data_5KMR
#
_model_server_result.job_id            ncmN7Pr9yGGK1ei73TwSNg 
_model_server_result.datetime_utc      '2025-01-12 11:05:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kmr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":602}' 
#
_entry.id    5KMR 
#
_exptl.entry_id    5KMR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.53 
_cell.angle_gamma         90 
_cell.entry_id            5KMR 
_cell.length_a            72.061 
_cell.length_b            114.206 
_cell.length_c            130.957 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KMR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 328 n n 
PA O2A NAD sing 329 n n 
PA O5B NAD sing 330 n n 
PA O3 NAD sing 331 n n 
O2A HOA2 NAD sing 332 n n 
O5B C5B NAD sing 333 n n 
C5B C4B NAD sing 334 n n 
C5B H51A NAD sing 335 n n 
C5B H52A NAD sing 336 n n 
C4B O4B NAD sing 337 n n 
C4B C3B NAD sing 338 n n 
C4B H4B NAD sing 339 n n 
O4B C1B NAD sing 340 n n 
C3B O3B NAD sing 341 n n 
C3B C2B NAD sing 342 n n 
C3B H3B NAD sing 343 n n 
O3B HO3A NAD sing 344 n n 
C2B O2B NAD sing 345 n n 
C2B C1B NAD sing 346 n n 
C2B H2B NAD sing 347 n n 
O2B HO2A NAD sing 348 n n 
C1B N9A NAD sing 349 n n 
C1B H1B NAD sing 350 n n 
N9A C8A NAD sing 351 n y 
N9A C4A NAD sing 352 n y 
C8A N7A NAD doub 353 n y 
C8A H8A NAD sing 354 n n 
N7A C5A NAD sing 355 n y 
C5A C6A NAD sing 356 n y 
C5A C4A NAD doub 357 n y 
C6A N6A NAD sing 358 n n 
C6A N1A NAD doub 359 n y 
N6A H61A NAD sing 360 n n 
N6A H62A NAD sing 361 n n 
N1A C2A NAD sing 362 n y 
C2A N3A NAD doub 363 n y 
C2A H2A NAD sing 364 n n 
N3A C4A NAD sing 365 n y 
O3 PN NAD sing 366 n n 
PN O1N NAD doub 367 n n 
PN O2N NAD sing 368 n n 
PN O5D NAD sing 369 n n 
O5D C5D NAD sing 370 n n 
C5D C4D NAD sing 371 n n 
C5D H51N NAD sing 372 n n 
C5D H52N NAD sing 373 n n 
C4D O4D NAD sing 374 n n 
C4D C3D NAD sing 375 n n 
C4D H4D NAD sing 376 n n 
O4D C1D NAD sing 377 n n 
C3D O3D NAD sing 378 n n 
C3D C2D NAD sing 379 n n 
C3D H3D NAD sing 380 n n 
O3D HO3N NAD sing 381 n n 
C2D O2D NAD sing 382 n n 
C2D C1D NAD sing 383 n n 
C2D H2D NAD sing 384 n n 
O2D HO2N NAD sing 385 n n 
C1D N1N NAD sing 386 n n 
C1D H1D NAD sing 387 n n 
N1N C2N NAD sing 388 n y 
N1N C6N NAD doub 389 n y 
C2N C3N NAD doub 390 n y 
C2N H2N NAD sing 391 n n 
C3N C7N NAD sing 392 n n 
C3N C4N NAD sing 393 n y 
C7N O7N NAD doub 394 n n 
C7N N7N NAD sing 395 n n 
N7N H71N NAD sing 396 n n 
N7N H72N NAD sing 397 n n 
C4N C5N NAD doub 398 n y 
C4N H4N NAD sing 399 n n 
C5N C6N NAD sing 400 n y 
C5N H5N NAD sing 401 n n 
C6N H6N NAD sing 402 n n 
#
_atom_sites.entry_id                     5KMR 
_atom_sites.fract_transf_matrix[1][1]    0.013877 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000371 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007639 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD B 1 601 601 FAD FAD . 
F 2 FAD A 1 601 601 FAD FAD . 
G 3 NAD A 1 602 602 NAD NAD . 
H 2 FAD C 1 601 601 FAD FAD . 
I 3 NAD C 1 602 602 NAD NAD . 
J 2 FAD D 1 601 601 FAD FAD . 
K 3 NAD D 1 602 602 NAD NAD . 
L 4 HOH B 1 701 9 HOH HOH . 
L 4 HOH B 2 702 2 HOH HOH . 
L 4 HOH B 3 703 10 HOH HOH . 
M 4 HOH A 1 701 5 HOH HOH . 
M 4 HOH A 2 702 4 HOH HOH . 
M 4 HOH A 3 703 16 HOH HOH . 
M 4 HOH A 4 704 11 HOH HOH . 
M 4 HOH A 5 705 19 HOH HOH . 
M 4 HOH A 6 706 12 HOH HOH . 
M 4 HOH A 7 707 3 HOH HOH . 
M 4 HOH A 8 708 18 HOH HOH . 
N 4 HOH C 1 701 22 HOH HOH . 
N 4 HOH C 2 702 29 HOH HOH . 
N 4 HOH C 3 703 21 HOH HOH . 
O 4 HOH D 1 701 23 HOH HOH . 
O 4 HOH D 2 702 6 HOH HOH . 
O 4 HOH D 3 703 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . I 3 21.609 33.026 -35.343 1 82.06 ? PA NAD 602 C 1 
HETATM 2 O O1A NAD . . . I 3 22.366 32.443 -34.154 1 83.57 -1 O1A NAD 602 C 1 
HETATM 3 O O2A NAD . . . I 3 21.025 34.362 -34.963 1 82.1 ? O2A NAD 602 C 1 
HETATM 4 O O5B NAD . . . I 3 22.621 33.227 -36.591 1 82.59 ? O5B NAD 602 C 1 
HETATM 5 C C5B NAD . . . I 3 22.258 34.188 -37.573 1 82.8 ? C5B NAD 602 C 1 
HETATM 6 C C4B NAD . . . I 3 23.294 34.242 -38.648 1 83.12 ? C4B NAD 602 C 1 
HETATM 7 O O4B NAD . . . I 3 22.624 34.478 -39.894 1 82.51 ? O4B NAD 602 C 1 
HETATM 8 C C3B NAD . . . I 3 24.098 35.268 -38.377 1 85.94 ? C3B NAD 602 C 1 
HETATM 9 O O3B NAD . . . I 3 25.484 34.783 -38.177 1 82.87 ? O3B NAD 602 C 1 
HETATM 10 C C2B NAD . . . I 3 24.043 36.2 -39.607 1 91.36 ? C2B NAD 602 C 1 
HETATM 11 O O2B NAD . . . I 3 25.254 36.532 -40.002 1 84.26 ? O2B NAD 602 C 1 
HETATM 12 C C1B NAD . . . I 3 23.349 35.249 -40.647 1 86.78 ? C1B NAD 602 C 1 
HETATM 13 N N9A NAD . . . I 3 22.514 36.022 -41.518 1 82.67 ? N9A NAD 602 C 1 
HETATM 14 C C8A NAD . . . I 3 21.546 36.867 -41.114 1 82.53 ? C8A NAD 602 C 1 
HETATM 15 N N7A NAD . . . I 3 20.974 37.416 -42.196 1 83.11 ? N7A NAD 602 C 1 
HETATM 16 C C5A NAD . . . I 3 21.594 36.911 -43.306 1 82.56 ? C5A NAD 602 C 1 
HETATM 17 C C6A NAD . . . I 3 21.423 37.116 -44.688 1 82.49 ? C6A NAD 602 C 1 
HETATM 18 N N6A NAD . . . I 3 20.408 38.035 -45.149 1 89.85 ? N6A NAD 602 C 1 
HETATM 19 N N1A NAD . . . I 3 22.204 36.459 -45.578 1 81.33 ? N1A NAD 602 C 1 
HETATM 20 C C2A NAD . . . I 3 23.146 35.607 -45.131 1 81.16 ? C2A NAD 602 C 1 
HETATM 21 N N3A NAD . . . I 3 23.338 35.385 -43.813 1 81.97 ? N3A NAD 602 C 1 
HETATM 22 C C4A NAD . . . I 3 22.566 36.032 -42.886 1 82.01 ? C4A NAD 602 C 1 
HETATM 23 O O3 NAD . . . I 3 20.424 32.032 -35.772 1 89.47 ? O3 NAD 602 C 1 
HETATM 24 P PN NAD . . . I 3 20.37 30.476 -35.378 1 81.63 ? PN NAD 602 C 1 
HETATM 25 O O1N NAD . . . I 3 21.52 29.745 -36.05 1 79.07 -1 O1N NAD 602 C 1 
HETATM 26 O O2N NAD . . . I 3 19.037 29.875 -35.843 1 80.88 ? O2N NAD 602 C 1 
HETATM 27 O O5D NAD . . . I 3 20.495 30.323 -33.765 1 86.47 ? O5D NAD 602 C 1 
HETATM 28 C C5D NAD . . . I 3 19.364 30.636 -32.945 1 84.09 ? C5D NAD 602 C 1 
HETATM 29 C C4D NAD . . . I 3 19.767 30.751 -31.578 1 88.46 ? C4D NAD 602 C 1 
HETATM 30 O O4D NAD . . . I 3 19.676 29.416 -30.887 1 91.05 ? O4D NAD 602 C 1 
HETATM 31 C C3D NAD . . . I 3 21.249 31.197 -31.446 1 90.77 ? C3D NAD 602 C 1 
HETATM 32 O O3D NAD . . . I 3 21.353 32.401 -30.494 1 88.08 ? O3D NAD 602 C 1 
HETATM 33 C C2D NAD . . . I 3 21.867 30.236 -30.975 1 91.21 ? C2D NAD 602 C 1 
HETATM 34 O O2D NAD . . . I 3 22.857 30.705 -29.965 1 88.91 ? O2D NAD 602 C 1 
HETATM 35 C C1D NAD . . . I 3 20.765 29.257 -30.271 1 88.52 ? C1D NAD 602 C 1 
HETATM 36 N N1N NAD . . . I 3 21.197 27.89 -30.419 1 88.32 ? N1N NAD 602 C 1 
HETATM 37 C C2N NAD . . . I 3 21.865 27.285 -29.418 1 89.97 ? C2N NAD 602 C 1 
HETATM 38 C C3N NAD . . . I 3 22.289 25.959 -29.56 1 97.23 ? C3N NAD 602 C 1 
HETATM 39 C C7N NAD . . . I 3 23.033 25.273 -28.445 1 101.28 ? C7N NAD 602 C 1 
HETATM 40 O O7N NAD . . . I 3 23.613 24.223 -28.653 1 95.3 ? O7N NAD 602 C 1 
HETATM 41 N N7N NAD . . . I 3 23.051 25.858 -27.107 1 105.1 ? N7N NAD 602 C 1 
HETATM 42 C C4N NAD . . . I 3 22.007 25.271 -30.748 1 92.98 ? C4N NAD 602 C 1 
HETATM 43 C C5N NAD . . . I 3 21.326 25.909 -31.768 1 91.68 ? C5N NAD 602 C 1 
HETATM 44 C C6N NAD . . . I 3 20.923 27.243 -31.571 1 87.15 ? C6N NAD 602 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#