data_5KNK # _model_server_result.job_id gVSVfI_mQRZOUFiMKU2WXg _model_server_result.datetime_utc '2024-11-06 09:05:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5knk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5KNK # _exptl.entry_id 5KNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KNK _cell.length_a 59.3 _cell.length_b 145.47 _cell.length_c 87.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 5KNK _atom_sites.fract_transf_matrix[1][1] 0.016863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 B 1 401 1 SO4 SO4 . C 2 SO4 B 1 402 2 SO4 SO4 . D 2 SO4 B 1 403 3 SO4 SO4 . E 2 SO4 B 1 404 7 SO4 SO4 . F 3 GOL B 1 405 1 GOL GOL . G 3 GOL B 1 406 2 GOL GOL . H 3 GOL B 1 407 3 GOL GOL . I 4 LMT B 1 408 1 LMT LMT . J 4 LMT B 1 409 2 LMT LMT . K 5 11A B 1 410 1 11A MYA . L 6 HOH B 1 501 110 HOH HOH . L 6 HOH B 2 502 93 HOH HOH . L 6 HOH B 3 503 76 HOH HOH . L 6 HOH B 4 504 82 HOH HOH . L 6 HOH B 5 505 58 HOH HOH . L 6 HOH B 6 506 18 HOH HOH . L 6 HOH B 7 507 22 HOH HOH . L 6 HOH B 8 508 106 HOH HOH . L 6 HOH B 9 509 36 HOH HOH . L 6 HOH B 10 510 7 HOH HOH . L 6 HOH B 11 511 90 HOH HOH . L 6 HOH B 12 512 65 HOH HOH . L 6 HOH B 13 513 77 HOH HOH . L 6 HOH B 14 514 8 HOH HOH . L 6 HOH B 15 515 41 HOH HOH . L 6 HOH B 16 516 89 HOH HOH . L 6 HOH B 17 517 70 HOH HOH . L 6 HOH B 18 518 52 HOH HOH . L 6 HOH B 19 519 115 HOH HOH . L 6 HOH B 20 520 16 HOH HOH . L 6 HOH B 21 521 30 HOH HOH . L 6 HOH B 22 522 98 HOH HOH . L 6 HOH B 23 523 81 HOH HOH . L 6 HOH B 24 524 103 HOH HOH . L 6 HOH B 25 525 84 HOH HOH . L 6 HOH B 26 526 72 HOH HOH . L 6 HOH B 27 527 102 HOH HOH . L 6 HOH B 28 528 112 HOH HOH . L 6 HOH B 29 529 74 HOH HOH . L 6 HOH B 30 530 37 HOH HOH . L 6 HOH B 31 531 101 HOH HOH . L 6 HOH B 32 532 17 HOH HOH . L 6 HOH B 33 533 75 HOH HOH . L 6 HOH B 34 534 63 HOH HOH . L 6 HOH B 35 535 73 HOH HOH . L 6 HOH B 36 536 111 HOH HOH . L 6 HOH B 37 537 25 HOH HOH . L 6 HOH B 38 538 119 HOH HOH . L 6 HOH B 39 539 83 HOH HOH . L 6 HOH B 40 540 55 HOH HOH . L 6 HOH B 41 541 116 HOH HOH . L 6 HOH B 42 542 88 HOH HOH . L 6 HOH B 43 543 107 HOH HOH . L 6 HOH B 44 544 62 HOH HOH . L 6 HOH B 45 545 12 HOH HOH . L 6 HOH B 46 546 4 HOH HOH . L 6 HOH B 47 547 1 HOH HOH . L 6 HOH B 48 548 2 HOH HOH . L 6 HOH B 49 549 23 HOH HOH . L 6 HOH B 50 550 104 HOH HOH . L 6 HOH B 51 551 14 HOH HOH . L 6 HOH B 52 552 71 HOH HOH . L 6 HOH B 53 553 33 HOH HOH . L 6 HOH B 54 554 108 HOH HOH . L 6 HOH B 55 555 44 HOH HOH . L 6 HOH B 56 556 27 HOH HOH . L 6 HOH B 57 557 67 HOH HOH . L 6 HOH B 58 558 28 HOH HOH . L 6 HOH B 59 559 105 HOH HOH . L 6 HOH B 60 560 5 HOH HOH . L 6 HOH B 61 561 53 HOH HOH . L 6 HOH B 62 562 91 HOH HOH . L 6 HOH B 63 563 24 HOH HOH . L 6 HOH B 64 564 92 HOH HOH . L 6 HOH B 65 565 117 HOH HOH . L 6 HOH B 66 566 114 HOH HOH . L 6 HOH B 67 567 26 HOH HOH . L 6 HOH B 68 568 109 HOH HOH . L 6 HOH B 69 569 13 HOH HOH . L 6 HOH B 70 570 121 HOH HOH . L 6 HOH B 71 571 49 HOH HOH . L 6 HOH B 72 572 118 HOH HOH . L 6 HOH B 73 573 51 HOH HOH . L 6 HOH B 74 574 48 HOH HOH . L 6 HOH B 75 575 3 HOH HOH . L 6 HOH B 76 576 38 HOH HOH . L 6 HOH B 77 577 56 HOH HOH . L 6 HOH B 78 578 42 HOH HOH . L 6 HOH B 79 579 113 HOH HOH . L 6 HOH B 80 580 45 HOH HOH . L 6 HOH B 81 581 15 HOH HOH . L 6 HOH B 82 582 61 HOH HOH . L 6 HOH B 83 583 94 HOH HOH . L 6 HOH B 84 584 120 HOH HOH . L 6 HOH B 85 585 96 HOH HOH . L 6 HOH B 86 586 66 HOH HOH . L 6 HOH B 87 587 64 HOH HOH . L 6 HOH B 88 588 95 HOH HOH . L 6 HOH B 89 589 97 HOH HOH . L 6 HOH B 90 590 54 HOH HOH . L 6 HOH B 91 591 6 HOH HOH . L 6 HOH B 92 592 47 HOH HOH . L 6 HOH B 93 593 57 HOH HOH . L 6 HOH B 94 594 29 HOH HOH . L 6 HOH B 95 595 100 HOH HOH . L 6 HOH B 96 596 46 HOH HOH . L 6 HOH B 97 597 60 HOH HOH . L 6 HOH B 98 598 59 HOH HOH . L 6 HOH B 99 599 50 HOH HOH . L 6 HOH B 100 600 43 HOH HOH . L 6 HOH B 101 601 86 HOH HOH . L 6 HOH B 102 602 99 HOH HOH . L 6 HOH B 103 603 85 HOH HOH . L 6 HOH B 104 604 78 HOH HOH . L 6 HOH B 105 605 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -36.262 -18.793 4.875 1 31.78 ? C1 GOL 405 B 1 HETATM 2 O O1 GOL . . . F 3 -36.776 -20.003 4.404 1 54.68 ? O1 GOL 405 B 1 HETATM 3 C C2 GOL . . . F 3 -35.829 -18.997 6.319 1 48.79 ? C2 GOL 405 B 1 HETATM 4 O O2 GOL . . . F 3 -35.324 -17.803 6.851 1 45.36 ? O2 GOL 405 B 1 HETATM 5 C C3 GOL . . . F 3 -37.019 -19.492 7.139 1 53.8 ? C3 GOL 405 B 1 HETATM 6 O O3 GOL . . . F 3 -36.547 -20.305 8.178 1 61.12 ? O3 GOL 405 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #