data_5KMH # _model_server_result.job_id 4OWe-4E562ghg1bmCTX1gQ _model_server_result.datetime_utc '2024-11-25 23:53:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1301}' # _entry.id 5KMH # _exptl.entry_id 5KMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 647.883 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KMH _cell.length_a 125.535 _cell.length_b 125.525 _cell.length_c 191.96 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 K N N ? 4 M N N ? 4 Q N N # _chem_comp.formula 'C35 H68 O8 P -1' _chem_comp.formula_weight 647.883 _chem_comp.id PX6 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 PX6 sing 443 n n O2 P1 PX6 doub 444 n n P1 O3 PX6 sing 445 n n P1 O4 PX6 sing 446 n n O3 H1 PX6 sing 447 n n O4 C1 PX6 sing 448 n n C1 C2 PX6 sing 449 n n C1 H2 PX6 sing 450 n n C1 H3 PX6 sing 451 n n C2 C3 PX6 sing 452 n n C2 O7 PX6 sing 453 n n C2 H4 PX6 sing 454 n n C3 O5 PX6 sing 455 n n C3 H5 PX6 sing 456 n n C3 H6 PX6 sing 457 n n O5 C4 PX6 sing 458 n n C4 O6 PX6 doub 459 n n C4 C5 PX6 sing 460 n n C5 C6 PX6 sing 461 n n C5 H7 PX6 sing 462 n n C5 H8 PX6 sing 463 n n C6 C7 PX6 sing 464 n n C6 H9 PX6 sing 465 n n C6 H10 PX6 sing 466 n n C7 C8 PX6 sing 467 n n C7 H11 PX6 sing 468 n n C7 H12 PX6 sing 469 n n C8 C9 PX6 sing 470 n n C8 H13 PX6 sing 471 n n C8 H14 PX6 sing 472 n n C9 C10 PX6 sing 473 n n C9 H15 PX6 sing 474 n n C9 H16 PX6 sing 475 n n C10 C11 PX6 sing 476 n n C10 H17 PX6 sing 477 n n C10 H18 PX6 sing 478 n n C11 C12 PX6 sing 479 n n C11 H19 PX6 sing 480 n n C11 H20 PX6 sing 481 n n C12 C13 PX6 sing 482 n n C12 H21 PX6 sing 483 n n C12 H22 PX6 sing 484 n n C13 C14 PX6 sing 485 n n C13 H23 PX6 sing 486 n n C13 H24 PX6 sing 487 n n C14 C15 PX6 sing 488 n n C14 H25 PX6 sing 489 n n C14 H26 PX6 sing 490 n n C15 C16 PX6 sing 491 n n C15 H27 PX6 sing 492 n n C15 H28 PX6 sing 493 n n C16 C17 PX6 sing 494 n n C16 H29 PX6 sing 495 n n C16 H30 PX6 sing 496 n n C17 C18 PX6 sing 497 n n C17 H31 PX6 sing 498 n n C17 H32 PX6 sing 499 n n C18 C19 PX6 sing 500 n n C18 H33 PX6 sing 501 n n C18 H34 PX6 sing 502 n n C19 H35 PX6 sing 503 n n C19 H36 PX6 sing 504 n n C19 H37 PX6 sing 505 n n O7 C20 PX6 sing 506 n n C20 O8 PX6 doub 507 n n C20 C21 PX6 sing 508 n n C21 C22 PX6 sing 509 n n C21 H38 PX6 sing 510 n n C21 H39 PX6 sing 511 n n C22 C23 PX6 sing 512 n n C22 H40 PX6 sing 513 n n C22 H41 PX6 sing 514 n n C23 C24 PX6 sing 515 n n C23 H42 PX6 sing 516 n n C23 H43 PX6 sing 517 n n C24 C25 PX6 sing 518 n n C24 H44 PX6 sing 519 n n C24 H45 PX6 sing 520 n n C25 C26 PX6 sing 521 n n C25 H46 PX6 sing 522 n n C25 H47 PX6 sing 523 n n C26 C27 PX6 sing 524 n n C26 H48 PX6 sing 525 n n C26 H49 PX6 sing 526 n n C27 C28 PX6 sing 527 n n C27 H50 PX6 sing 528 n n C27 H51 PX6 sing 529 n n C28 C29 PX6 sing 530 n n C28 H52 PX6 sing 531 n n C28 H53 PX6 sing 532 n n C29 C30 PX6 sing 533 n n C29 H54 PX6 sing 534 n n C29 H55 PX6 sing 535 n n C30 C31 PX6 sing 536 n n C30 H56 PX6 sing 537 n n C30 H57 PX6 sing 538 n n C31 C32 PX6 sing 539 n n C31 H58 PX6 sing 540 n n C31 H59 PX6 sing 541 n n C32 C33 PX6 sing 542 n n C32 H60 PX6 sing 543 n n C32 H61 PX6 sing 544 n n C33 C34 PX6 sing 545 n n C33 H62 PX6 sing 546 n n C33 H63 PX6 sing 547 n n C34 C35 PX6 sing 548 n n C34 H64 PX6 sing 549 n n C34 H65 PX6 sing 550 n n C35 H66 PX6 sing 551 n n C35 H67 PX6 sing 552 n n C35 H68 PX6 sing 553 n n # _atom_sites.entry_id 5KMH _atom_sites.fract_transf_matrix[1][1] 0.007966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 1301 2 CA CA . F 2 CA A 1 1302 3 CA CA . G 3 MC3 A 1 1303 1308 MC3 PX5 . H 3 MC3 A 1 1304 1310 MC3 PX5 . I 4 PX6 A 1 1305 1305 PX6 PX6 . J 3 MC3 A 1 1306 1307 MC3 PX7 . K 4 PX6 B 1 1301 1304 PX6 PX6 . L 3 MC3 B 1 1302 1306 MC3 PX7 . M 4 PX6 C 1 1301 1302 PX6 PX6 . N 5 6U8 C 1 1302 1 6U8 VER . O 2 CA D 1 1301 1 CA CA . P 3 MC3 D 1 1302 1309 MC3 PX5 . Q 4 PX6 D 1 1303 1303 PX6 PX6 . R 3 MC3 D 1 1304 1305 MC3 PX7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PX6 . . . M 4 4.278 5.623 7.905 1 114.35 ? O1 PX6 1301 C 1 HETATM 2 O O2 PX6 . . . M 4 5.664 4.653 6.091 1 114.68 ? O2 PX6 1301 C 1 HETATM 3 P P1 PX6 . . . M 4 5.502 4.778 7.602 1 121.55 ? P1 PX6 1301 C 1 HETATM 4 O O3 PX6 . . . M 4 5.203 3.403 8.144 1 125.27 ? O3 PX6 1301 C 1 HETATM 5 O O4 PX6 . . . M 4 6.885 5.366 8.375 1 93.1 ? O4 PX6 1301 C 1 HETATM 6 C C1 PX6 . . . M 4 6.962 6.672 8.942 1 78.2 ? C1 PX6 1301 C 1 HETATM 7 C C2 PX6 . . . M 4 6.632 6.869 10.45 1 63.06 ? C2 PX6 1301 C 1 HETATM 8 C C3 PX6 . . . M 4 6.265 8.365 10.742 1 66.71 ? C3 PX6 1301 C 1 HETATM 9 O O5 PX6 . . . M 4 4.944 8.783 11.164 1 58.9 ? O5 PX6 1301 C 1 HETATM 10 O O7 PX6 . . . M 4 5.654 5.994 10.921 1 77.15 ? O7 PX6 1301 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #