data_5KNC
#
_model_server_result.job_id            OCOiUK2W07YiMabHp8Q_wQ 
_model_server_result.datetime_utc      '2024-11-10 01:31:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5knc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":501}' 
#
_entry.id    5KNC 
#
_exptl.entry_id    5KNC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KNC 
_cell.length_a            121.68 
_cell.length_b            126.49 
_cell.length_c            225.26 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KNC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 L N N 
? 8 M N N 
? 8 N N N 
? 8 O N N 
? 8 P N N 
? 8 Q N N 
? 8 T N N 
? 8 U N N 
? 8 V N N 
? 8 W N N 
? 8 X N N 
? 8 AA N N 
? 8 BA N N 
? 8 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 246 A THR 239 1_555 I MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc2 I MG MG . A MG 701 1_555 J O4 SO4 . A SO4 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc3 I MG MG . A MG 701 1_555 K O1B ADP . A ADP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
metalc ? metalc4 I MG MG . A MG 701 1_555 K O3B ADP . A ADP 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc5 I MG MG . A MG 701 1_555 DA O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc6 I MG MG . A MG 701 1_555 DA O HOH . A HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc7 B OG1 THR 246 B THR 239 1_555 R MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? 
metalc ? metalc8 R MG MG . B MG 601 1_555 S O3B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? 
metalc ? metalc9 R MG MG . B MG 601 1_555 S O2B ADP . B ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? 
metalc ? metalc10 R MG MG . B MG 601 1_555 EA O HOH . B HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc11 R MG MG . B MG 601 1_555 EA O HOH . B HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc12 R MG MG . B MG 601 1_555 EA O HOH . B HOH 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? 
metalc ? metalc13 R MG MG . B MG 601 1_555 EA O HOH . B HOH 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc14 C OG1 THR 246 C THR 239 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc15 Y MG MG . C MG 601 1_555 Z O1B ADP . C ADP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc16 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc17 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc18 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 173 n n 
C1 C2 GOL sing 174 n n 
C1 H11 GOL sing 175 n n 
C1 H12 GOL sing 176 n n 
O1 HO1 GOL sing 177 n n 
C2 O2 GOL sing 178 n n 
C2 C3 GOL sing 179 n n 
C2 H2 GOL sing 180 n n 
O2 HO2 GOL sing 181 n n 
C3 O3 GOL sing 182 n n 
C3 H31 GOL sing 183 n n 
C3 H32 GOL sing 184 n n 
O3 HO3 GOL sing 185 n n 
#
_atom_sites.entry_id                     5KNC 
_atom_sites.fract_transf_matrix[1][1]    0.008218 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007906 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 MG A 1 701 701 MG MG . 
J 6 SO4 A 1 702 702 SO4 SO4 . 
K 7 ADP A 1 703 703 ADP ADP . 
L 8 GOL A 1 704 704 GOL GOL . 
M 8 GOL A 1 705 705 GOL GOL . 
N 8 GOL A 1 706 706 GOL GOL . 
O 8 GOL A 1 707 707 GOL GOL . 
P 8 GOL A 1 708 708 GOL GOL . 
Q 8 GOL A 1 709 709 GOL GOL . 
R 5 MG B 1 601 601 MG MG . 
S 7 ADP B 1 602 602 ADP ADP . 
T 8 GOL B 1 603 603 GOL GOL . 
U 8 GOL B 1 604 604 GOL GOL . 
V 8 GOL B 1 605 605 GOL GOL . 
W 8 GOL B 1 606 606 GOL GOL . 
X 8 GOL B 1 607 607 GOL GOL . 
Y 5 MG C 1 601 601 MG MG . 
Z 7 ADP C 1 602 602 ADP ADP . 
AA 8 GOL D 1 501 501 GOL GOL . 
BA 8 GOL D 1 502 502 GOL GOL . 
CA 8 GOL F 1 501 501 GOL GOL . 
DA 9 HOH A 1 801 801 HOH HOH . 
DA 9 HOH A 2 802 802 HOH HOH . 
DA 9 HOH A 3 803 803 HOH HOH . 
DA 9 HOH A 4 804 804 HOH HOH . 
DA 9 HOH A 5 805 805 HOH HOH . 
DA 9 HOH A 6 806 806 HOH HOH . 
DA 9 HOH A 7 807 807 HOH HOH . 
DA 9 HOH A 8 808 808 HOH HOH . 
DA 9 HOH A 9 809 809 HOH HOH . 
DA 9 HOH A 10 810 810 HOH HOH . 
DA 9 HOH A 11 811 811 HOH HOH . 
DA 9 HOH A 12 812 812 HOH HOH . 
EA 9 HOH B 1 701 701 HOH HOH . 
EA 9 HOH B 2 702 702 HOH HOH . 
EA 9 HOH B 3 703 703 HOH HOH . 
EA 9 HOH B 4 704 704 HOH HOH . 
EA 9 HOH B 5 705 705 HOH HOH . 
EA 9 HOH B 6 706 706 HOH HOH . 
EA 9 HOH B 7 707 707 HOH HOH . 
EA 9 HOH B 8 708 708 HOH HOH . 
EA 9 HOH B 9 709 709 HOH HOH . 
EA 9 HOH B 10 710 710 HOH HOH . 
EA 9 HOH B 11 711 711 HOH HOH . 
EA 9 HOH B 12 712 712 HOH HOH . 
EA 9 HOH B 13 713 713 HOH HOH . 
EA 9 HOH B 14 714 714 HOH HOH . 
EA 9 HOH B 15 715 715 HOH HOH . 
EA 9 HOH B 16 716 716 HOH HOH . 
EA 9 HOH B 17 717 717 HOH HOH . 
EA 9 HOH B 18 718 718 HOH HOH . 
EA 9 HOH B 19 719 719 HOH HOH . 
FA 9 HOH C 1 701 701 HOH HOH . 
FA 9 HOH C 2 702 702 HOH HOH . 
FA 9 HOH C 3 703 703 HOH HOH . 
FA 9 HOH C 4 704 704 HOH HOH . 
FA 9 HOH C 5 705 705 HOH HOH . 
FA 9 HOH C 6 706 706 HOH HOH . 
FA 9 HOH C 7 707 707 HOH HOH . 
FA 9 HOH C 8 708 708 HOH HOH . 
FA 9 HOH C 9 709 709 HOH HOH . 
FA 9 HOH C 10 710 710 HOH HOH . 
FA 9 HOH C 11 711 711 HOH HOH . 
FA 9 HOH C 12 712 712 HOH HOH . 
FA 9 HOH C 13 713 713 HOH HOH . 
FA 9 HOH C 14 714 714 HOH HOH . 
FA 9 HOH C 15 715 715 HOH HOH . 
GA 9 HOH D 1 601 601 HOH HOH . 
GA 9 HOH D 2 602 602 HOH HOH . 
GA 9 HOH D 3 603 603 HOH HOH . 
GA 9 HOH D 4 604 604 HOH HOH . 
GA 9 HOH D 5 605 605 HOH HOH . 
GA 9 HOH D 6 606 606 HOH HOH . 
HA 9 HOH E 1 501 501 HOH HOH . 
HA 9 HOH E 2 502 502 HOH HOH . 
HA 9 HOH E 3 503 503 HOH HOH . 
HA 9 HOH E 4 504 504 HOH HOH . 
HA 9 HOH E 5 505 505 HOH HOH . 
HA 9 HOH E 6 506 506 HOH HOH . 
HA 9 HOH E 7 507 507 HOH HOH . 
HA 9 HOH E 8 508 508 HOH HOH . 
IA 9 HOH F 1 601 601 HOH HOH . 
IA 9 HOH F 2 602 602 HOH HOH . 
IA 9 HOH F 3 603 603 HOH HOH . 
IA 9 HOH F 4 604 604 HOH HOH . 
IA 9 HOH F 5 605 605 HOH HOH . 
IA 9 HOH F 6 606 606 HOH HOH . 
IA 9 HOH F 7 607 607 HOH HOH . 
JA 9 HOH G 1 301 301 HOH HOH . 
JA 9 HOH G 2 302 302 HOH HOH . 
JA 9 HOH G 3 303 303 HOH HOH . 
JA 9 HOH G 4 304 304 HOH HOH . 
KA 9 HOH H 1 201 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . CA 8 21.285 4.198 -33.372 1 97.44 ? C1 GOL 501 F 1 
HETATM 2 O O1 GOL . . . CA 8 21.075 4.692 -34.677 1 97.93 ? O1 GOL 501 F 1 
HETATM 3 C C2 GOL . . . CA 8 20.32 3.047 -33.11 1 96.62 ? C2 GOL 501 F 1 
HETATM 4 O O2 GOL . . . CA 8 20.844 2.231 -32.083 1 96.57 ? O2 GOL 501 F 1 
HETATM 5 C C3 GOL . . . CA 8 18.977 3.618 -32.665 1 95.85 ? C3 GOL 501 F 1 
HETATM 6 O O3 GOL . . . CA 8 18.015 2.588 -32.642 1 95.41 ? O3 GOL 501 F 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#