data_5KMR
#
_model_server_result.job_id            ibPYiEfFQjOrplXnWlgC2w 
_model_server_result.datetime_utc      '2025-01-12 11:07:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kmr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":601}' 
#
_entry.id    5KMR 
#
_exptl.entry_id    5KMR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.53 
_cell.angle_gamma         90 
_cell.entry_id            5KMR 
_cell.length_a            72.061 
_cell.length_b            114.206 
_cell.length_c            130.957 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KMR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5KMR 
_atom_sites.fract_transf_matrix[1][1]    0.013877 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000371 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007639 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD B 1 601 601 FAD FAD . 
F 2 FAD A 1 601 601 FAD FAD . 
G 3 NAD A 1 602 602 NAD NAD . 
H 2 FAD C 1 601 601 FAD FAD . 
I 3 NAD C 1 602 602 NAD NAD . 
J 2 FAD D 1 601 601 FAD FAD . 
K 3 NAD D 1 602 602 NAD NAD . 
L 4 HOH B 1 701 9 HOH HOH . 
L 4 HOH B 2 702 2 HOH HOH . 
L 4 HOH B 3 703 10 HOH HOH . 
M 4 HOH A 1 701 5 HOH HOH . 
M 4 HOH A 2 702 4 HOH HOH . 
M 4 HOH A 3 703 16 HOH HOH . 
M 4 HOH A 4 704 11 HOH HOH . 
M 4 HOH A 5 705 19 HOH HOH . 
M 4 HOH A 6 706 12 HOH HOH . 
M 4 HOH A 7 707 3 HOH HOH . 
M 4 HOH A 8 708 18 HOH HOH . 
N 4 HOH C 1 701 22 HOH HOH . 
N 4 HOH C 2 702 29 HOH HOH . 
N 4 HOH C 3 703 21 HOH HOH . 
O 4 HOH D 1 701 23 HOH HOH . 
O 4 HOH D 2 702 6 HOH HOH . 
O 4 HOH D 3 703 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . H 2 9.921 25.394 -28.684 1 77.07 ? PA FAD 601 C 1 
HETATM 2 O O1A FAD . . . H 2 10.111 23.954 -28.324 1 77.71 ? O1A FAD 601 C 1 
HETATM 3 O O2A FAD . . . H 2 10.061 25.564 -30.158 1 77.49 ? O2A FAD 601 C 1 
HETATM 4 O O5B FAD . . . H 2 8.438 25.874 -28.231 1 78.04 ? O5B FAD 601 C 1 
HETATM 5 C C5B FAD . . . H 2 7.369 25.708 -29.167 1 78.78 ? C5B FAD 601 C 1 
HETATM 6 C C4B FAD . . . H 2 6.39 24.574 -28.7 1 79.2 ? C4B FAD 601 C 1 
HETATM 7 O O4B FAD . . . H 2 5.047 25.058 -28.663 1 81.01 ? O4B FAD 601 C 1 
HETATM 8 C C3B FAD . . . H 2 6.331 23.441 -29.708 1 79.36 ? C3B FAD 601 C 1 
HETATM 9 O O3B FAD . . . H 2 5.94 22.26 -29.095 1 80.99 ? O3B FAD 601 C 1 
HETATM 10 C C2B FAD . . . H 2 5.26 23.903 -30.694 1 80.35 ? C2B FAD 601 C 1 
HETATM 11 O O2B FAD . . . H 2 4.677 22.7 -31.437 1 80.98 ? O2B FAD 601 C 1 
HETATM 12 C C1B FAD . . . H 2 4.344 24.473 -29.985 1 81.48 ? C1B FAD 601 C 1 
HETATM 13 N N9A FAD . . . H 2 3.747 25.534 -30.715 1 82.17 ? N9A FAD 601 C 1 
HETATM 14 C C8A FAD . . . H 2 4.335 26.354 -31.624 1 81.68 ? C8A FAD 601 C 1 
HETATM 15 N N7A FAD . . . H 2 3.394 27.222 -32.075 1 82.61 ? N7A FAD 601 C 1 
HETATM 16 C C5A FAD . . . H 2 2.227 26.938 -31.444 1 83.47 ? C5A FAD 601 C 1 
HETATM 17 C C6A FAD . . . H 2 0.966 27.505 -31.527 1 86.11 ? C6A FAD 601 C 1 
HETATM 18 N N6A FAD . . . H 2 0.411 28.603 -32.305 1 87.28 ? N6A FAD 601 C 1 
HETATM 19 N N1A FAD . . . H 2 -0.044 27.018 -30.772 1 87.06 ? N1A FAD 601 C 1 
HETATM 20 C C2A FAD . . . H 2 0.179 25.964 -29.924 1 86.36 ? C2A FAD 601 C 1 
HETATM 21 N N3A FAD . . . H 2 1.423 25.403 -29.841 1 85.14 ? N3A FAD 601 C 1 
HETATM 22 C C4A FAD . . . H 2 2.447 25.893 -30.603 1 83.39 ? C4A FAD 601 C 1 
HETATM 23 N N1 FAD . . . H 2 19.421 25.011 -27.227 1 84.01 ? N1 FAD 601 C 1 
HETATM 24 C C2 FAD . . . H 2 20.302 24.473 -26.189 1 84.57 ? C2 FAD 601 C 1 
HETATM 25 O O2 FAD . . . H 2 20.306 24.972 -25.058 1 83.35 ? O2 FAD 601 C 1 
HETATM 26 N N3 FAD . . . H 2 21.176 23.345 -26.499 1 86.31 ? N3 FAD 601 C 1 
HETATM 27 C C4 FAD . . . H 2 21.158 22.777 -27.809 1 87.44 ? C4 FAD 601 C 1 
HETATM 28 O O4 FAD . . . H 2 21.845 21.892 -28.061 1 95.05 ? O4 FAD 601 C 1 
HETATM 29 C C4X FAD . . . H 2 20.251 23.344 -28.853 1 85.27 ? C4X FAD 601 C 1 
HETATM 30 N N5 FAD . . . H 2 20.23 22.783 -30.164 1 87.27 ? N5 FAD 601 C 1 
HETATM 31 C C5X FAD . . . H 2 19.323 23.347 -31.199 1 81.1 ? C5X FAD 601 C 1 
HETATM 32 C C6 FAD . . . H 2 19.303 22.788 -32.503 1 77.89 ? C6 FAD 601 C 1 
HETATM 33 C C7 FAD . . . H 2 18.45 23.32 -33.474 1 76.84 ? C7 FAD 601 C 1 
HETATM 34 C C7M FAD . . . H 2 18.732 22.441 -34.731 1 72.56 ? C7M FAD 601 C 1 
HETATM 35 C C8 FAD . . . H 2 17.616 24.403 -33.16 1 77.03 ? C8 FAD 601 C 1 
HETATM 36 C C8M FAD . . . H 2 16.713 24.897 -34.343 1 72.76 ? C8M FAD 601 C 1 
HETATM 37 C C9 FAD . . . H 2 17.637 24.954 -31.869 1 78.94 ? C9 FAD 601 C 1 
HETATM 38 C C9A FAD . . . H 2 18.495 24.421 -30.89 1 80.51 ? C9A FAD 601 C 1 
HETATM 39 N N10 FAD . . . H 2 18.514 25 -29.555 1 83.04 ? N10 FAD 601 C 1 
HETATM 40 C C10 FAD . . . H 2 19.397 24.449 -28.54 1 84.41 ? C10 FAD 601 C 1 
HETATM 41 C C1' FAD . . . H 2 17.617 26.147 -29.232 1 82.02 ? C1' FAD 601 C 1 
HETATM 42 C C2' FAD . . . H 2 16.432 25.587 -28.414 1 79.67 ? C2' FAD 601 C 1 
HETATM 43 O O2' FAD . . . H 2 16.051 24.356 -28.952 1 78.22 ? O2' FAD 601 C 1 
HETATM 44 C C3' FAD . . . H 2 15.251 26.525 -28.436 1 79.1 ? C3' FAD 601 C 1 
HETATM 45 O O3' FAD . . . H 2 15.662 27.809 -28.076 1 80.06 ? O3' FAD 601 C 1 
HETATM 46 C C4' FAD . . . H 2 14.206 26.011 -27.438 1 77.73 ? C4' FAD 601 C 1 
HETATM 47 O O4' FAD . . . H 2 13.27 25.267 -28.11 1 77.44 ? O4' FAD 601 C 1 
HETATM 48 C C5' FAD . . . H 2 13.514 27.195 -26.725 1 78.71 ? C5' FAD 601 C 1 
HETATM 49 O O5' FAD . . . H 2 12.485 26.723 -25.87 1 78.35 ? O5' FAD 601 C 1 
HETATM 50 P P FAD . . . H 2 10.977 26.696 -26.439 1 78.93 ? P FAD 601 C 1 
HETATM 51 O O1P FAD . . . H 2 10.154 25.72 -25.652 1 78.62 ? O1P FAD 601 C 1 
HETATM 52 O O2P FAD . . . H 2 10.363 28.099 -26.333 1 80.34 ? O2P FAD 601 C 1 
HETATM 53 O O3P FAD . . . H 2 11.029 26.263 -27.95 1 85.19 ? O3P FAD 601 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#