data_5KNJ # _model_server_result.job_id 32qcfgkbV-9t-9MYQWTd7Q _model_server_result.datetime_utc '2025-08-01 00:06:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5knj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5KNJ # _exptl.entry_id 5KNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 573.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-[methyl-[2-[(3-sulfamoylphenyl)amino]pyrimidin-4-yl]amino]phenyl]-3-[4-(trifluoromethyloxy)phenyl]urea _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KNJ _cell.length_a 54.488 _cell.length_b 90.879 _cell.length_c 115.618 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C25 H22 F3 N7 O4 S' _chem_comp.formula_weight 573.547 _chem_comp.id 6UX _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-[methyl-[2-[(3-sulfamoylphenyl)amino]pyrimidin-4-yl]amino]phenyl]-3-[4-(trifluoromethyloxy)phenyl]urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C1 6UX sing 1 n n C1 F2 6UX sing 2 n n C1 F3 6UX sing 3 n n C1 OH 6UX sing 4 n n OH CZ 6UX sing 5 n n CZ CE1 6UX doub 6 n y CZ CE2 6UX sing 7 n y CE1 CD1 6UX sing 8 n y CD1 CG 6UX doub 9 n y CG CD2 6UX sing 10 n y CG N1 6UX sing 11 n n CD2 CE2 6UX doub 12 n y N1 C8 6UX sing 13 n n C8 O 6UX doub 14 n n C8 N 6UX sing 15 n n N CA 6UX sing 16 n n CA C10 6UX doub 17 n y CA C14 6UX sing 18 n y C10 C11 6UX sing 19 n y C11 C12 6UX doub 20 n y C12 C13 6UX sing 21 n y C12 N3 6UX sing 22 n n C13 C14 6UX doub 23 n y N3 C15 6UX sing 24 n n N3 C16 6UX sing 25 n n C16 N4 6UX doub 26 n y C16 C19 6UX sing 27 n y N4 C17 6UX sing 28 n y C17 N5 6UX doub 29 n y C17 N6 6UX sing 30 n n N5 C18 6UX sing 31 n y C18 C19 6UX doub 32 n y N6 C20 6UX sing 33 n n C20 C21 6UX doub 34 n y C20 C25 6UX sing 35 n y C21 C22 6UX sing 36 n y C22 C23 6UX doub 37 n y C22 S1 6UX sing 38 n n C23 C24 6UX sing 39 n y C24 C25 6UX doub 40 n y S1 O3 6UX doub 41 n n S1 O4 6UX doub 42 n n S1 N7 6UX sing 43 n n CE1 H1 6UX sing 44 n n CD1 H2 6UX sing 45 n n CD2 H3 6UX sing 46 n n CE2 H4 6UX sing 47 n n N1 H5 6UX sing 48 n n N H6 6UX sing 49 n n C10 H7 6UX sing 50 n n C11 H8 6UX sing 51 n n C13 H9 6UX sing 52 n n C14 H10 6UX sing 53 n n C15 H11 6UX sing 54 n n C15 H12 6UX sing 55 n n C15 H13 6UX sing 56 n n C18 H14 6UX sing 57 n n C19 H15 6UX sing 58 n n N6 H16 6UX sing 59 n n C21 H17 6UX sing 60 n n C23 H18 6UX sing 61 n n C24 H19 6UX sing 62 n n C25 H20 6UX sing 63 n n N7 H21 6UX sing 64 n n N7 H22 6UX sing 65 n n # _atom_sites.entry_id 5KNJ _atom_sites.fract_transf_matrix[1][1] 0.018353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6UX A 1 501 2 6UX Cd1 . D 2 6UX B 1 501 1 6UX Cd1 . E 3 HOH A 1 601 80 HOH HOH . E 3 HOH A 2 602 82 HOH HOH . E 3 HOH A 3 603 83 HOH HOH . E 3 HOH A 4 604 116 HOH HOH . E 3 HOH A 5 605 31 HOH HOH . E 3 HOH A 6 606 95 HOH HOH . E 3 HOH A 7 607 55 HOH HOH . E 3 HOH A 8 608 88 HOH HOH . E 3 HOH A 9 609 89 HOH HOH . E 3 HOH A 10 610 100 HOH HOH . E 3 HOH A 11 611 126 HOH HOH . E 3 HOH A 12 612 139 HOH HOH . E 3 HOH A 13 613 56 HOH HOH . E 3 HOH A 14 614 4 HOH HOH . E 3 HOH A 15 615 32 HOH HOH . E 3 HOH A 16 616 65 HOH HOH . E 3 HOH A 17 617 42 HOH HOH . E 3 HOH A 18 618 38 HOH HOH . E 3 HOH A 19 619 48 HOH HOH . E 3 HOH A 20 620 138 HOH HOH . E 3 HOH A 21 621 104 HOH HOH . E 3 HOH A 22 622 107 HOH HOH . E 3 HOH A 23 623 86 HOH HOH . E 3 HOH A 24 624 7 HOH HOH . E 3 HOH A 25 625 19 HOH HOH . E 3 HOH A 26 626 63 HOH HOH . E 3 HOH A 27 627 33 HOH HOH . E 3 HOH A 28 628 24 HOH HOH . E 3 HOH A 29 629 105 HOH HOH . E 3 HOH A 30 630 118 HOH HOH . E 3 HOH A 31 631 103 HOH HOH . E 3 HOH A 32 632 130 HOH HOH . E 3 HOH A 33 633 135 HOH HOH . E 3 HOH A 34 634 13 HOH HOH . E 3 HOH A 35 635 72 HOH HOH . E 3 HOH A 36 636 123 HOH HOH . E 3 HOH A 37 637 98 HOH HOH . E 3 HOH A 38 638 29 HOH HOH . E 3 HOH A 39 639 17 HOH HOH . E 3 HOH A 40 640 25 HOH HOH . E 3 HOH A 41 641 84 HOH HOH . E 3 HOH A 42 642 9 HOH HOH . E 3 HOH A 43 643 109 HOH HOH . E 3 HOH A 44 644 81 HOH HOH . E 3 HOH A 45 645 127 HOH HOH . E 3 HOH A 46 646 79 HOH HOH . E 3 HOH A 47 647 16 HOH HOH . E 3 HOH A 48 648 23 HOH HOH . E 3 HOH A 49 649 36 HOH HOH . E 3 HOH A 50 650 45 HOH HOH . E 3 HOH A 51 651 14 HOH HOH . E 3 HOH A 52 652 73 HOH HOH . E 3 HOH A 53 653 21 HOH HOH . E 3 HOH A 54 654 136 HOH HOH . E 3 HOH A 55 655 128 HOH HOH . E 3 HOH A 56 656 140 HOH HOH . E 3 HOH A 57 657 106 HOH HOH . E 3 HOH A 58 658 22 HOH HOH . E 3 HOH A 59 659 26 HOH HOH . E 3 HOH A 60 660 35 HOH HOH . E 3 HOH A 61 661 77 HOH HOH . E 3 HOH A 62 662 58 HOH HOH . F 3 HOH B 1 601 30 HOH HOH . F 3 HOH B 2 602 70 HOH HOH . F 3 HOH B 3 603 61 HOH HOH . F 3 HOH B 4 604 125 HOH HOH . F 3 HOH B 5 605 92 HOH HOH . F 3 HOH B 6 606 74 HOH HOH . F 3 HOH B 7 607 122 HOH HOH . F 3 HOH B 8 608 6 HOH HOH . F 3 HOH B 9 609 2 HOH HOH . F 3 HOH B 10 610 117 HOH HOH . F 3 HOH B 11 611 46 HOH HOH . F 3 HOH B 12 612 101 HOH HOH . F 3 HOH B 13 613 76 HOH HOH . F 3 HOH B 14 614 113 HOH HOH . F 3 HOH B 15 615 124 HOH HOH . F 3 HOH B 16 616 87 HOH HOH . F 3 HOH B 17 617 78 HOH HOH . F 3 HOH B 18 618 10 HOH HOH . F 3 HOH B 19 619 18 HOH HOH . F 3 HOH B 20 620 49 HOH HOH . F 3 HOH B 21 621 51 HOH HOH . F 3 HOH B 22 622 132 HOH HOH . F 3 HOH B 23 623 28 HOH HOH . F 3 HOH B 24 624 97 HOH HOH . F 3 HOH B 25 625 120 HOH HOH . F 3 HOH B 26 626 39 HOH HOH . F 3 HOH B 27 627 121 HOH HOH . F 3 HOH B 28 628 59 HOH HOH . F 3 HOH B 29 629 66 HOH HOH . F 3 HOH B 30 630 34 HOH HOH . F 3 HOH B 31 631 57 HOH HOH . F 3 HOH B 32 632 96 HOH HOH . F 3 HOH B 33 633 90 HOH HOH . F 3 HOH B 34 634 1 HOH HOH . F 3 HOH B 35 635 3 HOH HOH . F 3 HOH B 36 636 40 HOH HOH . F 3 HOH B 37 637 37 HOH HOH . F 3 HOH B 38 638 43 HOH HOH . F 3 HOH B 39 639 71 HOH HOH . F 3 HOH B 40 640 108 HOH HOH . F 3 HOH B 41 641 8 HOH HOH . F 3 HOH B 42 642 134 HOH HOH . F 3 HOH B 43 643 11 HOH HOH . F 3 HOH B 44 644 20 HOH HOH . F 3 HOH B 45 645 91 HOH HOH . F 3 HOH B 46 646 44 HOH HOH . F 3 HOH B 47 647 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F1 6UX . . . D 2 -20.595 2.555 5.094 1 39.49 ? F1 6UX 501 B 1 HETATM 2 C C1 6UX . . . D 2 -19.506 2.03 5.66 1 37.59 ? C1 6UX 501 B 1 HETATM 3 F F2 6UX . . . D 2 -19.517 2.284 6.971 1 39.2 ? F2 6UX 501 B 1 HETATM 4 F F3 6UX . . . D 2 -19.504 0.719 5.469 1 40.97 ? F3 6UX 501 B 1 HETATM 5 O OH 6UX . . . D 2 -18.33 2.594 5.065 1 36.62 ? OH 6UX 501 B 1 HETATM 6 C CZ 6UX . . . D 2 -18.287 3.945 5.236 1 35 ? CZ 6UX 501 B 1 HETATM 7 C CE1 6UX . . . D 2 -18.526 4.79 4.159 1 33.25 ? CE1 6UX 501 B 1 HETATM 8 C CD1 6UX . . . D 2 -18.482 6.168 4.334 1 33.2 ? CD1 6UX 501 B 1 HETATM 9 C CG 6UX . . . D 2 -18.198 6.701 5.586 1 32.9 ? CG 6UX 501 B 1 HETATM 10 C CD2 6UX . . . D 2 -17.958 5.856 6.663 1 32.8 ? CD2 6UX 501 B 1 HETATM 11 C CE2 6UX . . . D 2 -18.003 4.478 6.488 1 34.23 ? CE2 6UX 501 B 1 HETATM 12 N N1 6UX . . . D 2 -18.155 8.027 5.754 1 32.88 ? N1 6UX 501 B 1 HETATM 13 C C8 6UX . . . D 2 -19.138 8.809 5.253 1 33.7 ? C8 6UX 501 B 1 HETATM 14 O O 6UX . . . D 2 -20.101 8.344 4.629 1 33.03 ? O 6UX 501 B 1 HETATM 15 N N 6UX . . . D 2 -18.995 10.134 5.481 1 32.29 ? N 6UX 501 B 1 HETATM 16 C CA 6UX . . . D 2 -19.911 10.997 5.029 1 30.47 ? CA 6UX 501 B 1 HETATM 17 C C10 6UX . . . D 2 -21.239 10.87 5.42 1 28.79 ? C10 6UX 501 B 1 HETATM 18 C C11 6UX . . . D 2 -22.191 11.767 4.95 1 29.51 ? C11 6UX 501 B 1 HETATM 19 C C12 6UX . . . D 2 -21.815 12.791 4.088 1 31.34 ? C12 6UX 501 B 1 HETATM 20 C C13 6UX . . . D 2 -20.487 12.918 3.697 1 31.68 ? C13 6UX 501 B 1 HETATM 21 C C14 6UX . . . D 2 -19.535 12.021 4.168 1 31.12 ? C14 6UX 501 B 1 HETATM 22 N N3 6UX . . . D 2 -22.725 13.65 3.639 1 31.35 ? N3 6UX 501 B 1 HETATM 23 C C15 6UX . . . D 2 -23.322 14.635 4.553 1 30.3 ? C15 6UX 501 B 1 HETATM 24 C C16 6UX . . . D 2 -23.096 13.618 2.362 1 29.02 ? C16 6UX 501 B 1 HETATM 25 N N4 6UX . . . D 2 -24.365 13.895 2.027 1 28.88 ? N4 6UX 501 B 1 HETATM 26 C C17 6UX . . . D 2 -24.771 13.871 0.748 1 27.92 ? C17 6UX 501 B 1 HETATM 27 N N5 6UX . . . D 2 -23.916 13.569 -0.24 1 26.58 ? N5 6UX 501 B 1 HETATM 28 C C18 6UX . . . D 2 -22.582 13.273 0.054 1 26.47 ? C18 6UX 501 B 1 HETATM 29 C C19 6UX . . . D 2 -22.169 13.299 1.378 1 26.75 ? C19 6UX 501 B 1 HETATM 30 N N6 6UX . . . D 2 -26.038 14.151 0.456 1 30.46 ? N6 6UX 501 B 1 HETATM 31 C C20 6UX . . . D 2 -26.535 15.284 0.946 1 30.16 ? C20 6UX 501 B 1 HETATM 32 C C21 6UX . . . D 2 -26.558 15.495 2.32 1 30.8 ? C21 6UX 501 B 1 HETATM 33 C C22 6UX . . . D 2 -27.077 16.678 2.832 1 34.79 ? C22 6UX 501 B 1 HETATM 34 C C23 6UX . . . D 2 -27.574 17.65 1.971 1 33.18 ? C23 6UX 501 B 1 HETATM 35 C C24 6UX . . . D 2 -27.551 17.501 0.557 1 32.15 ? C24 6UX 501 B 1 HETATM 36 C C25 6UX . . . D 2 -27.032 16.255 0.085 1 31.59 ? C25 6UX 501 B 1 HETATM 37 S S1 6UX . . . D 2 -27.107 16.959 4.649 1 42.02 ? S1 6UX 501 B 1 HETATM 38 O O3 6UX . . . D 2 -26.113 16.188 5.472 1 41.66 ? O3 6UX 501 B 1 HETATM 39 O O4 6UX . . . D 2 -27.356 18.506 5.093 1 41.86 ? O4 6UX 501 B 1 HETATM 40 N N7 6UX . . . D 2 -28.498 16.114 4.573 1 43.24 ? N7 6UX 501 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #