data_5KNK
#
_model_server_result.job_id            uBSKVY7q_bpP6QfqtI98eQ 
_model_server_result.datetime_utc      '2024-11-22 02:20:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5knk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":405}' 
#
_entry.id    5KNK 
#
_exptl.entry_id    5KNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KNK 
_cell.length_a            59.3 
_cell.length_b            145.47 
_cell.length_c            87.61 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     5KNK 
_atom_sites.fract_transf_matrix[1][1]    0.016863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011414 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 B 1 401 1 SO4 SO4 . 
C 2 SO4 B 1 402 2 SO4 SO4 . 
D 2 SO4 B 1 403 3 SO4 SO4 . 
E 2 SO4 B 1 404 7 SO4 SO4 . 
F 3 GOL B 1 405 1 GOL GOL . 
G 3 GOL B 1 406 2 GOL GOL . 
H 3 GOL B 1 407 3 GOL GOL . 
I 4 LMT B 1 408 1 LMT LMT . 
J 4 LMT B 1 409 2 LMT LMT . 
K 5 11A B 1 410 1 11A MYA . 
L 6 HOH B 1 501 110 HOH HOH . 
L 6 HOH B 2 502 93 HOH HOH . 
L 6 HOH B 3 503 76 HOH HOH . 
L 6 HOH B 4 504 82 HOH HOH . 
L 6 HOH B 5 505 58 HOH HOH . 
L 6 HOH B 6 506 18 HOH HOH . 
L 6 HOH B 7 507 22 HOH HOH . 
L 6 HOH B 8 508 106 HOH HOH . 
L 6 HOH B 9 509 36 HOH HOH . 
L 6 HOH B 10 510 7 HOH HOH . 
L 6 HOH B 11 511 90 HOH HOH . 
L 6 HOH B 12 512 65 HOH HOH . 
L 6 HOH B 13 513 77 HOH HOH . 
L 6 HOH B 14 514 8 HOH HOH . 
L 6 HOH B 15 515 41 HOH HOH . 
L 6 HOH B 16 516 89 HOH HOH . 
L 6 HOH B 17 517 70 HOH HOH . 
L 6 HOH B 18 518 52 HOH HOH . 
L 6 HOH B 19 519 115 HOH HOH . 
L 6 HOH B 20 520 16 HOH HOH . 
L 6 HOH B 21 521 30 HOH HOH . 
L 6 HOH B 22 522 98 HOH HOH . 
L 6 HOH B 23 523 81 HOH HOH . 
L 6 HOH B 24 524 103 HOH HOH . 
L 6 HOH B 25 525 84 HOH HOH . 
L 6 HOH B 26 526 72 HOH HOH . 
L 6 HOH B 27 527 102 HOH HOH . 
L 6 HOH B 28 528 112 HOH HOH . 
L 6 HOH B 29 529 74 HOH HOH . 
L 6 HOH B 30 530 37 HOH HOH . 
L 6 HOH B 31 531 101 HOH HOH . 
L 6 HOH B 32 532 17 HOH HOH . 
L 6 HOH B 33 533 75 HOH HOH . 
L 6 HOH B 34 534 63 HOH HOH . 
L 6 HOH B 35 535 73 HOH HOH . 
L 6 HOH B 36 536 111 HOH HOH . 
L 6 HOH B 37 537 25 HOH HOH . 
L 6 HOH B 38 538 119 HOH HOH . 
L 6 HOH B 39 539 83 HOH HOH . 
L 6 HOH B 40 540 55 HOH HOH . 
L 6 HOH B 41 541 116 HOH HOH . 
L 6 HOH B 42 542 88 HOH HOH . 
L 6 HOH B 43 543 107 HOH HOH . 
L 6 HOH B 44 544 62 HOH HOH . 
L 6 HOH B 45 545 12 HOH HOH . 
L 6 HOH B 46 546 4 HOH HOH . 
L 6 HOH B 47 547 1 HOH HOH . 
L 6 HOH B 48 548 2 HOH HOH . 
L 6 HOH B 49 549 23 HOH HOH . 
L 6 HOH B 50 550 104 HOH HOH . 
L 6 HOH B 51 551 14 HOH HOH . 
L 6 HOH B 52 552 71 HOH HOH . 
L 6 HOH B 53 553 33 HOH HOH . 
L 6 HOH B 54 554 108 HOH HOH . 
L 6 HOH B 55 555 44 HOH HOH . 
L 6 HOH B 56 556 27 HOH HOH . 
L 6 HOH B 57 557 67 HOH HOH . 
L 6 HOH B 58 558 28 HOH HOH . 
L 6 HOH B 59 559 105 HOH HOH . 
L 6 HOH B 60 560 5 HOH HOH . 
L 6 HOH B 61 561 53 HOH HOH . 
L 6 HOH B 62 562 91 HOH HOH . 
L 6 HOH B 63 563 24 HOH HOH . 
L 6 HOH B 64 564 92 HOH HOH . 
L 6 HOH B 65 565 117 HOH HOH . 
L 6 HOH B 66 566 114 HOH HOH . 
L 6 HOH B 67 567 26 HOH HOH . 
L 6 HOH B 68 568 109 HOH HOH . 
L 6 HOH B 69 569 13 HOH HOH . 
L 6 HOH B 70 570 121 HOH HOH . 
L 6 HOH B 71 571 49 HOH HOH . 
L 6 HOH B 72 572 118 HOH HOH . 
L 6 HOH B 73 573 51 HOH HOH . 
L 6 HOH B 74 574 48 HOH HOH . 
L 6 HOH B 75 575 3 HOH HOH . 
L 6 HOH B 76 576 38 HOH HOH . 
L 6 HOH B 77 577 56 HOH HOH . 
L 6 HOH B 78 578 42 HOH HOH . 
L 6 HOH B 79 579 113 HOH HOH . 
L 6 HOH B 80 580 45 HOH HOH . 
L 6 HOH B 81 581 15 HOH HOH . 
L 6 HOH B 82 582 61 HOH HOH . 
L 6 HOH B 83 583 94 HOH HOH . 
L 6 HOH B 84 584 120 HOH HOH . 
L 6 HOH B 85 585 96 HOH HOH . 
L 6 HOH B 86 586 66 HOH HOH . 
L 6 HOH B 87 587 64 HOH HOH . 
L 6 HOH B 88 588 95 HOH HOH . 
L 6 HOH B 89 589 97 HOH HOH . 
L 6 HOH B 90 590 54 HOH HOH . 
L 6 HOH B 91 591 6 HOH HOH . 
L 6 HOH B 92 592 47 HOH HOH . 
L 6 HOH B 93 593 57 HOH HOH . 
L 6 HOH B 94 594 29 HOH HOH . 
L 6 HOH B 95 595 100 HOH HOH . 
L 6 HOH B 96 596 46 HOH HOH . 
L 6 HOH B 97 597 60 HOH HOH . 
L 6 HOH B 98 598 59 HOH HOH . 
L 6 HOH B 99 599 50 HOH HOH . 
L 6 HOH B 100 600 43 HOH HOH . 
L 6 HOH B 101 601 86 HOH HOH . 
L 6 HOH B 102 602 99 HOH HOH . 
L 6 HOH B 103 603 85 HOH HOH . 
L 6 HOH B 104 604 78 HOH HOH . 
L 6 HOH B 105 605 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 -36.262 -18.793 4.875 1 31.78 ? C1 GOL 405 B 1 
HETATM 2 O O1 GOL . . . F 3 -36.776 -20.003 4.404 1 54.68 ? O1 GOL 405 B 1 
HETATM 3 C C2 GOL . . . F 3 -35.829 -18.997 6.319 1 48.79 ? C2 GOL 405 B 1 
HETATM 4 O O2 GOL . . . F 3 -35.324 -17.803 6.851 1 45.36 ? O2 GOL 405 B 1 
HETATM 5 C C3 GOL . . . F 3 -37.019 -19.492 7.139 1 53.8 ? C3 GOL 405 B 1 
HETATM 6 O O3 GOL . . . F 3 -36.547 -20.305 8.178 1 61.12 ? O3 GOL 405 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#