data_5KMH
#
_model_server_result.job_id            mvrljD3N7n-bEU73u4VzHA 
_model_server_result.datetime_utc      '2024-11-25 23:55:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kmh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1302}' 
#
_entry.id    5KMH 
#
_exptl.entry_id    5KMH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              473.446 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R})-2-(2-bromophenyl)-5-[2-(3,4-dimethoxyphenyl)ethyl-methyl-amino]-2-propan-2-yl-pentanenitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KMH 
_cell.length_a            125.535 
_cell.length_b            125.525 
_cell.length_c            191.96 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KMH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H33 Br N2 O2' 
_chem_comp.formula_weight    473.446 
_chem_comp.id                6U8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R})-2-(2-bromophenyl)-5-[2-(3,4-dimethoxyphenyl)ethyl-methyl-amino]-2-propan-2-yl-pentanenitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C14 6U8 sing 1 n n 
C13 N11 6U8 sing 2 n n 
C12 N11 6U8 sing 3 n n 
C14 C15 6U8 sing 4 n n 
N11 C10 6U8 sing 5 n n 
C10 C09 6U8 sing 6 n n 
C32 C33 6U8 doub 7 n y 
C32 C08 6U8 sing 8 n y 
C33 C03 6U8 sing 9 n y 
C15 C16 6U8 sing 10 n n 
C09 C08 6U8 sing 11 n n 
C08 C07 6U8 doub 12 n y 
C01 O02 6U8 sing 13 n n 
C03 O02 6U8 sing 14 n n 
C03 C04 6U8 doub 15 n y 
BR32 C31 6U8 sing 16 n n 
C30 C31 6U8 doub 17 n y 
C30 C27 6U8 sing 18 n y 
C31 C22 6U8 sing 19 n y 
N18 C17 6U8 trip 20 n n 
C07 C04 6U8 sing 21 n y 
C27 C24 6U8 doub 22 n y 
C04 O05 6U8 sing 23 n n 
C22 C16 6U8 sing 24 n n 
C22 C23 6U8 doub 25 n y 
C24 C23 6U8 sing 26 n y 
C16 C17 6U8 sing 27 n n 
C16 C19 6U8 sing 28 n n 
O05 C06 6U8 sing 29 n n 
C20 C19 6U8 sing 30 n n 
C19 C21 6U8 sing 31 n n 
C01 H1 6U8 sing 32 n n 
C01 H2 6U8 sing 33 n n 
C01 H3 6U8 sing 34 n n 
C06 H4 6U8 sing 35 n n 
C06 H5 6U8 sing 36 n n 
C06 H6 6U8 sing 37 n n 
C07 H7 6U8 sing 38 n n 
C09 H8 6U8 sing 39 n n 
C09 H9 6U8 sing 40 n n 
C10 H10 6U8 sing 41 n n 
C10 H11 6U8 sing 42 n n 
C12 H13 6U8 sing 43 n n 
C12 H14 6U8 sing 44 n n 
C12 H15 6U8 sing 45 n n 
C13 H16 6U8 sing 46 n n 
C13 H17 6U8 sing 47 n n 
C14 H18 6U8 sing 48 n n 
C14 H19 6U8 sing 49 n n 
C15 H20 6U8 sing 50 n n 
C15 H21 6U8 sing 51 n n 
C19 H24 6U8 sing 52 n n 
C20 H25 6U8 sing 53 n n 
C20 H26 6U8 sing 54 n n 
C20 H27 6U8 sing 55 n n 
C21 H28 6U8 sing 56 n n 
C21 H29 6U8 sing 57 n n 
C21 H30 6U8 sing 58 n n 
C23 H31 6U8 sing 59 n n 
C24 H32 6U8 sing 60 n n 
C27 H33 6U8 sing 61 n n 
C30 H34 6U8 sing 62 n n 
C32 H35 6U8 sing 63 n n 
C33 H36 6U8 sing 64 n n 
#
_atom_sites.entry_id                     5KMH 
_atom_sites.fract_transf_matrix[1][1]    0.007966 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007967 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CA A 1 1301 2 CA CA . 
F 2 CA A 1 1302 3 CA CA . 
G 3 MC3 A 1 1303 1308 MC3 PX5 . 
H 3 MC3 A 1 1304 1310 MC3 PX5 . 
I 4 PX6 A 1 1305 1305 PX6 PX6 . 
J 3 MC3 A 1 1306 1307 MC3 PX7 . 
K 4 PX6 B 1 1301 1304 PX6 PX6 . 
L 3 MC3 B 1 1302 1306 MC3 PX7 . 
M 4 PX6 C 1 1301 1302 PX6 PX6 . 
N 5 6U8 C 1 1302 1 6U8 VER . 
O 2 CA D 1 1301 1 CA CA . 
P 3 MC3 D 1 1302 1309 MC3 PX5 . 
Q 4 PX6 D 1 1303 1303 PX6 PX6 . 
R 3 MC3 D 1 1304 1305 MC3 PX7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 6U8 . . . N 5 -3.167 23.266 24.275 1 52.14 ? C01 6U8 1302 C 1 
HETATM 2 O O02 6U8 . . . N 5 -4.336 24.104 24.339 1 50.59 ? O02 6U8 1302 C 1 
HETATM 3 C C03 6U8 . . . N 5 -4.22 25.531 24.318 1 84.37 ? C03 6U8 1302 C 1 
HETATM 4 C C04 6U8 . . . N 5 -3.178 26.248 24.927 1 91.42 ? C04 6U8 1302 C 1 
HETATM 5 O O05 6U8 . . . N 5 -2.118 25.661 25.634 1 77.91 ? O05 6U8 1302 C 1 
HETATM 6 C C06 6U8 . . . N 5 -1.344 26.621 26.329 1 74.44 ? C06 6U8 1302 C 1 
HETATM 7 C C07 6U8 . . . N 5 -3.173 27.656 24.863 1 102.58 ? C07 6U8 1302 C 1 
HETATM 8 C C08 6U8 . . . N 5 -4.133 28.413 24.209 1 82.73 ? C08 6U8 1302 C 1 
HETATM 9 C C09 6U8 . . . N 5 -3.956 29.944 24.157 1 82.74 ? C09 6U8 1302 C 1 
HETATM 10 C C10 6U8 . . . N 5 -2.774 30.259 23.164 1 72.78 ? C10 6U8 1302 C 1 
HETATM 11 N N11 6U8 . . . N 5 -2.333 31.671 23.044 1 67.17 ? N11 6U8 1302 C 1 
HETATM 12 C C12 6U8 . . . N 5 -3.423 32.496 22.479 1 78.58 ? C12 6U8 1302 C 1 
HETATM 13 C C13 6U8 . . . N 5 -1.058 31.797 22.287 1 66.38 ? C13 6U8 1302 C 1 
HETATM 14 C C14 6U8 . . . N 5 -0.1 32.862 22.888 1 85.62 ? C14 6U8 1302 C 1 
HETATM 15 C C15 6U8 . . . N 5 -0.789 33.923 23.792 1 118.04 ? C15 6U8 1302 C 1 
HETATM 16 C C16 6U8 . . . N 5 -0.254 34.409 25.175 1 128.94 ? C16 6U8 1302 C 1 
HETATM 17 C C17 6U8 . . . N 5 -1.146 35.607 25.578 1 122.68 ? C17 6U8 1302 C 1 
HETATM 18 N N18 6U8 . . . N 5 -1.845 36.186 24.833 1 116.46 ? N18 6U8 1302 C 1 
HETATM 19 C C19 6U8 . . . N 5 -0.449 33.402 26.364 1 116.84 ? C19 6U8 1302 C 1 
HETATM 20 C C20 6U8 . . . N 5 -0.495 31.883 26.119 1 110.32 ? C20 6U8 1302 C 1 
HETATM 21 C C21 6U8 . . . N 5 -1.519 33.801 27.401 1 123.34 ? C21 6U8 1302 C 1 
HETATM 22 C C22 6U8 . . . N 5 1.251 34.793 25.041 1 121.2 ? C22 6U8 1302 C 1 
HETATM 23 C C23 6U8 . . . N 5 2.151 33.738 25.243 1 86.28 ? C23 6U8 1302 C 1 
HETATM 24 C C24 6U8 . . . N 5 3.518 33.919 25.168 1 85.42 ? C24 6U8 1302 C 1 
HETATM 25 C C27 6U8 . . . N 5 4.046 35.169 24.89 1 103.47 ? C27 6U8 1302 C 1 
HETATM 26 C C30 6U8 . . . N 5 3.176 36.245 24.684 1 126.51 ? C30 6U8 1302 C 1 
HETATM 27 C C31 6U8 . . . N 5 1.785 36.089 24.745 1 159.3 ? C31 6U8 1302 C 1 
HETATM 28 BR BR32 6U8 . . . N 5 0.778 37.748 24.42 1 259.57 ? BR32 6U8 1302 C 1 
HETATM 29 C C32 6U8 . . . N 5 -5.159 27.731 23.586 1 75.99 ? C32 6U8 1302 C 1 
HETATM 30 C C33 6U8 . . . N 5 -5.197 26.308 23.656 1 91.07 ? C33 6U8 1302 C 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#