data_5KMQ
#
_model_server_result.job_id            HD2s_roFxezU731cmKgrtw 
_model_server_result.datetime_utc      '2025-01-12 13:07:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kmq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    5KMQ 
#
_exptl.entry_id    5KMQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.04 
_cell.angle_gamma         90 
_cell.entry_id            5KMQ 
_cell.length_a            72.383 
_cell.length_b            114.366 
_cell.length_c            130.462 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KMQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5KMQ 
_atom_sites.fract_transf_matrix[1][1]    0.013815 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000493 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008744 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00767 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 601 601 FAD FAD . 
F 2 FAD B 1 601 601 FAD FAD . 
G 2 FAD C 1 601 601 FAD FAD . 
H 2 FAD D 1 601 601 FAD FAD . 
I 3 HOH A 1 701 4 HOH HOH . 
I 3 HOH A 2 702 21 HOH HOH . 
I 3 HOH A 3 703 18 HOH HOH . 
I 3 HOH A 4 704 8 HOH HOH . 
I 3 HOH A 5 705 19 HOH HOH . 
I 3 HOH A 6 706 5 HOH HOH . 
I 3 HOH A 7 707 9 HOH HOH . 
I 3 HOH A 8 708 25 HOH HOH . 
I 3 HOH A 9 709 23 HOH HOH . 
I 3 HOH A 10 710 10 HOH HOH . 
I 3 HOH A 11 711 28 HOH HOH . 
I 3 HOH A 12 712 33 HOH HOH . 
I 3 HOH A 13 713 6 HOH HOH . 
I 3 HOH A 14 714 3 HOH HOH . 
I 3 HOH A 15 715 22 HOH HOH . 
I 3 HOH A 16 716 30 HOH HOH . 
I 3 HOH A 17 717 11 HOH HOH . 
I 3 HOH A 18 718 20 HOH HOH . 
I 3 HOH A 19 719 31 HOH HOH . 
I 3 HOH A 20 720 17 HOH HOH . 
I 3 HOH A 21 721 13 HOH HOH . 
I 3 HOH A 22 722 34 HOH HOH . 
I 3 HOH A 23 723 35 HOH HOH . 
I 3 HOH A 24 724 15 HOH HOH . 
I 3 HOH A 25 725 16 HOH HOH . 
I 3 HOH A 26 726 27 HOH HOH . 
I 3 HOH A 27 727 26 HOH HOH . 
I 3 HOH A 28 728 32 HOH HOH . 
I 3 HOH A 29 729 36 HOH HOH . 
I 3 HOH A 30 730 29 HOH HOH . 
I 3 HOH A 31 731 12 HOH HOH . 
J 3 HOH B 1 701 56 HOH HOH . 
J 3 HOH B 2 702 55 HOH HOH . 
J 3 HOH B 3 703 37 HOH HOH . 
J 3 HOH B 4 704 48 HOH HOH . 
J 3 HOH B 5 705 58 HOH HOH . 
J 3 HOH B 6 706 59 HOH HOH . 
J 3 HOH B 7 707 45 HOH HOH . 
J 3 HOH B 8 708 44 HOH HOH . 
J 3 HOH B 9 709 40 HOH HOH . 
J 3 HOH B 10 710 50 HOH HOH . 
J 3 HOH B 11 711 57 HOH HOH . 
J 3 HOH B 12 712 43 HOH HOH . 
J 3 HOH B 13 713 54 HOH HOH . 
J 3 HOH B 14 714 39 HOH HOH . 
J 3 HOH B 15 715 63 HOH HOH . 
J 3 HOH B 16 716 53 HOH HOH . 
J 3 HOH B 17 717 51 HOH HOH . 
J 3 HOH B 18 718 60 HOH HOH . 
J 3 HOH B 19 719 65 HOH HOH . 
J 3 HOH B 20 720 46 HOH HOH . 
J 3 HOH B 21 721 41 HOH HOH . 
K 3 HOH C 1 701 76 HOH HOH . 
K 3 HOH C 2 702 73 HOH HOH . 
K 3 HOH C 3 703 68 HOH HOH . 
L 3 HOH D 1 701 77 HOH HOH . 
L 3 HOH D 2 702 89 HOH HOH . 
L 3 HOH D 3 703 82 HOH HOH . 
L 3 HOH D 4 704 78 HOH HOH . 
L 3 HOH D 5 705 66 HOH HOH . 
L 3 HOH D 6 706 94 HOH HOH . 
L 3 HOH D 7 707 69 HOH HOH . 
L 3 HOH D 8 708 91 HOH HOH . 
L 3 HOH D 9 709 61 HOH HOH . 
L 3 HOH D 10 710 52 HOH HOH . 
L 3 HOH D 11 711 80 HOH HOH . 
L 3 HOH D 12 712 93 HOH HOH . 
L 3 HOH D 13 713 87 HOH HOH . 
L 3 HOH D 14 714 72 HOH HOH . 
L 3 HOH D 15 715 86 HOH HOH . 
L 3 HOH D 16 716 81 HOH HOH . 
L 3 HOH D 17 717 84 HOH HOH . 
L 3 HOH D 18 718 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . H 2 -20.867 -3.258 -71.87 1 34.71 ? PA FAD 601 D 1 
HETATM 2 O O1A FAD . . . H 2 -20.862 -4.254 -70.755 1 42.72 ? O1A FAD 601 D 1 
HETATM 3 O O2A FAD . . . H 2 -21.459 -1.952 -71.452 1 40.5 ? O2A FAD 601 D 1 
HETATM 4 O O5B FAD . . . H 2 -19.335 -3.005 -72.312 1 46.58 ? O5B FAD 601 D 1 
HETATM 5 C C5B FAD . . . H 2 -19.009 -1.786 -72.971 1 41.95 ? C5B FAD 601 D 1 
HETATM 6 C C4B FAD . . . H 2 -17.504 -1.466 -72.69 1 41.88 ? C4B FAD 601 D 1 
HETATM 7 O O4B FAD . . . H 2 -17.067 -0.668 -73.605 1 43.95 ? O4B FAD 601 D 1 
HETATM 8 C C3B FAD . . . H 2 -17.408 -0.715 -71.367 1 38.97 ? C3B FAD 601 D 1 
HETATM 9 O O3B FAD . . . H 2 -16.2 -0.956 -70.739 1 41.42 ? O3B FAD 601 D 1 
HETATM 10 C C2B FAD . . . H 2 -17.423 0.735 -71.807 1 49.09 ? C2B FAD 601 D 1 
HETATM 11 O O2B FAD . . . H 2 -16.805 1.579 -70.696 1 37.86 ? O2B FAD 601 D 1 
HETATM 12 C C1B FAD . . . H 2 -16.681 0.705 -72.865 1 53.05 ? C1B FAD 601 D 1 
HETATM 13 N N9A FAD . . . H 2 -16.935 1.803 -73.732 1 42.76 ? N9A FAD 601 D 1 
HETATM 14 C C8A FAD . . . H 2 -18.138 2.332 -74.052 1 43.25 ? C8A FAD 601 D 1 
HETATM 15 N N7A FAD . . . H 2 -17.919 3.373 -74.891 1 47.36 ? N7A FAD 601 D 1 
HETATM 16 C C5A FAD . . . H 2 -16.589 3.489 -75.098 1 44.8 ? C5A FAD 601 D 1 
HETATM 17 C C6A FAD . . . H 2 -15.842 4.365 -75.878 1 45.92 ? C6A FAD 601 D 1 
HETATM 18 N N6A FAD . . . H 2 -16.187 5.483 -76.742 1 34.45 ? N6A FAD 601 D 1 
HETATM 19 N N1A FAD . . . H 2 -14.493 4.263 -75.905 1 42.19 ? N1A FAD 601 D 1 
HETATM 20 C C2A FAD . . . H 2 -13.876 3.284 -75.165 1 41.95 ? C2A FAD 601 D 1 
HETATM 21 N N3A FAD . . . H 2 -14.614 2.413 -74.404 1 39.92 ? N3A FAD 601 D 1 
HETATM 22 C C4A FAD . . . H 2 -15.976 2.516 -74.373 1 42.28 ? C4A FAD 601 D 1 
HETATM 23 N N1 FAD . . . H 2 -27.853 -9.423 -69.555 1 52.71 ? N1 FAD 601 D 1 
HETATM 24 C C2 FAD . . . H 2 -28.05 -10.843 -69.263 1 54 ? C2 FAD 601 D 1 
HETATM 25 O O2 FAD . . . H 2 -27.873 -11.697 -70.136 1 58.12 ? O2 FAD 601 D 1 
HETATM 26 N N3 FAD . . . H 2 -28.458 -11.257 -67.927 1 56.51 ? N3 FAD 601 D 1 
HETATM 27 C C4 FAD . . . H 2 -28.669 -10.28 -66.913 1 57.1 ? C4 FAD 601 D 1 
HETATM 28 O O4 FAD . . . H 2 -28.997 -10.603 -65.857 1 59.69 ? O4 FAD 601 D 1 
HETATM 29 C C4X FAD . . . H 2 -28.462 -8.838 -67.23 1 55.44 ? C4X FAD 601 D 1 
HETATM 30 N N5 FAD . . . H 2 -28.668 -7.859 -66.216 1 56.16 ? N5 FAD 601 D 1 
HETATM 31 C C5X FAD . . . H 2 -28.467 -6.423 -66.512 1 53.68 ? C5X FAD 601 D 1 
HETATM 32 C C6 FAD . . . H 2 -28.674 -5.448 -65.499 1 53.65 ? C6 FAD 601 D 1 
HETATM 33 C C7 FAD . . . H 2 -28.477 -4.094 -65.783 1 51.04 ? C7 FAD 601 D 1 
HETATM 34 C C7M FAD . . . H 2 -28.794 -3.377 -64.434 1 47.72 ? C7M FAD 601 D 1 
HETATM 35 C C8 FAD . . . H 2 -28.075 -3.702 -67.065 1 44.54 ? C8 FAD 601 D 1 
HETATM 36 C C8M FAD . . . H 2 -27.89 -2.161 -67.241 1 42.12 ? C8M FAD 601 D 1 
HETATM 37 C C9 FAD . . . H 2 -27.88 -4.662 -68.067 1 52.46 ? C9 FAD 601 D 1 
HETATM 38 C C9A FAD . . . H 2 -28.073 -6.031 -67.786 1 57.35 ? C9A FAD 601 D 1 
HETATM 39 N N10 FAD . . . H 2 -27.857 -7.026 -68.829 1 49.89 ? N10 FAD 601 D 1 
HETATM 40 C C10 FAD . . . H 2 -28.056 -8.436 -68.539 1 53.25 ? C10 FAD 601 D 1 
HETATM 41 C C1' FAD . . . H 2 -27.443 -6.583 -70.188 1 46.45 ? C1' FAD 601 D 1 
HETATM 42 C C2' FAD . . . H 2 -25.911 -6.61 -70.284 1 48.22 ? C2' FAD 601 D 1 
HETATM 43 O O2' FAD . . . H 2 -25.387 -5.922 -69.196 1 46.56 ? O2' FAD 601 D 1 
HETATM 44 C C3' FAD . . . H 2 -25.464 -5.928 -71.55 1 49.18 ? C3' FAD 601 D 1 
HETATM 45 O O3' FAD . . . H 2 -26.13 -6.505 -72.63 1 50.97 ? O3' FAD 601 D 1 
HETATM 46 C C4' FAD . . . H 2 -23.96 -6.162 -71.708 1 46.57 ? C4' FAD 601 D 1 
HETATM 47 O O4' FAD . . . H 2 -23.258 -5.146 -71.113 1 43.68 ? O4' FAD 601 D 1 
HETATM 48 C C5' FAD . . . H 2 -23.608 -6.253 -73.206 1 43.05 ? C5' FAD 601 D 1 
HETATM 49 O O5' FAD . . . H 2 -22.209 -6.416 -73.341 1 45.39 ? O5' FAD 601 D 1 
HETATM 50 P P FAD . . . H 2 -21.358 -5.162 -73.879 1 40.19 ? P FAD 601 D 1 
HETATM 51 O O1P FAD . . . H 2 -19.9 -5.462 -73.779 1 42.55 ? O1P FAD 601 D 1 
HETATM 52 O O2P FAD . . . H 2 -21.765 -4.935 -75.334 1 51.5 ? O2P FAD 601 D 1 
HETATM 53 O O3P FAD . . . H 2 -21.702 -3.856 -73.078 1 45.55 ? O3P FAD 601 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#