data_5KMH # _model_server_result.job_id HpyfUhRixYh6DWCpAkbi4w _model_server_result.datetime_utc '2024-11-13 02:32:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1304}' # _entry.id 5KMH # _exptl.entry_id 5KMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 677.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KMH _cell.length_a 125.535 _cell.length_b 125.525 _cell.length_c 191.96 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 J N N ? 3 L N N ? 3 P N N ? 3 R N N # _chem_comp.formula 'C36 H72 N O8 P' _chem_comp.formula_weight 677.933 _chem_comp.id MC3 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MC3 sing 267 n n C1 O3P MC3 sing 268 n n C1 H11 MC3 sing 269 n n C1 H12 MC3 sing 270 n n C2 C3 MC3 sing 271 n n C2 O2 MC3 sing 272 n n C2 H2 MC3 sing 273 n n C3 O3 MC3 sing 274 n n C3 H31 MC3 sing 275 n n C3 H32 MC3 sing 276 n n C4 C5 MC3 sing 277 n n C4 O4P MC3 sing 278 n n C4 H41 MC3 sing 279 n n C4 H42 MC3 sing 280 n n C5 N MC3 sing 281 n n C5 H51 MC3 sing 282 n n C5 H52 MC3 sing 283 n n C6 N MC3 sing 284 n n C6 H61 MC3 sing 285 n n C6 H62 MC3 sing 286 n n C6 H63 MC3 sing 287 n n C7 N MC3 sing 288 n n C7 H71 MC3 sing 289 n n C7 H72 MC3 sing 290 n n C7 H73 MC3 sing 291 n n C8 N MC3 sing 292 n n C8 H81 MC3 sing 293 n n C8 H82 MC3 sing 294 n n C8 H83 MC3 sing 295 n n C11 C12 MC3 sing 296 n n C11 O3 MC3 sing 297 n n C11 O11 MC3 doub 298 n n C12 C13 MC3 sing 299 n n C12 H121 MC3 sing 300 n n C12 H122 MC3 sing 301 n n C13 C14 MC3 sing 302 n n C13 H131 MC3 sing 303 n n C13 H132 MC3 sing 304 n n C14 C15 MC3 sing 305 n n C14 H141 MC3 sing 306 n n C14 H142 MC3 sing 307 n n C15 C16 MC3 sing 308 n n C15 H151 MC3 sing 309 n n C15 H152 MC3 sing 310 n n C16 C17 MC3 sing 311 n n C16 H161 MC3 sing 312 n n C16 H162 MC3 sing 313 n n C17 C18 MC3 sing 314 n n C17 H171 MC3 sing 315 n n C17 H172 MC3 sing 316 n n C18 C19 MC3 sing 317 n n C18 H181 MC3 sing 318 n n C18 H182 MC3 sing 319 n n C19 C20 MC3 sing 320 n n C19 H191 MC3 sing 321 n n C19 H192 MC3 sing 322 n n C20 C21 MC3 sing 323 n n C20 H201 MC3 sing 324 n n C20 H202 MC3 sing 325 n n C21 C22 MC3 sing 326 n n C21 H211 MC3 sing 327 n n C21 H212 MC3 sing 328 n n C22 C23 MC3 sing 329 n n C22 H221 MC3 sing 330 n n C22 H222 MC3 sing 331 n n C23 C24 MC3 sing 332 n n C23 H231 MC3 sing 333 n n C23 H232 MC3 sing 334 n n C24 H241 MC3 sing 335 n n C24 H242 MC3 sing 336 n n C24 H243 MC3 sing 337 n n C31 C32 MC3 sing 338 n n C31 O2 MC3 sing 339 n n C31 O31 MC3 doub 340 n n C32 C33 MC3 sing 341 n n C32 H321 MC3 sing 342 n n C32 H322 MC3 sing 343 n n C33 C34 MC3 sing 344 n n C33 H331 MC3 sing 345 n n C33 H332 MC3 sing 346 n n C34 C35 MC3 sing 347 n n C34 H341 MC3 sing 348 n n C34 H342 MC3 sing 349 n n C35 C36 MC3 sing 350 n n C35 H351 MC3 sing 351 n n C35 H352 MC3 sing 352 n n C36 C37 MC3 sing 353 n n C36 H361 MC3 sing 354 n n C36 H362 MC3 sing 355 n n C37 C38 MC3 sing 356 n n C37 H371 MC3 sing 357 n n C37 H372 MC3 sing 358 n n C38 C39 MC3 sing 359 n n C38 H381 MC3 sing 360 n n C38 H382 MC3 sing 361 n n C39 C40 MC3 sing 362 n n C39 H391 MC3 sing 363 n n C39 H392 MC3 sing 364 n n C40 C41 MC3 sing 365 n n C40 H401 MC3 sing 366 n n C40 H402 MC3 sing 367 n n C41 C42 MC3 sing 368 n n C41 H411 MC3 sing 369 n n C41 H412 MC3 sing 370 n n C42 C43 MC3 sing 371 n n C42 H421 MC3 sing 372 n n C42 H422 MC3 sing 373 n n C43 C44 MC3 sing 374 n n C43 H431 MC3 sing 375 n n C43 H432 MC3 sing 376 n n C44 H441 MC3 sing 377 n n C44 H442 MC3 sing 378 n n C44 H443 MC3 sing 379 n n O1P P MC3 doub 380 n n O2P P MC3 sing 381 n n O3P P MC3 sing 382 n n O4P P MC3 sing 383 n n # _atom_sites.entry_id 5KMH _atom_sites.fract_transf_matrix[1][1] 0.007966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 1301 2 CA CA . F 2 CA A 1 1302 3 CA CA . G 3 MC3 A 1 1303 1308 MC3 PX5 . H 3 MC3 A 1 1304 1310 MC3 PX5 . I 4 PX6 A 1 1305 1305 PX6 PX6 . J 3 MC3 A 1 1306 1307 MC3 PX7 . K 4 PX6 B 1 1301 1304 PX6 PX6 . L 3 MC3 B 1 1302 1306 MC3 PX7 . M 4 PX6 C 1 1301 1302 PX6 PX6 . N 5 6U8 C 1 1302 1 6U8 VER . O 2 CA D 1 1301 1 CA CA . P 3 MC3 D 1 1302 1309 MC3 PX5 . Q 4 PX6 D 1 1303 1303 PX6 PX6 . R 3 MC3 D 1 1304 1305 MC3 PX7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MC3 . . . R 3 -27.188 44.322 8.477 1 100.37 ? C1 MC3 1304 D 1 HETATM 2 C C2 MC3 . . . R 3 -25.961 43.459 8.647 1 89.06 ? C2 MC3 1304 D 1 HETATM 3 C C3 MC3 . . . R 3 -25.211 43.97 9.863 1 83.91 ? C3 MC3 1304 D 1 HETATM 4 O O2 MC3 . . . R 3 -26.348 42.14 8.856 1 77.55 ? O2 MC3 1304 D 1 HETATM 5 O O3 MC3 . . . R 3 -24.265 43.01 10.245 1 81.42 ? O3 MC3 1304 D 1 HETATM 6 O O1P MC3 . . . R 3 -27.151 43.991 4.762 1 110.83 -1 O1P MC3 1304 D 1 HETATM 7 O O2P MC3 . . . R 3 -28.653 45.698 5.733 1 98.13 -1 O2P MC3 1304 D 1 HETATM 8 O O3P MC3 . . . R 3 -27.74 43.915 7.263 1 108.89 ? O3P MC3 1304 D 1 HETATM 9 O O4P MC3 . . . R 3 -26.263 45.74 6.287 1 110.36 ? O4P MC3 1304 D 1 HETATM 10 P P MC3 . . . R 3 -27.441 44.85 5.965 1 106.18 ? P MC3 1304 D 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #