data_5KN7 # _model_server_result.job_id QPaMIg5WwZLLZ0wAAYDMVA _model_server_result.datetime_utc '2024-12-21 14:26:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 5KN7 # _exptl.entry_id 5KN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KN7 _cell.length_a 58.77 _cell.length_b 145.33 _cell.length_c 87.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 61 B ALA 55 1_555 E NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 A OE2 GLU 114 B GLU 108 1_555 E NA NA . B NA 404 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc3 A O GLU 133 B GLU 127 1_555 G NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc4 A OE1 GLU 133 B GLU 127 1_555 G NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 A OD1 ASN 136 B ASN 130 1_555 G NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc6 A OG1 THR 260 B THR 254 1_555 F NA NA . B NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc7 A OH TYR 277 B TYR 271 1_555 E NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KN7 _atom_sites.fract_transf_matrix[1][1] 0.017016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011467 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 B 1 401 3 SO4 SO4 . C 2 SO4 B 1 402 4 SO4 SO4 . D 2 SO4 B 1 403 6 SO4 SO4 . E 3 NA B 1 404 2 NA NA . F 3 NA B 1 405 3 NA NA . G 3 NA B 1 406 4 NA NA . H 4 GOL B 1 407 1 GOL GOL . I 4 GOL B 1 408 3 GOL GOL . J 4 GOL B 1 409 4 GOL GOL . K 4 GOL B 1 410 12 GOL GOL . L 4 GOL B 1 411 13 GOL GOL . M 4 GOL B 1 412 14 GOL GOL . N 4 GOL B 1 413 15 GOL GOL . O 4 GOL B 1 414 16 GOL GOL . P 5 LMT B 1 415 1 LMT LMT . Q 6 PO4 B 1 416 2 PO4 PO4 . R 7 HOH B 1 501 112 HOH HOH . R 7 HOH B 2 502 179 HOH HOH . R 7 HOH B 3 503 76 HOH HOH . R 7 HOH B 4 504 67 HOH HOH . R 7 HOH B 5 505 111 HOH HOH . R 7 HOH B 6 506 180 HOH HOH . R 7 HOH B 7 507 113 HOH HOH . R 7 HOH B 8 508 109 HOH HOH . R 7 HOH B 9 509 94 HOH HOH . R 7 HOH B 10 510 39 HOH HOH . R 7 HOH B 11 511 135 HOH HOH . R 7 HOH B 12 512 69 HOH HOH . R 7 HOH B 13 513 73 HOH HOH . R 7 HOH B 14 514 175 HOH HOH . R 7 HOH B 15 515 54 HOH HOH . R 7 HOH B 16 516 12 HOH HOH . R 7 HOH B 17 517 108 HOH HOH . R 7 HOH B 18 518 26 HOH HOH . R 7 HOH B 19 519 121 HOH HOH . R 7 HOH B 20 520 123 HOH HOH . R 7 HOH B 21 521 52 HOH HOH . R 7 HOH B 22 522 66 HOH HOH . R 7 HOH B 23 523 115 HOH HOH . R 7 HOH B 24 524 38 HOH HOH . R 7 HOH B 25 525 189 HOH HOH . R 7 HOH B 26 526 85 HOH HOH . R 7 HOH B 27 527 74 HOH HOH . R 7 HOH B 28 528 95 HOH HOH . R 7 HOH B 29 529 101 HOH HOH . R 7 HOH B 30 530 49 HOH HOH . R 7 HOH B 31 531 46 HOH HOH . R 7 HOH B 32 532 63 HOH HOH . R 7 HOH B 33 533 15 HOH HOH . R 7 HOH B 34 534 9 HOH HOH . R 7 HOH B 35 535 166 HOH HOH . R 7 HOH B 36 536 165 HOH HOH . R 7 HOH B 37 537 190 HOH HOH . R 7 HOH B 38 538 17 HOH HOH . R 7 HOH B 39 539 35 HOH HOH . R 7 HOH B 40 540 164 HOH HOH . R 7 HOH B 41 541 176 HOH HOH . R 7 HOH B 42 542 97 HOH HOH . R 7 HOH B 43 543 37 HOH HOH . R 7 HOH B 44 544 100 HOH HOH . R 7 HOH B 45 545 79 HOH HOH . R 7 HOH B 46 546 10 HOH HOH . R 7 HOH B 47 547 11 HOH HOH . R 7 HOH B 48 548 43 HOH HOH . R 7 HOH B 49 549 75 HOH HOH . R 7 HOH B 50 550 78 HOH HOH . R 7 HOH B 51 551 174 HOH HOH . R 7 HOH B 52 552 55 HOH HOH . R 7 HOH B 53 553 106 HOH HOH . R 7 HOH B 54 554 184 HOH HOH . R 7 HOH B 55 555 107 HOH HOH . R 7 HOH B 56 556 88 HOH HOH . R 7 HOH B 57 557 134 HOH HOH . R 7 HOH B 58 558 13 HOH HOH . R 7 HOH B 59 559 110 HOH HOH . R 7 HOH B 60 560 8 HOH HOH . R 7 HOH B 61 561 24 HOH HOH . R 7 HOH B 62 562 186 HOH HOH . R 7 HOH B 63 563 168 HOH HOH . R 7 HOH B 64 564 20 HOH HOH . R 7 HOH B 65 565 7 HOH HOH . R 7 HOH B 66 566 81 HOH HOH . R 7 HOH B 67 567 163 HOH HOH . R 7 HOH B 68 568 45 HOH HOH . R 7 HOH B 69 569 16 HOH HOH . R 7 HOH B 70 570 98 HOH HOH . R 7 HOH B 71 571 22 HOH HOH . R 7 HOH B 72 572 178 HOH HOH . R 7 HOH B 73 573 114 HOH HOH . R 7 HOH B 74 574 127 HOH HOH . R 7 HOH B 75 575 6 HOH HOH . R 7 HOH B 76 576 21 HOH HOH . R 7 HOH B 77 577 2 HOH HOH . R 7 HOH B 78 578 1 HOH HOH . R 7 HOH B 79 579 138 HOH HOH . R 7 HOH B 80 580 124 HOH HOH . R 7 HOH B 81 581 51 HOH HOH . R 7 HOH B 82 582 50 HOH HOH . R 7 HOH B 83 583 181 HOH HOH . R 7 HOH B 84 584 172 HOH HOH . R 7 HOH B 85 585 42 HOH HOH . R 7 HOH B 86 586 4 HOH HOH . R 7 HOH B 87 587 183 HOH HOH . R 7 HOH B 88 588 187 HOH HOH . R 7 HOH B 89 589 182 HOH HOH . R 7 HOH B 90 590 82 HOH HOH . R 7 HOH B 91 591 91 HOH HOH . R 7 HOH B 92 592 162 HOH HOH . R 7 HOH B 93 593 156 HOH HOH . R 7 HOH B 94 594 96 HOH HOH . R 7 HOH B 95 595 137 HOH HOH . R 7 HOH B 96 596 57 HOH HOH . R 7 HOH B 97 597 23 HOH HOH . R 7 HOH B 98 598 36 HOH HOH . R 7 HOH B 99 599 84 HOH HOH . R 7 HOH B 100 600 32 HOH HOH . R 7 HOH B 101 601 102 HOH HOH . R 7 HOH B 102 602 3 HOH HOH . R 7 HOH B 103 603 25 HOH HOH . R 7 HOH B 104 604 44 HOH HOH . R 7 HOH B 105 605 90 HOH HOH . R 7 HOH B 106 606 105 HOH HOH . R 7 HOH B 107 607 188 HOH HOH . R 7 HOH B 108 608 191 HOH HOH . R 7 HOH B 109 609 56 HOH HOH . R 7 HOH B 110 610 185 HOH HOH . R 7 HOH B 111 611 71 HOH HOH . R 7 HOH B 112 612 119 HOH HOH . R 7 HOH B 113 613 173 HOH HOH . R 7 HOH B 114 614 86 HOH HOH . R 7 HOH B 115 615 126 HOH HOH . R 7 HOH B 116 616 155 HOH HOH . R 7 HOH B 117 617 120 HOH HOH . R 7 HOH B 118 618 53 HOH HOH . R 7 HOH B 119 619 125 HOH HOH . R 7 HOH B 120 620 142 HOH HOH . R 7 HOH B 121 621 160 HOH HOH . R 7 HOH B 122 622 128 HOH HOH . R 7 HOH B 123 623 68 HOH HOH . R 7 HOH B 124 624 122 HOH HOH . R 7 HOH B 125 625 117 HOH HOH . R 7 HOH B 126 626 150 HOH HOH . R 7 HOH B 127 627 171 HOH HOH . R 7 HOH B 128 628 19 HOH HOH . R 7 HOH B 129 629 169 HOH HOH . R 7 HOH B 130 630 14 HOH HOH . R 7 HOH B 131 631 170 HOH HOH . R 7 HOH B 132 632 116 HOH HOH . R 7 HOH B 133 633 89 HOH HOH . R 7 HOH B 134 634 152 HOH HOH . R 7 HOH B 135 635 158 HOH HOH . R 7 HOH B 136 636 154 HOH HOH . R 7 HOH B 137 637 83 HOH HOH . R 7 HOH B 138 638 151 HOH HOH . R 7 HOH B 139 639 140 HOH HOH . R 7 HOH B 140 640 148 HOH HOH . R 7 HOH B 141 641 149 HOH HOH . R 7 HOH B 142 642 161 HOH HOH . R 7 HOH B 143 643 157 HOH HOH . R 7 HOH B 144 644 159 HOH HOH . R 7 HOH B 145 645 153 HOH HOH . R 7 HOH B 146 646 141 HOH HOH . R 7 HOH B 147 647 143 HOH HOH . R 7 HOH B 148 648 147 HOH HOH . R 7 HOH B 149 649 144 HOH HOH . R 7 HOH B 150 650 145 HOH HOH . R 7 HOH B 151 651 146 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -22.988 _atom_site.Cartn_y -19.538 _atom_site.Cartn_z 7.171 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 406 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #