data_5KM2 # _model_server_result.job_id CYXytbdGJ5xKgCVXx_xPvg _model_server_result.datetime_utc '2024-11-14 07:00:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5km2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5KM2 # _exptl.entry_id 5KM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.49 _cell.angle_gamma 90 _cell.entry_id 5KM2 _cell.length_a 78.463 _cell.length_b 46.208 _cell.length_c 64.108 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 165 n n C1 C2 GOL sing 166 n n C1 H11 GOL sing 167 n n C1 H12 GOL sing 168 n n O1 HO1 GOL sing 169 n n C2 O2 GOL sing 170 n n C2 C3 GOL sing 171 n n C2 H2 GOL sing 172 n n O2 HO2 GOL sing 173 n n C3 O3 GOL sing 174 n n C3 H31 GOL sing 175 n n C3 H32 GOL sing 176 n n O3 HO3 GOL sing 177 n n # _atom_sites.entry_id 5KM2 _atom_sites.fract_transf_matrix[1][1] 0.012745 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 C5P A 1 201 1 C5P C5P . D 3 GOL A 1 202 1 GOL GOL . E 4 CL B 1 201 1 CL CL . F 5 HOH A 1 301 264 HOH HOH . F 5 HOH A 2 302 100 HOH HOH . F 5 HOH A 3 303 254 HOH HOH . F 5 HOH A 4 304 42 HOH HOH . F 5 HOH A 5 305 250 HOH HOH . F 5 HOH A 6 306 265 HOH HOH . F 5 HOH A 7 307 21 HOH HOH . F 5 HOH A 8 308 215 HOH HOH . F 5 HOH A 9 309 31 HOH HOH . F 5 HOH A 10 310 249 HOH HOH . F 5 HOH A 11 311 186 HOH HOH . F 5 HOH A 12 312 34 HOH HOH . F 5 HOH A 13 313 58 HOH HOH . F 5 HOH A 14 314 11 HOH HOH . F 5 HOH A 15 315 50 HOH HOH . F 5 HOH A 16 316 18 HOH HOH . F 5 HOH A 17 317 59 HOH HOH . F 5 HOH A 18 318 276 HOH HOH . F 5 HOH A 19 319 3 HOH HOH . F 5 HOH A 20 320 270 HOH HOH . F 5 HOH A 21 321 224 HOH HOH . F 5 HOH A 22 322 103 HOH HOH . F 5 HOH A 23 323 61 HOH HOH . F 5 HOH A 24 324 95 HOH HOH . F 5 HOH A 25 325 56 HOH HOH . F 5 HOH A 26 326 98 HOH HOH . F 5 HOH A 27 327 171 HOH HOH . F 5 HOH A 28 328 87 HOH HOH . F 5 HOH A 29 329 113 HOH HOH . F 5 HOH A 30 330 78 HOH HOH . F 5 HOH A 31 331 124 HOH HOH . F 5 HOH A 32 332 12 HOH HOH . F 5 HOH A 33 333 45 HOH HOH . F 5 HOH A 34 334 20 HOH HOH . F 5 HOH A 35 335 72 HOH HOH . F 5 HOH A 36 336 44 HOH HOH . F 5 HOH A 37 337 142 HOH HOH . F 5 HOH A 38 338 4 HOH HOH . F 5 HOH A 39 339 123 HOH HOH . F 5 HOH A 40 340 74 HOH HOH . F 5 HOH A 41 341 14 HOH HOH . F 5 HOH A 42 342 192 HOH HOH . F 5 HOH A 43 343 174 HOH HOH . F 5 HOH A 44 344 157 HOH HOH . F 5 HOH A 45 345 84 HOH HOH . F 5 HOH A 46 346 208 HOH HOH . F 5 HOH A 47 347 19 HOH HOH . F 5 HOH A 48 348 32 HOH HOH . F 5 HOH A 49 349 267 HOH HOH . F 5 HOH A 50 350 182 HOH HOH . F 5 HOH A 51 351 24 HOH HOH . F 5 HOH A 52 352 195 HOH HOH . F 5 HOH A 53 353 16 HOH HOH . F 5 HOH A 54 354 75 HOH HOH . F 5 HOH A 55 355 112 HOH HOH . F 5 HOH A 56 356 43 HOH HOH . F 5 HOH A 57 357 10 HOH HOH . F 5 HOH A 58 358 66 HOH HOH . F 5 HOH A 59 359 154 HOH HOH . F 5 HOH A 60 360 153 HOH HOH . F 5 HOH A 61 361 125 HOH HOH . F 5 HOH A 62 362 178 HOH HOH . F 5 HOH A 63 363 57 HOH HOH . F 5 HOH A 64 364 36 HOH HOH . F 5 HOH A 65 365 71 HOH HOH . F 5 HOH A 66 366 108 HOH HOH . F 5 HOH A 67 367 158 HOH HOH . F 5 HOH A 68 368 140 HOH HOH . F 5 HOH A 69 369 92 HOH HOH . F 5 HOH A 70 370 255 HOH HOH . F 5 HOH A 71 371 116 HOH HOH . F 5 HOH A 72 372 117 HOH HOH . F 5 HOH A 73 373 200 HOH HOH . F 5 HOH A 74 374 274 HOH HOH . F 5 HOH A 75 375 1 HOH HOH . F 5 HOH A 76 376 150 HOH HOH . F 5 HOH A 77 377 134 HOH HOH . F 5 HOH A 78 378 128 HOH HOH . F 5 HOH A 79 379 203 HOH HOH . F 5 HOH A 80 380 22 HOH HOH . F 5 HOH A 81 381 38 HOH HOH . F 5 HOH A 82 382 81 HOH HOH . F 5 HOH A 83 383 225 HOH HOH . F 5 HOH A 84 384 52 HOH HOH . F 5 HOH A 85 385 51 HOH HOH . F 5 HOH A 86 386 183 HOH HOH . F 5 HOH A 87 387 48 HOH HOH . F 5 HOH A 88 388 53 HOH HOH . F 5 HOH A 89 389 68 HOH HOH . F 5 HOH A 90 390 214 HOH HOH . F 5 HOH A 91 391 35 HOH HOH . F 5 HOH A 92 392 131 HOH HOH . F 5 HOH A 93 393 259 HOH HOH . F 5 HOH A 94 394 169 HOH HOH . F 5 HOH A 95 395 47 HOH HOH . F 5 HOH A 96 396 173 HOH HOH . F 5 HOH A 97 397 70 HOH HOH . F 5 HOH A 98 398 268 HOH HOH . F 5 HOH A 99 399 190 HOH HOH . F 5 HOH A 100 400 177 HOH HOH . F 5 HOH A 101 401 85 HOH HOH . F 5 HOH A 102 402 235 HOH HOH . F 5 HOH A 103 403 222 HOH HOH . F 5 HOH A 104 404 179 HOH HOH . F 5 HOH A 105 405 266 HOH HOH . F 5 HOH A 106 406 172 HOH HOH . F 5 HOH A 107 407 218 HOH HOH . F 5 HOH A 108 408 253 HOH HOH . F 5 HOH A 109 409 69 HOH HOH . F 5 HOH A 110 410 241 HOH HOH . F 5 HOH A 111 411 152 HOH HOH . F 5 HOH A 112 412 161 HOH HOH . F 5 HOH A 113 413 115 HOH HOH . F 5 HOH A 114 414 196 HOH HOH . F 5 HOH A 115 415 217 HOH HOH . F 5 HOH A 116 416 194 HOH HOH . F 5 HOH A 117 417 2 HOH HOH . F 5 HOH A 118 418 130 HOH HOH . F 5 HOH A 119 419 54 HOH HOH . F 5 HOH A 120 420 135 HOH HOH . F 5 HOH A 121 421 114 HOH HOH . F 5 HOH A 122 422 202 HOH HOH . F 5 HOH A 123 423 244 HOH HOH . F 5 HOH A 124 424 258 HOH HOH . F 5 HOH A 125 425 216 HOH HOH . F 5 HOH A 126 426 201 HOH HOH . F 5 HOH A 127 427 240 HOH HOH . F 5 HOH A 128 428 151 HOH HOH . F 5 HOH A 129 429 209 HOH HOH . F 5 HOH A 130 430 129 HOH HOH . F 5 HOH A 131 431 136 HOH HOH . F 5 HOH A 132 432 163 HOH HOH . F 5 HOH A 133 433 256 HOH HOH . F 5 HOH A 134 434 252 HOH HOH . F 5 HOH A 135 435 223 HOH HOH . F 5 HOH A 136 436 88 HOH HOH . F 5 HOH A 137 437 213 HOH HOH . F 5 HOH A 138 438 191 HOH HOH . F 5 HOH A 139 439 278 HOH HOH . F 5 HOH A 140 440 271 HOH HOH . F 5 HOH A 141 441 77 HOH HOH . F 5 HOH A 142 442 230 HOH HOH . F 5 HOH A 143 443 120 HOH HOH . F 5 HOH A 144 444 126 HOH HOH . F 5 HOH A 145 445 184 HOH HOH . F 5 HOH A 146 446 91 HOH HOH . F 5 HOH A 147 447 229 HOH HOH . F 5 HOH A 148 448 110 HOH HOH . F 5 HOH A 149 449 212 HOH HOH . F 5 HOH A 150 450 109 HOH HOH . F 5 HOH A 151 451 233 HOH HOH . F 5 HOH A 152 452 220 HOH HOH . G 5 HOH B 1 301 160 HOH HOH . G 5 HOH B 2 302 49 HOH HOH . G 5 HOH B 3 303 122 HOH HOH . G 5 HOH B 4 304 5 HOH HOH . G 5 HOH B 5 305 180 HOH HOH . G 5 HOH B 6 306 232 HOH HOH . G 5 HOH B 7 307 13 HOH HOH . G 5 HOH B 8 308 148 HOH HOH . G 5 HOH B 9 309 245 HOH HOH . G 5 HOH B 10 310 86 HOH HOH . G 5 HOH B 11 311 243 HOH HOH . G 5 HOH B 12 312 188 HOH HOH . G 5 HOH B 13 313 15 HOH HOH . G 5 HOH B 14 314 33 HOH HOH . G 5 HOH B 15 315 236 HOH HOH . G 5 HOH B 16 316 83 HOH HOH . G 5 HOH B 17 317 175 HOH HOH . G 5 HOH B 18 318 262 HOH HOH . G 5 HOH B 19 319 62 HOH HOH . G 5 HOH B 20 320 273 HOH HOH . G 5 HOH B 21 321 166 HOH HOH . G 5 HOH B 22 322 23 HOH HOH . G 5 HOH B 23 323 39 HOH HOH . G 5 HOH B 24 324 28 HOH HOH . G 5 HOH B 25 325 165 HOH HOH . G 5 HOH B 26 326 7 HOH HOH . G 5 HOH B 27 327 228 HOH HOH . G 5 HOH B 28 328 226 HOH HOH . G 5 HOH B 29 329 37 HOH HOH . G 5 HOH B 30 330 8 HOH HOH . G 5 HOH B 31 331 89 HOH HOH . G 5 HOH B 32 332 277 HOH HOH . G 5 HOH B 33 333 263 HOH HOH . G 5 HOH B 34 334 147 HOH HOH . G 5 HOH B 35 335 146 HOH HOH . G 5 HOH B 36 336 79 HOH HOH . G 5 HOH B 37 337 9 HOH HOH . G 5 HOH B 38 338 60 HOH HOH . G 5 HOH B 39 339 187 HOH HOH . G 5 HOH B 40 340 17 HOH HOH . G 5 HOH B 41 341 204 HOH HOH . G 5 HOH B 42 342 206 HOH HOH . G 5 HOH B 43 343 118 HOH HOH . G 5 HOH B 44 344 46 HOH HOH . G 5 HOH B 45 345 25 HOH HOH . G 5 HOH B 46 346 176 HOH HOH . G 5 HOH B 47 347 155 HOH HOH . G 5 HOH B 48 348 121 HOH HOH . G 5 HOH B 49 349 65 HOH HOH . G 5 HOH B 50 350 55 HOH HOH . G 5 HOH B 51 351 162 HOH HOH . G 5 HOH B 52 352 231 HOH HOH . G 5 HOH B 53 353 76 HOH HOH . G 5 HOH B 54 354 261 HOH HOH . G 5 HOH B 55 355 138 HOH HOH . G 5 HOH B 56 356 127 HOH HOH . G 5 HOH B 57 357 40 HOH HOH . G 5 HOH B 58 358 96 HOH HOH . G 5 HOH B 59 359 149 HOH HOH . G 5 HOH B 60 360 93 HOH HOH . G 5 HOH B 61 361 159 HOH HOH . G 5 HOH B 62 362 105 HOH HOH . G 5 HOH B 63 363 29 HOH HOH . G 5 HOH B 64 364 181 HOH HOH . G 5 HOH B 65 365 133 HOH HOH . G 5 HOH B 66 366 247 HOH HOH . G 5 HOH B 67 367 26 HOH HOH . G 5 HOH B 68 368 111 HOH HOH . G 5 HOH B 69 369 101 HOH HOH . G 5 HOH B 70 370 64 HOH HOH . G 5 HOH B 71 371 248 HOH HOH . G 5 HOH B 72 372 168 HOH HOH . G 5 HOH B 73 373 6 HOH HOH . G 5 HOH B 74 374 144 HOH HOH . G 5 HOH B 75 375 63 HOH HOH . G 5 HOH B 76 376 238 HOH HOH . G 5 HOH B 77 377 99 HOH HOH . G 5 HOH B 78 378 185 HOH HOH . G 5 HOH B 79 379 189 HOH HOH . G 5 HOH B 80 380 207 HOH HOH . G 5 HOH B 81 381 41 HOH HOH . G 5 HOH B 82 382 97 HOH HOH . G 5 HOH B 83 383 198 HOH HOH . G 5 HOH B 84 384 164 HOH HOH . G 5 HOH B 85 385 67 HOH HOH . G 5 HOH B 86 386 279 HOH HOH . G 5 HOH B 87 387 30 HOH HOH . G 5 HOH B 88 388 251 HOH HOH . G 5 HOH B 89 389 90 HOH HOH . G 5 HOH B 90 390 205 HOH HOH . G 5 HOH B 91 391 145 HOH HOH . G 5 HOH B 92 392 102 HOH HOH . G 5 HOH B 93 393 257 HOH HOH . G 5 HOH B 94 394 82 HOH HOH . G 5 HOH B 95 395 170 HOH HOH . G 5 HOH B 96 396 106 HOH HOH . G 5 HOH B 97 397 132 HOH HOH . G 5 HOH B 98 398 211 HOH HOH . G 5 HOH B 99 399 199 HOH HOH . G 5 HOH B 100 400 246 HOH HOH . G 5 HOH B 101 401 119 HOH HOH . G 5 HOH B 102 402 239 HOH HOH . G 5 HOH B 103 403 272 HOH HOH . G 5 HOH B 104 404 269 HOH HOH . G 5 HOH B 105 405 143 HOH HOH . G 5 HOH B 106 406 104 HOH HOH . G 5 HOH B 107 407 139 HOH HOH . G 5 HOH B 108 408 167 HOH HOH . G 5 HOH B 109 409 73 HOH HOH . G 5 HOH B 110 410 137 HOH HOH . G 5 HOH B 111 411 80 HOH HOH . G 5 HOH B 112 412 141 HOH HOH . G 5 HOH B 113 413 193 HOH HOH . G 5 HOH B 114 414 242 HOH HOH . G 5 HOH B 115 415 197 HOH HOH . G 5 HOH B 116 416 27 HOH HOH . G 5 HOH B 117 417 234 HOH HOH . G 5 HOH B 118 418 260 HOH HOH . G 5 HOH B 119 419 219 HOH HOH . G 5 HOH B 120 420 156 HOH HOH . G 5 HOH B 121 421 221 HOH HOH . G 5 HOH B 122 422 107 HOH HOH . G 5 HOH B 123 423 227 HOH HOH . G 5 HOH B 124 424 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -24.791 7.053 -34.972 1 22.6 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 3 -23.887 7.681 -35.852 1 27.23 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 3 -24.511 5.554 -34.937 1 18.49 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 3 -23.185 5.302 -34.51 1 12.36 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 3 -25.519 4.858 -34.023 1 20.86 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 3 -26.823 5.073 -34.521 1 27.45 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #