data_5KMR
#
_model_server_result.job_id            Rl-kudE4qycs3nwm9BWrqA 
_model_server_result.datetime_utc      '2025-01-12 10:38:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kmr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    5KMR 
#
_exptl.entry_id    5KMR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.53 
_cell.angle_gamma         90 
_cell.entry_id            5KMR 
_cell.length_a            72.061 
_cell.length_b            114.206 
_cell.length_c            130.957 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KMR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5KMR 
_atom_sites.fract_transf_matrix[1][1]    0.013877 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000371 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007639 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD B 1 601 601 FAD FAD . 
F 2 FAD A 1 601 601 FAD FAD . 
G 3 NAD A 1 602 602 NAD NAD . 
H 2 FAD C 1 601 601 FAD FAD . 
I 3 NAD C 1 602 602 NAD NAD . 
J 2 FAD D 1 601 601 FAD FAD . 
K 3 NAD D 1 602 602 NAD NAD . 
L 4 HOH B 1 701 9 HOH HOH . 
L 4 HOH B 2 702 2 HOH HOH . 
L 4 HOH B 3 703 10 HOH HOH . 
M 4 HOH A 1 701 5 HOH HOH . 
M 4 HOH A 2 702 4 HOH HOH . 
M 4 HOH A 3 703 16 HOH HOH . 
M 4 HOH A 4 704 11 HOH HOH . 
M 4 HOH A 5 705 19 HOH HOH . 
M 4 HOH A 6 706 12 HOH HOH . 
M 4 HOH A 7 707 3 HOH HOH . 
M 4 HOH A 8 708 18 HOH HOH . 
N 4 HOH C 1 701 22 HOH HOH . 
N 4 HOH C 2 702 29 HOH HOH . 
N 4 HOH C 3 703 21 HOH HOH . 
O 4 HOH D 1 701 23 HOH HOH . 
O 4 HOH D 2 702 6 HOH HOH . 
O 4 HOH D 3 703 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . J 2 14.042 -2.858 -71.959 1 58.57 ? PA FAD 601 D 1 
HETATM 2 O O1A FAD . . . J 2 14.425 -3.812 -70.87 1 59.82 ? O1A FAD 601 D 1 
HETATM 3 O O2A FAD . . . J 2 13.447 -1.63 -71.362 1 59.08 ? O2A FAD 601 D 1 
HETATM 4 O O5B FAD . . . J 2 15.356 -2.458 -72.824 1 58.48 ? O5B FAD 601 D 1 
HETATM 5 C C5B FAD . . . J 2 15.803 -1.102 -72.763 1 57.83 ? C5B FAD 601 D 1 
HETATM 6 C C4B FAD . . . J 2 17.344 -1.033 -72.489 1 58.88 ? C4B FAD 601 D 1 
HETATM 7 O O4B FAD . . . J 2 17.994 -0.228 -73.473 1 59.16 ? O4B FAD 601 D 1 
HETATM 8 C C3B FAD . . . J 2 17.624 -0.308 -71.186 1 59.67 ? C3B FAD 601 D 1 
HETATM 9 O O3B FAD . . . J 2 18.84 -0.709 -70.654 1 65.98 ? O3B FAD 601 D 1 
HETATM 10 C C2B FAD . . . J 2 17.692 1.153 -71.62 1 58.78 ? C2B FAD 601 D 1 
HETATM 11 O O2B FAD . . . J 2 18.413 1.989 -70.561 1 59.19 ? O2B FAD 601 D 1 
HETATM 12 C C1B FAD . . . J 2 18.37 1.138 -72.716 1 58.19 ? C1B FAD 601 D 1 
HETATM 13 N N9A FAD . . . J 2 18.034 2.257 -73.522 1 57.91 ? N9A FAD 601 D 1 
HETATM 14 C C8A FAD . . . J 2 16.801 2.765 -73.78 1 57.85 ? C8A FAD 601 D 1 
HETATM 15 N N7A FAD . . . J 2 16.955 3.838 -74.599 1 57.71 ? N7A FAD 601 D 1 
HETATM 16 C C5A FAD . . . J 2 18.281 3.989 -74.844 1 57.49 ? C5A FAD 601 D 1 
HETATM 17 C C6A FAD . . . J 2 18.989 4.907 -75.602 1 58.1 ? C6A FAD 601 D 1 
HETATM 18 N N6A FAD . . . J 2 18.6 6.048 -76.415 1 58.07 ? N6A FAD 601 D 1 
HETATM 19 N N1A FAD . . . J 2 20.336 4.828 -75.676 1 57.93 ? N1A FAD 601 D 1 
HETATM 20 C C2A FAD . . . J 2 21.005 3.839 -75.002 1 58.43 ? C2A FAD 601 D 1 
HETATM 21 N N3A FAD . . . J 2 20.308 2.932 -74.252 1 57.36 ? N3A FAD 601 D 1 
HETATM 22 C C4A FAD . . . J 2 18.946 3.011 -74.176 1 57.74 ? C4A FAD 601 D 1 
HETATM 23 N N1 FAD . . . J 2 6.878 -8.664 -69.197 1 71.73 ? N1 FAD 601 D 1 
HETATM 24 C C2 FAD . . . J 2 6.687 -10.086 -68.9 1 72.77 ? C2 FAD 601 D 1 
HETATM 25 O O2 FAD . . . J 2 6.804 -10.929 -69.796 1 72.75 ? O2 FAD 601 D 1 
HETATM 26 N N3 FAD . . . J 2 6.357 -10.504 -67.54 1 73.77 ? N3 FAD 601 D 1 
HETATM 27 C C4 FAD . . . J 2 6.224 -9.525 -66.512 1 74.08 ? C4 FAD 601 D 1 
HETATM 28 O O4 FAD . . . J 2 5.964 -9.844 -65.439 1 74.95 ? O4 FAD 601 D 1 
HETATM 29 C C4X FAD . . . J 2 6.422 -8.081 -66.833 1 73.5 ? C4X FAD 601 D 1 
HETATM 30 N N5 FAD . . . J 2 6.291 -7.1 -65.806 1 77.87 ? N5 FAD 601 D 1 
HETATM 31 C C5X FAD . . . J 2 6.488 -5.661 -66.123 1 73.61 ? C5X FAD 601 D 1 
HETATM 32 C C6 FAD . . . J 2 6.357 -4.68 -65.104 1 70.48 ? C6 FAD 601 D 1 
HETATM 33 C C7 FAD . . . J 2 6.545 -3.33 -65.412 1 68.53 ? C7 FAD 601 D 1 
HETATM 34 C C7M FAD . . . J 2 6.317 -2.603 -64.051 1 67.94 ? C7M FAD 601 D 1 
HETATM 35 C C8 FAD . . . J 2 6.861 -2.95 -66.725 1 68.12 ? C8 FAD 601 D 1 
HETATM 36 C C8M FAD . . . J 2 7.045 -1.409 -66.939 1 65.92 ? C8M FAD 601 D 1 
HETATM 37 C C9 FAD . . . J 2 6.989 -3.919 -67.73 1 69.25 ? C9 FAD 601 D 1 
HETATM 38 C C9A FAD . . . J 2 6.801 -5.276 -67.423 1 71.15 ? C9A FAD 601 D 1 
HETATM 39 N N10 FAD . . . J 2 6.936 -6.272 -68.475 1 70.57 ? N10 FAD 601 D 1 
HETATM 40 C C10 FAD . . . J 2 6.745 -7.68 -68.169 1 71.98 ? C10 FAD 601 D 1 
HETATM 41 C C1' FAD . . . J 2 7.277 -5.84 -69.861 1 69.37 ? C1' FAD 601 D 1 
HETATM 42 C C2' FAD . . . J 2 8.797 -6.028 -70.068 1 67.78 ? C2' FAD 601 D 1 
HETATM 43 O O2' FAD . . . J 2 9.483 -5.431 -69.009 1 67.55 ? O2' FAD 601 D 1 
HETATM 44 C C3' FAD . . . J 2 9.236 -5.381 -71.357 1 66.07 ? C3' FAD 601 D 1 
HETATM 45 O O3' FAD . . . J 2 8.449 -5.851 -72.408 1 67.44 ? O3' FAD 601 D 1 
HETATM 46 C C4' FAD . . . J 2 10.702 -5.736 -71.62 1 64.55 ? C4' FAD 601 D 1 
HETATM 47 O O4' FAD . . . J 2 11.511 -4.847 -70.962 1 63.27 ? O4' FAD 601 D 1 
HETATM 48 C C5' FAD . . . J 2 10.973 -5.662 -73.139 1 63.6 ? C5' FAD 601 D 1 
HETATM 49 O O5' FAD . . . J 2 12.323 -5.984 -73.424 1 62.62 ? O5' FAD 601 D 1 
HETATM 50 P P FAD . . . J 2 13.305 -4.777 -73.838 1 58.44 ? P FAD 601 D 1 
HETATM 51 O O1P FAD . . . J 2 14.733 -5.192 -73.658 1 59.92 ? O1P FAD 601 D 1 
HETATM 52 O O2P FAD . . . J 2 13.067 -4.384 -75.302 1 61.01 ? O2P FAD 601 D 1 
HETATM 53 O O3P FAD . . . J 2 12.975 -3.556 -72.905 1 62 ? O3P FAD 601 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           511 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#