data_5KMU # _model_server_result.job_id XAG-SEycD2YWjp0lOJeVbQ _model_server_result.datetime_utc '2024-11-05 23:32:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kmu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 5KMU # _exptl.entry_id 5KMU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.52 _cell.angle_gamma 90 _cell.entry_id 5KMU _cell.length_a 42.743 _cell.length_b 42.212 _cell.length_c 68.035 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KMU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 5KMU _atom_sites.fract_transf_matrix[1][1] 0.023396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 301 1 PO4 PO4 . C 2 PO4 A 1 302 2 PO4 PO4 . D 2 PO4 A 1 303 3 PO4 PO4 . E 2 PO4 A 1 304 5 PO4 PO4 . F 3 CL A 1 305 1 CL CL . G 4 PEG A 1 306 500 PEG PEG . H 4 PEG A 1 307 501 PEG PEG . I 4 PEG A 1 308 503 PEG PEG . J 5 HOH A 1 401 1 HOH HOH . J 5 HOH A 2 402 68 HOH HOH . J 5 HOH A 3 403 64 HOH HOH . J 5 HOH A 4 404 174 HOH HOH . J 5 HOH A 5 405 52 HOH HOH . J 5 HOH A 6 406 35 HOH HOH . J 5 HOH A 7 407 175 HOH HOH . J 5 HOH A 8 408 56 HOH HOH . J 5 HOH A 9 409 22 HOH HOH . J 5 HOH A 10 410 55 HOH HOH . J 5 HOH A 11 411 100 HOH HOH . J 5 HOH A 12 412 3 HOH HOH . J 5 HOH A 13 413 8 HOH HOH . J 5 HOH A 14 414 72 HOH HOH . J 5 HOH A 15 415 79 HOH HOH . J 5 HOH A 16 416 108 HOH HOH . J 5 HOH A 17 417 32 HOH HOH . J 5 HOH A 18 418 20 HOH HOH . J 5 HOH A 19 419 92 HOH HOH . J 5 HOH A 20 420 14 HOH HOH . J 5 HOH A 21 421 34 HOH HOH . J 5 HOH A 22 422 28 HOH HOH . J 5 HOH A 23 423 103 HOH HOH . J 5 HOH A 24 424 132 HOH HOH . J 5 HOH A 25 425 6 HOH HOH . J 5 HOH A 26 426 51 HOH HOH . J 5 HOH A 27 427 26 HOH HOH . J 5 HOH A 28 428 42 HOH HOH . J 5 HOH A 29 429 33 HOH HOH . J 5 HOH A 30 430 157 HOH HOH . J 5 HOH A 31 431 59 HOH HOH . J 5 HOH A 32 432 88 HOH HOH . J 5 HOH A 33 433 121 HOH HOH . J 5 HOH A 34 434 115 HOH HOH . J 5 HOH A 35 435 38 HOH HOH . J 5 HOH A 36 436 13 HOH HOH . J 5 HOH A 37 437 142 HOH HOH . J 5 HOH A 38 438 122 HOH HOH . J 5 HOH A 39 439 29 HOH HOH . J 5 HOH A 40 440 61 HOH HOH . J 5 HOH A 41 441 130 HOH HOH . J 5 HOH A 42 442 73 HOH HOH . J 5 HOH A 43 443 10 HOH HOH . J 5 HOH A 44 444 5 HOH HOH . J 5 HOH A 45 445 30 HOH HOH . J 5 HOH A 46 446 24 HOH HOH . J 5 HOH A 47 447 136 HOH HOH . J 5 HOH A 48 448 4 HOH HOH . J 5 HOH A 49 449 91 HOH HOH . J 5 HOH A 50 450 181 HOH HOH . J 5 HOH A 51 451 106 HOH HOH . J 5 HOH A 52 452 39 HOH HOH . J 5 HOH A 53 453 85 HOH HOH . J 5 HOH A 54 454 96 HOH HOH . J 5 HOH A 55 455 23 HOH HOH . J 5 HOH A 56 456 184 HOH HOH . J 5 HOH A 57 457 98 HOH HOH . J 5 HOH A 58 458 76 HOH HOH . J 5 HOH A 59 459 119 HOH HOH . J 5 HOH A 60 460 2 HOH HOH . J 5 HOH A 61 461 21 HOH HOH . J 5 HOH A 62 462 54 HOH HOH . J 5 HOH A 63 463 46 HOH HOH . J 5 HOH A 64 464 105 HOH HOH . J 5 HOH A 65 465 129 HOH HOH . J 5 HOH A 66 466 57 HOH HOH . J 5 HOH A 67 467 27 HOH HOH . J 5 HOH A 68 468 17 HOH HOH . J 5 HOH A 69 469 169 HOH HOH . J 5 HOH A 70 470 65 HOH HOH . J 5 HOH A 71 471 180 HOH HOH . J 5 HOH A 72 472 155 HOH HOH . J 5 HOH A 73 473 83 HOH HOH . J 5 HOH A 74 474 11 HOH HOH . J 5 HOH A 75 475 110 HOH HOH . J 5 HOH A 76 476 93 HOH HOH . J 5 HOH A 77 477 82 HOH HOH . J 5 HOH A 78 478 137 HOH HOH . J 5 HOH A 79 479 19 HOH HOH . J 5 HOH A 80 480 69 HOH HOH . J 5 HOH A 81 481 12 HOH HOH . J 5 HOH A 82 482 127 HOH HOH . J 5 HOH A 83 483 77 HOH HOH . J 5 HOH A 84 484 9 HOH HOH . J 5 HOH A 85 485 62 HOH HOH . J 5 HOH A 86 486 25 HOH HOH . J 5 HOH A 87 487 125 HOH HOH . J 5 HOH A 88 488 168 HOH HOH . J 5 HOH A 89 489 71 HOH HOH . J 5 HOH A 90 490 15 HOH HOH . J 5 HOH A 91 491 134 HOH HOH . J 5 HOH A 92 492 31 HOH HOH . J 5 HOH A 93 493 50 HOH HOH . J 5 HOH A 94 494 104 HOH HOH . J 5 HOH A 95 495 182 HOH HOH . J 5 HOH A 96 496 16 HOH HOH . J 5 HOH A 97 497 81 HOH HOH . J 5 HOH A 98 498 140 HOH HOH . J 5 HOH A 99 499 164 HOH HOH . J 5 HOH A 100 500 148 HOH HOH . J 5 HOH A 101 501 133 HOH HOH . J 5 HOH A 102 502 67 HOH HOH . J 5 HOH A 103 503 70 HOH HOH . J 5 HOH A 104 504 53 HOH HOH . J 5 HOH A 105 505 78 HOH HOH . J 5 HOH A 106 506 48 HOH HOH . J 5 HOH A 107 507 40 HOH HOH . J 5 HOH A 108 508 7 HOH HOH . J 5 HOH A 109 509 139 HOH HOH . J 5 HOH A 110 510 149 HOH HOH . J 5 HOH A 111 511 75 HOH HOH . J 5 HOH A 112 512 176 HOH HOH . J 5 HOH A 113 513 183 HOH HOH . J 5 HOH A 114 514 154 HOH HOH . J 5 HOH A 115 515 112 HOH HOH . J 5 HOH A 116 516 41 HOH HOH . J 5 HOH A 117 517 37 HOH HOH . J 5 HOH A 118 518 113 HOH HOH . J 5 HOH A 119 519 162 HOH HOH . J 5 HOH A 120 520 87 HOH HOH . J 5 HOH A 121 521 150 HOH HOH . J 5 HOH A 122 522 36 HOH HOH . J 5 HOH A 123 523 144 HOH HOH . J 5 HOH A 124 524 146 HOH HOH . J 5 HOH A 125 525 163 HOH HOH . J 5 HOH A 126 526 99 HOH HOH . J 5 HOH A 127 527 44 HOH HOH . J 5 HOH A 128 528 128 HOH HOH . J 5 HOH A 129 529 179 HOH HOH . J 5 HOH A 130 530 111 HOH HOH . J 5 HOH A 131 531 74 HOH HOH . J 5 HOH A 132 532 90 HOH HOH . J 5 HOH A 133 533 97 HOH HOH . J 5 HOH A 134 534 109 HOH HOH . J 5 HOH A 135 535 147 HOH HOH . J 5 HOH A 136 536 166 HOH HOH . J 5 HOH A 137 537 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . H 4 13.44 17.258 -27.816 1 43.67 ? C1 PEG 307 A 1 HETATM 2 O O1 PEG . . . H 4 12.358 16.764 -28.615 1 42.86 ? O1 PEG 307 A 1 HETATM 3 C C2 PEG . . . H 4 14.719 16.503 -28.16 1 43.64 ? C2 PEG 307 A 1 HETATM 4 O O2 PEG . . . H 4 15.167 15.762 -27.027 1 43.78 ? O2 PEG 307 A 1 HETATM 5 C C3 PEG . . . H 4 15.345 14.366 -27.274 1 43.9 ? C3 PEG 307 A 1 HETATM 6 C C4 PEG . . . H 4 15.721 13.663 -25.971 1 44.04 ? C4 PEG 307 A 1 HETATM 7 O O4 PEG . . . H 4 14.885 12.518 -25.759 1 44.13 ? O4 PEG 307 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #