data_5KNH # _model_server_result.job_id yvCgdPht9p81pSbgp25lyA _model_server_result.datetime_utc '2024-10-19 11:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5knh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 5KNH # _exptl.entry_id 5KNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KNH _cell.length_a 52.41 _cell.length_b 78.49 _cell.length_c 119.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 28 I CYS 29 1_555 B SG CYS 56 I CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 B SG CYS 44 I CYS 45 1_555 B SG CYS 70 I CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5KNH _atom_sites.fract_transf_matrix[1][1] 0.01908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT D 1 1001 1001 ACT ACT . D 4 HOH D 1 1101 109 HOH HOH . D 4 HOH D 2 1102 35 HOH HOH . D 4 HOH D 3 1103 138 HOH HOH . D 4 HOH D 4 1104 14 HOH HOH . D 4 HOH D 5 1105 50 HOH HOH . D 4 HOH D 6 1106 119 HOH HOH . D 4 HOH D 7 1107 79 HOH HOH . D 4 HOH D 8 1108 9 HOH HOH . D 4 HOH D 9 1109 161 HOH HOH . D 4 HOH D 10 1110 46 HOH HOH . D 4 HOH D 11 1111 2 HOH HOH . D 4 HOH D 12 1112 124 HOH HOH . D 4 HOH D 13 1113 26 HOH HOH . D 4 HOH D 14 1114 88 HOH HOH . D 4 HOH D 15 1115 192 HOH HOH . D 4 HOH D 16 1116 10 HOH HOH . D 4 HOH D 17 1117 1 HOH HOH . D 4 HOH D 18 1118 54 HOH HOH . D 4 HOH D 19 1119 30 HOH HOH . D 4 HOH D 20 1120 58 HOH HOH . D 4 HOH D 21 1121 86 HOH HOH . D 4 HOH D 22 1122 175 HOH HOH . D 4 HOH D 23 1123 140 HOH HOH . D 4 HOH D 24 1124 64 HOH HOH . D 4 HOH D 25 1125 49 HOH HOH . D 4 HOH D 26 1126 41 HOH HOH . D 4 HOH D 27 1127 163 HOH HOH . D 4 HOH D 28 1128 63 HOH HOH . D 4 HOH D 29 1129 176 HOH HOH . D 4 HOH D 30 1130 171 HOH HOH . D 4 HOH D 31 1131 17 HOH HOH . D 4 HOH D 32 1132 155 HOH HOH . D 4 HOH D 33 1133 47 HOH HOH . D 4 HOH D 34 1134 72 HOH HOH . D 4 HOH D 35 1135 3 HOH HOH . D 4 HOH D 36 1136 13 HOH HOH . D 4 HOH D 37 1137 40 HOH HOH . D 4 HOH D 38 1138 125 HOH HOH . D 4 HOH D 39 1139 48 HOH HOH . D 4 HOH D 40 1140 132 HOH HOH . D 4 HOH D 41 1141 34 HOH HOH . D 4 HOH D 42 1142 164 HOH HOH . D 4 HOH D 43 1143 111 HOH HOH . D 4 HOH D 44 1144 37 HOH HOH . D 4 HOH D 45 1145 11 HOH HOH . D 4 HOH D 46 1146 118 HOH HOH . D 4 HOH D 47 1147 112 HOH HOH . D 4 HOH D 48 1148 169 HOH HOH . D 4 HOH D 49 1149 122 HOH HOH . D 4 HOH D 50 1150 27 HOH HOH . D 4 HOH D 51 1151 198 HOH HOH . D 4 HOH D 52 1152 20 HOH HOH . D 4 HOH D 53 1153 12 HOH HOH . D 4 HOH D 54 1154 21 HOH HOH . D 4 HOH D 55 1155 62 HOH HOH . D 4 HOH D 56 1156 15 HOH HOH . D 4 HOH D 57 1157 186 HOH HOH . D 4 HOH D 58 1158 16 HOH HOH . D 4 HOH D 59 1159 139 HOH HOH . D 4 HOH D 60 1160 187 HOH HOH . D 4 HOH D 61 1161 106 HOH HOH . D 4 HOH D 62 1162 90 HOH HOH . D 4 HOH D 63 1163 104 HOH HOH . D 4 HOH D 64 1164 201 HOH HOH . D 4 HOH D 65 1165 7 HOH HOH . D 4 HOH D 66 1166 105 HOH HOH . D 4 HOH D 67 1167 32 HOH HOH . D 4 HOH D 68 1168 53 HOH HOH . D 4 HOH D 69 1169 113 HOH HOH . D 4 HOH D 70 1170 51 HOH HOH . D 4 HOH D 71 1171 200 HOH HOH . D 4 HOH D 72 1172 82 HOH HOH . D 4 HOH D 73 1173 78 HOH HOH . D 4 HOH D 74 1174 102 HOH HOH . D 4 HOH D 75 1175 61 HOH HOH . D 4 HOH D 76 1176 36 HOH HOH . D 4 HOH D 77 1177 100 HOH HOH . D 4 HOH D 78 1178 85 HOH HOH . D 4 HOH D 79 1179 159 HOH HOH . D 4 HOH D 80 1180 204 HOH HOH . D 4 HOH D 81 1181 120 HOH HOH . D 4 HOH D 82 1182 145 HOH HOH . D 4 HOH D 83 1183 73 HOH HOH . D 4 HOH D 84 1184 39 HOH HOH . D 4 HOH D 85 1185 180 HOH HOH . D 4 HOH D 86 1186 134 HOH HOH . D 4 HOH D 87 1187 188 HOH HOH . D 4 HOH D 88 1188 55 HOH HOH . D 4 HOH D 89 1189 23 HOH HOH . D 4 HOH D 90 1190 135 HOH HOH . D 4 HOH D 91 1191 137 HOH HOH . D 4 HOH D 92 1192 103 HOH HOH . D 4 HOH D 93 1193 45 HOH HOH . D 4 HOH D 94 1194 69 HOH HOH . D 4 HOH D 95 1195 28 HOH HOH . D 4 HOH D 96 1196 70 HOH HOH . D 4 HOH D 97 1197 166 HOH HOH . D 4 HOH D 98 1198 144 HOH HOH . D 4 HOH D 99 1199 89 HOH HOH . D 4 HOH D 100 1200 127 HOH HOH . D 4 HOH D 101 1201 136 HOH HOH . D 4 HOH D 102 1202 96 HOH HOH . D 4 HOH D 103 1203 74 HOH HOH . D 4 HOH D 104 1204 202 HOH HOH . D 4 HOH D 105 1205 114 HOH HOH . D 4 HOH D 106 1206 189 HOH HOH . D 4 HOH D 107 1207 160 HOH HOH . D 4 HOH D 108 1208 84 HOH HOH . D 4 HOH D 109 1209 178 HOH HOH . D 4 HOH D 110 1210 31 HOH HOH . D 4 HOH D 111 1211 143 HOH HOH . D 4 HOH D 112 1212 38 HOH HOH . D 4 HOH D 113 1213 179 HOH HOH . D 4 HOH D 114 1214 203 HOH HOH . D 4 HOH D 115 1215 199 HOH HOH . D 4 HOH D 116 1216 141 HOH HOH . D 4 HOH D 117 1217 183 HOH HOH . D 4 HOH D 118 1218 152 HOH HOH . D 4 HOH D 119 1219 147 HOH HOH . D 4 HOH D 120 1220 43 HOH HOH . D 4 HOH D 121 1221 167 HOH HOH . D 4 HOH D 122 1222 99 HOH HOH . D 4 HOH D 123 1223 101 HOH HOH . D 4 HOH D 124 1224 190 HOH HOH . D 4 HOH D 125 1225 191 HOH HOH . D 4 HOH D 126 1226 158 HOH HOH . D 4 HOH D 127 1227 148 HOH HOH . D 4 HOH D 128 1228 83 HOH HOH . E 4 HOH I 1 201 52 HOH HOH . E 4 HOH I 2 202 87 HOH HOH . E 4 HOH I 3 203 185 HOH HOH . E 4 HOH I 4 204 5 HOH HOH . E 4 HOH I 5 205 117 HOH HOH . E 4 HOH I 6 206 19 HOH HOH . E 4 HOH I 7 207 165 HOH HOH . E 4 HOH I 8 208 115 HOH HOH . E 4 HOH I 9 209 6 HOH HOH . E 4 HOH I 10 210 182 HOH HOH . E 4 HOH I 11 211 121 HOH HOH . E 4 HOH I 12 212 146 HOH HOH . E 4 HOH I 13 213 59 HOH HOH . E 4 HOH I 14 214 149 HOH HOH . E 4 HOH I 15 215 131 HOH HOH . E 4 HOH I 16 216 174 HOH HOH . E 4 HOH I 17 217 116 HOH HOH . E 4 HOH I 18 218 42 HOH HOH . E 4 HOH I 19 219 184 HOH HOH . E 4 HOH I 20 220 95 HOH HOH . E 4 HOH I 21 221 94 HOH HOH . E 4 HOH I 22 222 57 HOH HOH . E 4 HOH I 23 223 123 HOH HOH . E 4 HOH I 24 224 8 HOH HOH . E 4 HOH I 25 225 18 HOH HOH . E 4 HOH I 26 226 173 HOH HOH . E 4 HOH I 27 227 133 HOH HOH . E 4 HOH I 28 228 81 HOH HOH . E 4 HOH I 29 229 44 HOH HOH . E 4 HOH I 30 230 128 HOH HOH . E 4 HOH I 31 231 4 HOH HOH . E 4 HOH I 32 232 71 HOH HOH . E 4 HOH I 33 233 24 HOH HOH . E 4 HOH I 34 234 65 HOH HOH . E 4 HOH I 35 235 25 HOH HOH . E 4 HOH I 36 236 108 HOH HOH . E 4 HOH I 37 237 22 HOH HOH . E 4 HOH I 38 238 110 HOH HOH . E 4 HOH I 39 239 56 HOH HOH . E 4 HOH I 40 240 142 HOH HOH . E 4 HOH I 41 241 76 HOH HOH . E 4 HOH I 42 242 92 HOH HOH . E 4 HOH I 43 243 98 HOH HOH . E 4 HOH I 44 244 67 HOH HOH . E 4 HOH I 45 245 33 HOH HOH . E 4 HOH I 46 246 151 HOH HOH . E 4 HOH I 47 247 60 HOH HOH . E 4 HOH I 48 248 80 HOH HOH . E 4 HOH I 49 249 129 HOH HOH . E 4 HOH I 50 250 75 HOH HOH . E 4 HOH I 51 251 77 HOH HOH . E 4 HOH I 52 252 172 HOH HOH . E 4 HOH I 53 253 126 HOH HOH . E 4 HOH I 54 254 97 HOH HOH . E 4 HOH I 55 255 68 HOH HOH . E 4 HOH I 56 256 156 HOH HOH . E 4 HOH I 57 257 193 HOH HOH . E 4 HOH I 58 258 66 HOH HOH . E 4 HOH I 59 259 153 HOH HOH . E 4 HOH I 60 260 91 HOH HOH . E 4 HOH I 61 261 29 HOH HOH . E 4 HOH I 62 262 177 HOH HOH . E 4 HOH I 63 263 107 HOH HOH . E 4 HOH I 64 264 157 HOH HOH . E 4 HOH I 65 265 130 HOH HOH . E 4 HOH I 66 266 194 HOH HOH . E 4 HOH I 67 267 195 HOH HOH . E 4 HOH I 68 268 93 HOH HOH . E 4 HOH I 69 269 181 HOH HOH . E 4 HOH I 70 270 162 HOH HOH . E 4 HOH I 71 271 168 HOH HOH . E 4 HOH I 72 272 154 HOH HOH . E 4 HOH I 73 273 170 HOH HOH . E 4 HOH I 74 274 150 HOH HOH . E 4 HOH I 75 275 196 HOH HOH . E 4 HOH I 76 276 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . C 3 9.136 45.845 9.576 1 22.14 ? C ACT 1001 D 1 HETATM 2 O O ACT . . . C 3 9.076 44.856 8.815 1 30.17 ? O ACT 1001 D 1 HETATM 3 O OXT ACT . . . C 3 9.792 45.652 10.585 1 16.72 ? OXT ACT 1001 D 1 HETATM 4 C CH3 ACT . . . C 3 8.471 47.163 9.299 1 32.01 ? CH3 ACT 1001 D 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #