data_5KMR
#
_model_server_result.job_id            9FQcHyl65EWJiGQCiUurfQ 
_model_server_result.datetime_utc      '2025-01-12 11:00:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kmr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":602}' 
#
_entry.id    5KMR 
#
_exptl.entry_id    5KMR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.53 
_cell.angle_gamma         90 
_cell.entry_id            5KMR 
_cell.length_a            72.061 
_cell.length_b            114.206 
_cell.length_c            130.957 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KMR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 328 n n 
PA O2A NAD sing 329 n n 
PA O5B NAD sing 330 n n 
PA O3 NAD sing 331 n n 
O2A HOA2 NAD sing 332 n n 
O5B C5B NAD sing 333 n n 
C5B C4B NAD sing 334 n n 
C5B H51A NAD sing 335 n n 
C5B H52A NAD sing 336 n n 
C4B O4B NAD sing 337 n n 
C4B C3B NAD sing 338 n n 
C4B H4B NAD sing 339 n n 
O4B C1B NAD sing 340 n n 
C3B O3B NAD sing 341 n n 
C3B C2B NAD sing 342 n n 
C3B H3B NAD sing 343 n n 
O3B HO3A NAD sing 344 n n 
C2B O2B NAD sing 345 n n 
C2B C1B NAD sing 346 n n 
C2B H2B NAD sing 347 n n 
O2B HO2A NAD sing 348 n n 
C1B N9A NAD sing 349 n n 
C1B H1B NAD sing 350 n n 
N9A C8A NAD sing 351 n y 
N9A C4A NAD sing 352 n y 
C8A N7A NAD doub 353 n y 
C8A H8A NAD sing 354 n n 
N7A C5A NAD sing 355 n y 
C5A C6A NAD sing 356 n y 
C5A C4A NAD doub 357 n y 
C6A N6A NAD sing 358 n n 
C6A N1A NAD doub 359 n y 
N6A H61A NAD sing 360 n n 
N6A H62A NAD sing 361 n n 
N1A C2A NAD sing 362 n y 
C2A N3A NAD doub 363 n y 
C2A H2A NAD sing 364 n n 
N3A C4A NAD sing 365 n y 
O3 PN NAD sing 366 n n 
PN O1N NAD doub 367 n n 
PN O2N NAD sing 368 n n 
PN O5D NAD sing 369 n n 
O5D C5D NAD sing 370 n n 
C5D C4D NAD sing 371 n n 
C5D H51N NAD sing 372 n n 
C5D H52N NAD sing 373 n n 
C4D O4D NAD sing 374 n n 
C4D C3D NAD sing 375 n n 
C4D H4D NAD sing 376 n n 
O4D C1D NAD sing 377 n n 
C3D O3D NAD sing 378 n n 
C3D C2D NAD sing 379 n n 
C3D H3D NAD sing 380 n n 
O3D HO3N NAD sing 381 n n 
C2D O2D NAD sing 382 n n 
C2D C1D NAD sing 383 n n 
C2D H2D NAD sing 384 n n 
O2D HO2N NAD sing 385 n n 
C1D N1N NAD sing 386 n n 
C1D H1D NAD sing 387 n n 
N1N C2N NAD sing 388 n y 
N1N C6N NAD doub 389 n y 
C2N C3N NAD doub 390 n y 
C2N H2N NAD sing 391 n n 
C3N C7N NAD sing 392 n n 
C3N C4N NAD sing 393 n y 
C7N O7N NAD doub 394 n n 
C7N N7N NAD sing 395 n n 
N7N H71N NAD sing 396 n n 
N7N H72N NAD sing 397 n n 
C4N C5N NAD doub 398 n y 
C4N H4N NAD sing 399 n n 
C5N C6N NAD sing 400 n y 
C5N H5N NAD sing 401 n n 
C6N H6N NAD sing 402 n n 
#
_atom_sites.entry_id                     5KMR 
_atom_sites.fract_transf_matrix[1][1]    0.013877 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000371 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007639 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD B 1 601 601 FAD FAD . 
F 2 FAD A 1 601 601 FAD FAD . 
G 3 NAD A 1 602 602 NAD NAD . 
H 2 FAD C 1 601 601 FAD FAD . 
I 3 NAD C 1 602 602 NAD NAD . 
J 2 FAD D 1 601 601 FAD FAD . 
K 3 NAD D 1 602 602 NAD NAD . 
L 4 HOH B 1 701 9 HOH HOH . 
L 4 HOH B 2 702 2 HOH HOH . 
L 4 HOH B 3 703 10 HOH HOH . 
M 4 HOH A 1 701 5 HOH HOH . 
M 4 HOH A 2 702 4 HOH HOH . 
M 4 HOH A 3 703 16 HOH HOH . 
M 4 HOH A 4 704 11 HOH HOH . 
M 4 HOH A 5 705 19 HOH HOH . 
M 4 HOH A 6 706 12 HOH HOH . 
M 4 HOH A 7 707 3 HOH HOH . 
M 4 HOH A 8 708 18 HOH HOH . 
N 4 HOH C 1 701 22 HOH HOH . 
N 4 HOH C 2 702 29 HOH HOH . 
N 4 HOH C 3 703 21 HOH HOH . 
O 4 HOH D 1 701 23 HOH HOH . 
O 4 HOH D 2 702 6 HOH HOH . 
O 4 HOH D 3 703 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . G 3 34.445 42.198 -6.138 1 62.53 ? PA NAD 602 A 1 
HETATM 2 O O1A NAD . . . G 3 35.302 43.457 -6.053 1 67.73 -1 O1A NAD 602 A 1 
HETATM 3 O O2A NAD . . . G 3 33.307 42.422 -7.099 1 63.66 ? O2A NAD 602 A 1 
HETATM 4 O O5B NAD . . . G 3 35.347 40.964 -6.667 1 64.14 ? O5B NAD 602 A 1 
HETATM 5 C C5B NAD . . . G 3 34.689 39.723 -6.886 1 64.99 ? C5B NAD 602 A 1 
HETATM 6 C C4B NAD . . . G 3 35.682 38.687 -7.303 1 65.32 ? C4B NAD 602 A 1 
HETATM 7 O O4B NAD . . . G 3 35.123 37.398 -7.014 1 65.13 ? O4B NAD 602 A 1 
HETATM 8 C C3B NAD . . . G 3 35.873 38.812 -8.615 1 66.22 ? C3B NAD 602 A 1 
HETATM 9 O O3B NAD . . . G 3 37.324 38.82 -8.916 1 66.61 ? O3B NAD 602 A 1 
HETATM 10 C C2B NAD . . . G 3 35.208 37.575 -9.254 1 66.7 ? C2B NAD 602 A 1 
HETATM 11 O O2B NAD . . . G 3 35.927 37.12 -10.259 1 67.86 ? O2B NAD 602 A 1 
HETATM 12 C C1B NAD . . . G 3 35.288 36.599 -8.028 1 66.67 ? C1B NAD 602 A 1 
HETATM 13 N N9A NAD . . . G 3 34.242 35.617 -8.089 1 66.82 ? N9A NAD 602 A 1 
HETATM 14 C C8A NAD . . . G 3 32.935 35.872 -8.297 1 67.74 ? C8A NAD 602 A 1 
HETATM 15 N N7A NAD . . . G 3 32.261 34.711 -8.285 1 68.05 ? N7A NAD 602 A 1 
HETATM 16 C C5A NAD . . . G 3 33.159 33.701 -8.066 1 67.13 ? C5A NAD 602 A 1 
HETATM 17 C C6A NAD . . . G 3 33.041 32.3 -7.956 1 67.15 ? C6A NAD 602 A 1 
HETATM 18 N N6A NAD . . . G 3 31.742 31.681 -8.084 1 67.47 ? N6A NAD 602 A 1 
HETATM 19 N N1A NAD . . . G 3 34.136 31.538 -7.732 1 67.89 ? N1A NAD 602 A 1 
HETATM 20 C C2A NAD . . . G 3 35.341 32.126 -7.615 1 69.73 ? C2A NAD 602 A 1 
HETATM 21 N N3A NAD . . . G 3 35.494 33.463 -7.716 1 67.33 ? N3A NAD 602 A 1 
HETATM 22 C C4A NAD . . . G 3 34.409 34.266 -7.942 1 66.62 ? C4A NAD 602 A 1 
HETATM 23 O O3 NAD . . . G 3 33.852 41.849 -4.689 1 62.81 ? O3 NAD 602 A 1 
HETATM 24 P PN NAD . . . G 3 34.258 42.632 -3.346 1 61.53 ? PN NAD 602 A 1 
HETATM 25 O O1N NAD . . . G 3 35.6 42.12 -2.853 1 61.87 -1 O1N NAD 602 A 1 
HETATM 26 O O2N NAD . . . G 3 33.187 42.405 -2.27 1 61.66 ? O2N NAD 602 A 1 
HETATM 27 O O5D NAD . . . G 3 34.386 44.218 -3.669 1 65.08 ? O5D NAD 602 A 1 
HETATM 28 C C5D NAD . . . G 3 33.325 45.107 -3.306 1 63.88 ? C5D NAD 602 A 1 
HETATM 29 C C4D NAD . . . G 3 33.723 46.455 -3.568 1 63.19 ? C4D NAD 602 A 1 
HETATM 30 O O4D NAD . . . G 3 34.501 47.021 -2.407 1 63.17 ? O4D NAD 602 A 1 
HETATM 31 C C3D NAD . . . G 3 34.68 46.548 -4.788 1 63.68 ? C3D NAD 602 A 1 
HETATM 32 O O3D NAD . . . G 3 34.168 47.614 -5.772 1 63.53 ? O3D NAD 602 A 1 
HETATM 33 C C2D NAD . . . G 3 35.778 46.889 -4.335 1 64.31 ? C2D NAD 602 A 1 
HETATM 34 O O2D NAD . . . G 3 36.467 47.804 -5.288 1 66.51 ? O2D NAD 602 A 1 
HETATM 35 C C1D NAD . . . G 3 35.458 47.655 -2.929 1 64.22 ? C1D NAD 602 A 1 
HETATM 36 N N1N NAD . . . G 3 36.613 47.61 -2.064 1 65.62 ? N1N NAD 602 A 1 
HETATM 37 C C2N NAD . . . G 3 37.556 48.567 -2.16 1 66.54 ? C2N NAD 602 A 1 
HETATM 38 C C3N NAD . . . G 3 38.683 48.536 -1.329 1 67.94 ? C3N NAD 602 A 1 
HETATM 39 C C7N NAD . . . G 3 39.73 49.61 -1.442 1 71.95 ? C7N NAD 602 A 1 
HETATM 40 O O7N NAD . . . G 3 39.505 50.613 -2.094 1 84.64 ? O7N NAD 602 A 1 
HETATM 41 N N7N NAD . . . G 3 41.019 49.448 -0.772 1 80.36 ? N7N NAD 602 A 1 
HETATM 42 C C4N NAD . . . G 3 38.825 47.501 -0.391 1 67.53 ? C4N NAD 602 A 1 
HETATM 43 C C5N NAD . . . G 3 37.845 46.527 -0.305 1 65.47 ? C5N NAD 602 A 1 
HETATM 44 C C6N NAD . . . G 3 36.732 46.606 -1.168 1 64.22 ? C6N NAD 602 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#