data_5KMD
#
_model_server_result.job_id            bpWtJbSvvHWWWuk6A5W5wA 
_model_server_result.datetime_utc      '2024-11-16 10:50:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kmd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":1304}' 
#
_entry.id    5KMD 
#
_exptl.entry_id    5KMD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              408.876 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            amlodipine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KMD 
_cell.length_a            125.64 
_cell.length_b            125.53 
_cell.length_c            191.7 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KMD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             R 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C20 H25 Cl N2 O5' 
_chem_comp.formula_weight    408.876 
_chem_comp.id                6UB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              amlodipine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '~{O}3-ethyl ~{O}5-methyl (4~{S})-2-(2-azanylethoxymethyl)-4-(2-chlorophenyl)-6-methyl-1,4-dihydropyridine-3,5-dicarboxylate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAH CAJ 6UB doub 1 n y 
CAH CAI 6UB sing 2 n y 
CAJ CAZ 6UB sing 3 n y 
CAI CAK 6UB doub 4 n y 
CLAG CAZ 6UB sing 5 n n 
CAZ CBA 6UB doub 6 n y 
CAK CBA 6UB sing 7 n y 
CBA CBB 6UB sing 8 n n 
OAE CAU 6UB doub 9 n n 
CBB CAX 6UB sing 10 n n 
CBB CAY 6UB sing 11 n n 
CAX CAU 6UB sing 12 n n 
CAX CAT 6UB doub 13 n n 
CAU OAQ 6UB sing 14 n n 
CAY CAV 6UB sing 15 n n 
CAY CAW 6UB doub 16 n n 
CAL OAS 6UB sing 17 n n 
CAL CAA 6UB sing 18 n n 
CAV OAF 6UB doub 19 n n 
CAV OAS 6UB sing 20 n n 
NAP CAT 6UB sing 21 n n 
NAP CAW 6UB sing 22 n n 
CAT CAC 6UB sing 23 n n 
CAW C24 6UB sing 24 n n 
OAQ CAB 6UB sing 25 n n 
C24 O25 6UB sing 26 n n 
O25 C26 6UB sing 27 n n 
C26 C27 6UB sing 28 n n 
C27 N28 6UB sing 29 n n 
CAA H1 6UB sing 30 n n 
CAA H2 6UB sing 31 n n 
CAA H3 6UB sing 32 n n 
CAL H4 6UB sing 33 n n 
CAL H5 6UB sing 34 n n 
NAP H6 6UB sing 35 n n 
CBB H9 6UB sing 36 n n 
CAK H10 6UB sing 37 n n 
CAI H11 6UB sing 38 n n 
CAH H12 6UB sing 39 n n 
CAJ H13 6UB sing 40 n n 
CAB H14 6UB sing 41 n n 
CAB H15 6UB sing 42 n n 
CAB H16 6UB sing 43 n n 
CAC H17 6UB sing 44 n n 
CAC H18 6UB sing 45 n n 
CAC H19 6UB sing 46 n n 
C24 H20 6UB sing 47 n n 
C24 H21 6UB sing 48 n n 
C26 H22 6UB sing 49 n n 
C26 H23 6UB sing 50 n n 
C27 H24 6UB sing 51 n n 
C27 H25 6UB sing 52 n n 
N28 H26 6UB sing 53 n n 
N28 H27 6UB sing 54 n n 
#
_atom_sites.entry_id                     5KMD 
_atom_sites.fract_transf_matrix[1][1]    0.007959 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005216 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MC3 A 1 1301 1304 MC3 PX4 . 
F 2 MC3 A 1 1302 1307 MC3 PX4 . 
G 2 MC3 A 1 1303 1308 MC3 PX5 . 
H 2 MC3 A 1 1304 1310 MC3 PX5 . 
I 2 MC3 A 1 1305 1305 MC3 PX6 . 
J 2 MC3 A 1 1306 1306 MC3 PX7 . 
K 2 MC3 A 1 1307 1307 MC3 PX7 . 
L 2 MC3 B 1 1301 1306 MC3 PX4 . 
M 2 MC3 B 1 1302 1309 MC3 PX5 . 
N 2 MC3 B 1 1303 1304 MC3 PX6 . 
O 3 CA C 1 1301 2 CA CA . 
P 2 MC3 C 1 1302 1303 MC3 PX6 . 
Q 2 MC3 C 1 1303 1305 MC3 PX7 . 
R 4 6UB C 1 1304 5 6UB AMX . 
S 3 CA D 1 1301 4 CA CA . 
T 2 MC3 D 1 1302 1305 MC3 PX4 . 
U 2 MC3 D 1 1303 1302 MC3 PX6 . 
V 5 HOH C 1 1401 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 6UB . . . R 4 38.936 41.631 15.867 1 78.66 ? CAA 6UB 1304 C 1 
HETATM 2 C CAL 6UB . . . R 4 38.095 40.586 15.136 1 77.5 ? CAL 6UB 1304 C 1 
HETATM 3 O OAS 6UB . . . R 4 38.613 39.275 15.365 1 84.55 ? OAS 6UB 1304 C 1 
HETATM 4 C CAV 6UB . . . R 4 37.711 38.184 15.195 1 90.04 ? CAV 6UB 1304 C 1 
HETATM 5 O OAF 6UB . . . R 4 36.517 38.339 15.256 1 87.35 ? OAF 6UB 1304 C 1 
HETATM 6 C CAY 6UB . . . R 4 38.305 36.767 14.942 1 107.44 ? CAY 6UB 1304 C 1 
HETATM 7 C CAW 6UB . . . R 4 38.004 35.798 15.87 1 106.01 ? CAW 6UB 1304 C 1 
HETATM 8 N NAP 6UB . . . R 4 38.843 34.535 15.734 1 115.33 ? NAP 6UB 1304 C 1 
HETATM 9 C CAT 6UB . . . R 4 40.233 35.119 15.786 1 119.11 ? CAT 6UB 1304 C 1 
HETATM 10 C CAX 6UB . . . R 4 40.641 35.858 14.703 1 90.65 ? CAX 6UB 1304 C 1 
HETATM 11 C CBB 6UB . . . R 4 39.412 36.344 13.901 1 106 ? CBB 6UB 1304 C 1 
HETATM 12 C CBA 6UB . . . R 4 39.47 37.07 12.409 1 94.42 ? CBA 6UB 1304 C 1 
HETATM 13 C CAK 6UB . . . R 4 38.512 38.048 12.113 1 87.99 ? CAK 6UB 1304 C 1 
HETATM 14 C CAI 6UB . . . R 4 38.44 38.7 10.887 1 78.74 ? CAI 6UB 1304 C 1 
HETATM 15 C CAH 6UB . . . R 4 39.311 38.394 9.846 1 66.02 ? CAH 6UB 1304 C 1 
HETATM 16 C CAJ 6UB . . . R 4 40.247 37.419 10.063 1 61.57 ? CAJ 6UB 1304 C 1 
HETATM 17 C CAZ 6UB . . . R 4 40.329 36.766 11.272 1 83.76 ? CAZ 6UB 1304 C 1 
HETATM 18 CL CLAG 6UB . . . R 4 41.643 35.556 11.203 1 105.13 ? CLAG 6UB 1304 C 1 
HETATM 19 C CAU 6UB . . . R 4 42.158 36.533 14.71 1 72.31 ? CAU 6UB 1304 C 1 
HETATM 20 O OAE 6UB . . . R 4 42.528 36.942 13.699 1 80.52 ? OAE 6UB 1304 C 1 
HETATM 21 O OAQ 6UB . . . R 4 43.01 36.681 15.874 1 57.16 ? OAQ 6UB 1304 C 1 
HETATM 22 C CAB 6UB . . . R 4 44.162 35.845 16.052 1 45.53 ? CAB 6UB 1304 C 1 
HETATM 23 C CAC 6UB . . . R 4 41.217 34.392 16.765 1 121.53 ? CAC 6UB 1304 C 1 
HETATM 24 C C24 6UB . . . R 4 37.259 35.911 17.095 1 108.68 ? C24 6UB 1304 C 1 
HETATM 25 O O25 6UB . . . R 4 37.7 34.731 17.826 1 100.56 ? O25 6UB 1304 C 1 
HETATM 26 C C26 6UB . . . R 4 38.506 35.002 18.97 1 103.24 ? C26 6UB 1304 C 1 
HETATM 27 C C27 6UB . . . R 4 39.141 33.647 19.467 1 93.13 ? C27 6UB 1304 C 1 
HETATM 28 N N28 6UB . . . R 4 40.581 33.802 19.69 1 86.39 ? N28 6UB 1304 C 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#