data_5KMQ # _model_server_result.job_id Nl5HKfRxWPjGyUQUJZhK4w _model_server_result.datetime_utc '2025-01-12 13:03:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 5KMQ # _exptl.entry_id 5KMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.04 _cell.angle_gamma 90 _cell.entry_id 5KMQ _cell.length_a 72.383 _cell.length_b 114.366 _cell.length_c 130.462 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5KMQ _atom_sites.fract_transf_matrix[1][1] 0.013815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000493 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 601 601 FAD FAD . F 2 FAD B 1 601 601 FAD FAD . G 2 FAD C 1 601 601 FAD FAD . H 2 FAD D 1 601 601 FAD FAD . I 3 HOH A 1 701 4 HOH HOH . I 3 HOH A 2 702 21 HOH HOH . I 3 HOH A 3 703 18 HOH HOH . I 3 HOH A 4 704 8 HOH HOH . I 3 HOH A 5 705 19 HOH HOH . I 3 HOH A 6 706 5 HOH HOH . I 3 HOH A 7 707 9 HOH HOH . I 3 HOH A 8 708 25 HOH HOH . I 3 HOH A 9 709 23 HOH HOH . I 3 HOH A 10 710 10 HOH HOH . I 3 HOH A 11 711 28 HOH HOH . I 3 HOH A 12 712 33 HOH HOH . I 3 HOH A 13 713 6 HOH HOH . I 3 HOH A 14 714 3 HOH HOH . I 3 HOH A 15 715 22 HOH HOH . I 3 HOH A 16 716 30 HOH HOH . I 3 HOH A 17 717 11 HOH HOH . I 3 HOH A 18 718 20 HOH HOH . I 3 HOH A 19 719 31 HOH HOH . I 3 HOH A 20 720 17 HOH HOH . I 3 HOH A 21 721 13 HOH HOH . I 3 HOH A 22 722 34 HOH HOH . I 3 HOH A 23 723 35 HOH HOH . I 3 HOH A 24 724 15 HOH HOH . I 3 HOH A 25 725 16 HOH HOH . I 3 HOH A 26 726 27 HOH HOH . I 3 HOH A 27 727 26 HOH HOH . I 3 HOH A 28 728 32 HOH HOH . I 3 HOH A 29 729 36 HOH HOH . I 3 HOH A 30 730 29 HOH HOH . I 3 HOH A 31 731 12 HOH HOH . J 3 HOH B 1 701 56 HOH HOH . J 3 HOH B 2 702 55 HOH HOH . J 3 HOH B 3 703 37 HOH HOH . J 3 HOH B 4 704 48 HOH HOH . J 3 HOH B 5 705 58 HOH HOH . J 3 HOH B 6 706 59 HOH HOH . J 3 HOH B 7 707 45 HOH HOH . J 3 HOH B 8 708 44 HOH HOH . J 3 HOH B 9 709 40 HOH HOH . J 3 HOH B 10 710 50 HOH HOH . J 3 HOH B 11 711 57 HOH HOH . J 3 HOH B 12 712 43 HOH HOH . J 3 HOH B 13 713 54 HOH HOH . J 3 HOH B 14 714 39 HOH HOH . J 3 HOH B 15 715 63 HOH HOH . J 3 HOH B 16 716 53 HOH HOH . J 3 HOH B 17 717 51 HOH HOH . J 3 HOH B 18 718 60 HOH HOH . J 3 HOH B 19 719 65 HOH HOH . J 3 HOH B 20 720 46 HOH HOH . J 3 HOH B 21 721 41 HOH HOH . K 3 HOH C 1 701 76 HOH HOH . K 3 HOH C 2 702 73 HOH HOH . K 3 HOH C 3 703 68 HOH HOH . L 3 HOH D 1 701 77 HOH HOH . L 3 HOH D 2 702 89 HOH HOH . L 3 HOH D 3 703 82 HOH HOH . L 3 HOH D 4 704 78 HOH HOH . L 3 HOH D 5 705 66 HOH HOH . L 3 HOH D 6 706 94 HOH HOH . L 3 HOH D 7 707 69 HOH HOH . L 3 HOH D 8 708 91 HOH HOH . L 3 HOH D 9 709 61 HOH HOH . L 3 HOH D 10 710 52 HOH HOH . L 3 HOH D 11 711 80 HOH HOH . L 3 HOH D 12 712 93 HOH HOH . L 3 HOH D 13 713 87 HOH HOH . L 3 HOH D 14 714 72 HOH HOH . L 3 HOH D 15 715 86 HOH HOH . L 3 HOH D 16 716 81 HOH HOH . L 3 HOH D 17 717 84 HOH HOH . L 3 HOH D 18 718 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 2 -26.207 25.529 -29.64 1 62.75 ? PA FAD 601 C 1 HETATM 2 O O1A FAD . . . G 2 -25.366 24.358 -29.206 1 51.08 ? O1A FAD 601 C 1 HETATM 3 O O2A FAD . . . G 2 -26.228 25.647 -31.123 1 69.34 ? O2A FAD 601 C 1 HETATM 4 O O5B FAD . . . G 2 -27.727 25.314 -29.138 1 64.69 ? O5B FAD 601 C 1 HETATM 5 C C5B FAD . . . G 2 -28.799 25.774 -29.953 1 62.41 ? C5B FAD 601 C 1 HETATM 6 C C4B FAD . . . G 2 -30.05 24.876 -29.633 1 62.42 ? C4B FAD 601 C 1 HETATM 7 O O4B FAD . . . G 2 -31.128 25.574 -29.75 1 61.2 ? O4B FAD 601 C 1 HETATM 8 C C3B FAD . . . G 2 -30.142 23.754 -30.659 1 59.57 ? C3B FAD 601 C 1 HETATM 9 O O3B FAD . . . G 2 -30.444 22.551 -30.047 1 56.48 ? O3B FAD 601 C 1 HETATM 10 C C2B FAD . . . G 2 -31.262 24.199 -31.592 1 62.22 ? C2B FAD 601 C 1 HETATM 11 O O2B FAD . . . G 2 -31.931 22.969 -32.213 1 65.71 ? O2B FAD 601 C 1 HETATM 12 C C1B FAD . . . G 2 -32.063 24.87 -30.837 1 55.54 ? C1B FAD 601 C 1 HETATM 13 N N9A FAD . . . G 2 -32.719 25.881 -31.585 1 56.53 ? N9A FAD 601 C 1 HETATM 14 C C8A FAD . . . G 2 -32.16 26.815 -32.393 1 53.46 ? C8A FAD 601 C 1 HETATM 15 N N7A FAD . . . G 2 -33.163 27.576 -32.912 1 58.61 ? N7A FAD 601 C 1 HETATM 16 C C5A FAD . . . G 2 -34.339 27.111 -32.432 1 58.31 ? C5A FAD 601 C 1 HETATM 17 C C6A FAD . . . G 2 -35.649 27.514 -32.629 1 59.47 ? C6A FAD 601 C 1 HETATM 18 N N6A FAD . . . G 2 -36.281 28.563 -33.418 1 61.3 ? N6A FAD 601 C 1 HETATM 19 N N1A FAD . . . G 2 -36.65 26.861 -32.006 1 58.18 ? N1A FAD 601 C 1 HETATM 20 C C2A FAD . . . G 2 -36.371 25.805 -31.179 1 61.8 ? C2A FAD 601 C 1 HETATM 21 N N3A FAD . . . G 2 -35.083 25.406 -30.974 1 59.36 ? N3A FAD 601 C 1 HETATM 22 C C4A FAD . . . G 2 -34.063 26.063 -31.607 1 62.88 ? C4A FAD 601 C 1 HETATM 23 N N1 FAD . . . G 2 -16.735 26.018 -28.143 1 66.74 ? N1 FAD 601 C 1 HETATM 24 C C2 FAD . . . G 2 -15.737 25.598 -27.155 1 68.95 ? C2 FAD 601 C 1 HETATM 25 O O2 FAD . . . G 2 -15.732 26.11 -26.028 1 72.2 ? O2 FAD 601 C 1 HETATM 26 N N3 FAD . . . G 2 -14.752 24.577 -27.514 1 61.65 ? N3 FAD 601 C 1 HETATM 27 C C4 FAD . . . G 2 -14.77 24 -28.822 1 65.96 ? C4 FAD 601 C 1 HETATM 28 O O4 FAD . . . G 2 -13.998 23.199 -29.114 1 71.9 ? O4 FAD 601 C 1 HETATM 29 C C4X FAD . . . G 2 -15.796 24.444 -29.814 1 67.08 ? C4X FAD 601 C 1 HETATM 30 N N5 FAD . . . G 2 -15.822 23.867 -31.121 1 64.86 ? N5 FAD 601 C 1 HETATM 31 C C5X FAD . . . G 2 -16.853 24.306 -32.098 1 57.51 ? C5X FAD 601 C 1 HETATM 32 C C6 FAD . . . G 2 -16.894 23.74 -33.396 1 59.53 ? C6 FAD 601 C 1 HETATM 33 C C7 FAD . . . G 2 -17.866 24.165 -34.312 1 68.53 ? C7 FAD 601 C 1 HETATM 34 C C7M FAD . . . G 2 -17.562 23.313 -35.587 1 60.74 ? C7M FAD 601 C 1 HETATM 35 C C8 FAD . . . G 2 -18.803 25.149 -33.941 1 58.94 ? C8 FAD 601 C 1 HETATM 36 C C8M FAD . . . G 2 -19.847 25.553 -35.039 1 62.37 ? C8M FAD 601 C 1 HETATM 37 C C9 FAD . . . G 2 -18.759 25.7 -32.658 1 61.43 ? C9 FAD 601 C 1 HETATM 38 C C9A FAD . . . G 2 -17.782 25.277 -31.74 1 63.58 ? C9A FAD 601 C 1 HETATM 39 N N10 FAD . . . G 2 -17.76 25.87 -30.41 1 65.49 ? N10 FAD 601 C 1 HETATM 40 C C10 FAD . . . G 2 -16.76 25.44 -29.45 1 65.05 ? C10 FAD 601 C 1 HETATM 41 C C1' FAD . . . G 2 -18.775 26.905 -30.053 1 59.39 ? C1' FAD 601 C 1 HETATM 42 C C2' FAD . . . G 2 -19.98 26.198 -29.392 1 67.59 ? C2' FAD 601 C 1 HETATM 43 O O2' FAD . . . G 2 -20.244 24.985 -30.031 1 64.39 ? O2' FAD 601 C 1 HETATM 44 C C3' FAD . . . G 2 -21.221 27.048 -29.479 1 67.23 ? C3' FAD 601 C 1 HETATM 45 O O3' FAD . . . G 2 -20.922 28.364 -29.131 1 65.27 ? O3' FAD 601 C 1 HETATM 46 C C4' FAD . . . G 2 -22.249 26.479 -28.499 1 71.01 ? C4' FAD 601 C 1 HETATM 47 O O4' FAD . . . G 2 -23.162 25.753 -29.214 1 70.61 ? O4' FAD 601 C 1 HETATM 48 C C5' FAD . . . G 2 -22.958 27.63 -27.755 1 68.23 ? C5' FAD 601 C 1 HETATM 49 O O5' FAD . . . G 2 -24.005 27.126 -26.949 1 62.3 ? O5' FAD 601 C 1 HETATM 50 P P FAD . . . G 2 -25.527 27.234 -27.468 1 65.64 ? P FAD 601 C 1 HETATM 51 O O1P FAD . . . G 2 -26.333 26.28 -26.641 1 86.52 ? O1P FAD 601 C 1 HETATM 52 O O2P FAD . . . G 2 -26.088 28.652 -27.294 1 63.63 ? O2P FAD 601 C 1 HETATM 53 O O3P FAD . . . G 2 -25.604 26.865 -29.004 1 76.17 ? O3P FAD 601 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 53 #