HOH . F 4 HOH B 23 223 21 HOH HOH . F 4 HOH B 24 224 170 HOH HOH . F 4 HOH B 25 225 267 HOH HOH . F 4 HOH B 26 226 173 HOH HOH . F 4 HOH B 27 227 81 HOH HOH . F 4 HOH B 28 228 213 HOH HOH . F 4 HOH B 29 229 198 HOH HOH . F 4 HOH B 30 230 39 HOH HOH . F 4 HOH B 31 231 182 HOH HOH . F 4 HOH B 32 232 20 HOH HOH . F 4 HOH B 33 233 13 HOH HOH . F 4 HOH B 34 234 300 HOH HOH . F 4 HOH B 35 235 83 HOH HOH . F 4 HOH B 36 236 248 HOH HOH . F 4 HOH B 37 237 87 HOH HOH . F 4 HOH B 38 238 52 HOH HOH . F 4 HOH B 39 239 86 HOH HOH . F 4 HOH B 40 240 129 HOH HOH . F 4 HOH B 41 241 18 HOH HOH . F 4 HOH B 42 242 80 HOH HOH . F 4 HOH B 43 243 60 HOH HOH . F 4 HOH B 44 244 140 HOH HOH . F 4 HOH B 45 245 117 HOH HOH . F 4 HOH B 46 246 274 HOH HOH . F 4 HOH B 47 247 177 HOH HOH . F 4 HOH B 48 248 29 HOH HOH . F 4 HOH B 49 249 163 HOH HOH . F 4 HOH B 50 250 255 HOH HOH . F 4 HOH B 51 251 256 HOH HOH . F 4 HOH B 52 252 156 HOH HOH . F 4 HOH B 53 253 41 HOH HOH . F 4 HOH B 54 254 132 HOH HOH . F 4 HOH B 55 255 109 HOH HOH . F 4 HOH B 56 256 193 HOH HOH . F 4 HOH B 57 257 19 HOH HOH . F 4 HOH B 58 258 102 HOH HOH . F 4 HOH B 59 259 268 HOH HOH . F 4 HOH B 60 260 251 HOH HOH . F 4 HOH B 61 261 259 HOH HOH . F 4 HOH B 62 262 111 HOH HOH . F 4 HOH B 63 263 159 HOH HOH . F 4 HOH B 64 264 154 HOH HOH . F 4 HOH B 65 265 252 HOH HOH . F 4 HOH B 66 266 144 HOH HOH . F 4 HOH B 67 267 49 HOH HOH . F 4 HOH B 68 268 260 HOH HOH . F 4 HOH B 69 269 12 HOH HOH . F 4 HOH B 70 270 9 HOH HOH . F 4 HOH B 71 271 58 HOH HOH . F 4 HOH B 72 272 160 HOH HOH . F 4 HOH B 73 273 214 HOH HOH . F 4 HOH B 74 274 211 HOH HOH . F 4 HOH B 75 275 187 HOH HOH . F 4 HOH B 76 276 245 HOH HOH . F 4 HOH B 77 277 16 HOH HOH . F 4 HOH B 78 278 122 HOH HOH . F 4 HOH B 79 279 162 HOH HOH . F 4 HOH B 80 280 90 HOH HOH . F 4 HOH B 81 281 134 HOH HOH . F 4 HOH B 82 282 108 HOH HOH . F 4 HOH B 83 283 67 HOH HOH . F 4 HOH B 84 284 168 HOH HOH . F 4 HOH B 85 285 34 HOH HOH . F 4 HOH B 86 286 53 HOH HOH . F 4 HOH B 87 287 250 HOH HOH . F 4 HOH B 88 288 234 HOH HOH . F 4 HOH B 89 289 119 HOH HOH . F 4 HOH B 90 290 281 HOH HOH . F 4 HOH B 91 291 304 HOH HOH . F 4 HOH B 92 292 79 HOH HOH . F 4 HOH B 93 293 233 HOH HOH . F 4 HOH B 94 294 70 HOH HOH . F 4 HOH B 95 295 147 HOH HOH . F 4 HOH B 96 296 77 HOH HOH . F 4 HOH B 97 297 220 HOH HOH . F 4 HOH B 98 298 218 HOH HOH . F 4 HOH B 99 299 71 HOH HOH . F 4 HOH B 100 300 312 HOH HOH . F 4 HOH B 101 301 254 HOH HOH . F 4 HOH B 102 302 272 HOH HOH . F 4 HOH B 103 303 167 HOH HOH . F 4 HOH B 104 304 314 HOH HOH . F 4 HOH B 105 305 286 HOH HOH . F 4 HOH B 106 306 212 HOH HOH . F 4 HOH B 107 307 199 HOH HOH . F 4 HOH B 108 308 194 HOH HOH . F 4 HOH B 109 309 178 HOH HOH . F 4 HOH B 110 310 197 HOH HOH . F 4 HOH B 111 311 317 HOH HOH . F 4 HOH B 112 312 303 HOH HOH . F 4 HOH B 113 313 76 HOH HOH . F 4 HOH B 114 314 153 HOH HOH . F 4 HOH B 115 315 240 HOH HOH . F 4 HOH B 116 316 98 HOH HOH . F 4 HOH B 117 317 189 HOH HOH . F 4 HOH B 118 318 275 HOH HOH . F 4 HOH B 119 319 127 HOH HOH . F 4 HOH B 120 320 186 HOH HOH . F 4 HOH B 121 321 155 HOH HOH . F 4 HOH B 122 322 238 HOH HOH . F 4 HOH B 123 323 68 HOH HOH . F 4 HOH B 124 324 94 HOH HOH . F 4 HOH B 125 325 27 HOH HOH . F 4 HOH B 126 326 208 HOH HOH . F 4 HOH B 127 327 219 HOH HOH . F 4 HOH B 128 328 207 HOH HOH . F 4 HOH B 129 329 205 HOH HOH . F 4 HOH B 130 330 202 HOH HOH . F 4 HOH B 131 331 296 HOH HOH . F 4 HOH B 132 332 137 HOH HOH . F 4 HOH B 133 333 322 HOH HOH . F 4 HOH B 134 334 321 HOH HOH . F 4 HOH B 135 335 229 HOH HOH . F 4 HOH B 136 336 222 HOH HOH . F 4 HOH B 137 337 258 HOH HOH . F 4 HOH B 138 338 244 HOH HOH . F 4 HOH B 139 339 228 HOH HOH . F 4 HOH B 140 340 72 HOH HOH . F 4 HOH B 141 341 57 HOH HOH . F 4 HOH B 142 342 287 HOH HOH . F 4 HOH B 143 343 237 HOH HOH . F 4 HOH B 144 344 295 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -44.253 0.872 -17.021 1 28.02 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . D 3 -44.515 2.108 -16.348 1 26.12 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . D 3 -43.497 -0.052 -16.078 1 30.54 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . D 3 -43.193 -1.283 -16.744 1 32.05 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #