data_5KNK # _model_server_result.job_id LS_cl5Je_D7ssB2mJCgjfA _model_server_result.datetime_utc '2024-11-10 14:58:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5knk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 5KNK # _exptl.entry_id 5KNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KNK _cell.length_a 59.3 _cell.length_b 145.47 _cell.length_c 87.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 241 n n C1B O1B LMT sing 242 n n C1B O5B LMT sing 243 n n C1B H1B LMT sing 244 n n C2B C3B LMT sing 245 n n C2B O2B LMT sing 246 n n C2B H2B LMT sing 247 n n C3B C4B LMT sing 248 n n C3B O3B LMT sing 249 n n C3B H3B LMT sing 250 n n C4B C5B LMT sing 251 n n C4B O4' LMT sing 252 n n C4B H4B LMT sing 253 n n C5B C6B LMT sing 254 n n C5B O5B LMT sing 255 n n C5B H5B LMT sing 256 n n C6B O6B LMT sing 257 n n C6B "H6'2" LMT sing 258 n n C6B "H6'1" LMT sing 259 n n O1B C4' LMT sing 260 n n O2B H2O1 LMT sing 261 n n O3B H3O1 LMT sing 262 n n O4' H4O1 LMT sing 263 n n O6B H6B LMT sing 264 n n C1' C2' LMT sing 265 n n C1' O1' LMT sing 266 n n C1' O5' LMT sing 267 n n C1' H1' LMT sing 268 n n C2' C3' LMT sing 269 n n C2' O2' LMT sing 270 n n C2' H2' LMT sing 271 n n C3' C4' LMT sing 272 n n C3' O3' LMT sing 273 n n C3' H3' LMT sing 274 n n C4' C5' LMT sing 275 n n C4' H4' LMT sing 276 n n C5' C6' LMT sing 277 n n C5' O5' LMT sing 278 n n C5' H5' LMT sing 279 n n C6' O6' LMT sing 280 n n C6' H6D LMT sing 281 n n C6' H6E LMT sing 282 n n O1' C1 LMT sing 283 n n O2' H2O2 LMT sing 284 n n O3' H3O2 LMT sing 285 n n O6' H6' LMT sing 286 n n C1 C2 LMT sing 287 n n C1 H12 LMT sing 288 n n C1 H11 LMT sing 289 n n C2 C3 LMT sing 290 n n C2 H22 LMT sing 291 n n C2 H21 LMT sing 292 n n C3 C4 LMT sing 293 n n C3 H32 LMT sing 294 n n C3 H31 LMT sing 295 n n C4 C5 LMT sing 296 n n C4 H42 LMT sing 297 n n C4 H41 LMT sing 298 n n C5 C6 LMT sing 299 n n C5 H52 LMT sing 300 n n C5 H51 LMT sing 301 n n C6 C7 LMT sing 302 n n C6 H62 LMT sing 303 n n C6 H61 LMT sing 304 n n C7 C8 LMT sing 305 n n C7 H72 LMT sing 306 n n C7 H71 LMT sing 307 n n C8 C9 LMT sing 308 n n C8 H82 LMT sing 309 n n C8 H81 LMT sing 310 n n C9 C10 LMT sing 311 n n C9 H92 LMT sing 312 n n C9 H91 LMT sing 313 n n C10 C11 LMT sing 314 n n C10 H102 LMT sing 315 n n C10 H101 LMT sing 316 n n C11 C12 LMT sing 317 n n C11 H112 LMT sing 318 n n C11 H111 LMT sing 319 n n C12 H123 LMT sing 320 n n C12 H122 LMT sing 321 n n C12 H121 LMT sing 322 n n # _atom_sites.entry_id 5KNK _atom_sites.fract_transf_matrix[1][1] 0.016863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 B 1 401 1 SO4 SO4 . C 2 SO4 B 1 402 2 SO4 SO4 . D 2 SO4 B 1 403 3 SO4 SO4 . E 2 SO4 B 1 404 7 SO4 SO4 . F 3 GOL B 1 405 1 GOL GOL . G 3 GOL B 1 406 2 GOL GOL . H 3 GOL B 1 407 3 GOL GOL . I 4 LMT B 1 408 1 LMT LMT . J 4 LMT B 1 409 2 LMT LMT . K 5 11A B 1 410 1 11A MYA . L 6 HOH B 1 501 110 HOH HOH . L 6 HOH B 2 502 93 HOH HOH . L 6 HOH B 3 503 76 HOH HOH . L 6 HOH B 4 504 82 HOH HOH . L 6 HOH B 5 505 58 HOH HOH . L 6 HOH B 6 506 18 HOH HOH . L 6 HOH B 7 507 22 HOH HOH . L 6 HOH B 8 508 106 HOH HOH . L 6 HOH B 9 509 36 HOH HOH . L 6 HOH B 10 510 7 HOH HOH . L 6 HOH B 11 511 90 HOH HOH . L 6 HOH B 12 512 65 HOH HOH . L 6 HOH B 13 513 77 HOH HOH . L 6 HOH B 14 514 8 HOH HOH . L 6 HOH B 15 515 41 HOH HOH . L 6 HOH B 16 516 89 HOH HOH . L 6 HOH B 17 517 70 HOH HOH . L 6 HOH B 18 518 52 HOH HOH . L 6 HOH B 19 519 115 HOH HOH . L 6 HOH B 20 520 16 HOH HOH . L 6 HOH B 21 521 30 HOH HOH . L 6 HOH B 22 522 98 HOH HOH . L 6 HOH B 23 523 81 HOH HOH . L 6 HOH B 24 524 103 HOH HOH . L 6 HOH B 25 525 84 HOH HOH . L 6 HOH B 26 526 72 HOH HOH . L 6 HOH B 27 527 102 HOH HOH . L 6 HOH B 28 528 112 HOH HOH . L 6 HOH B 29 529 74 HOH HOH . L 6 HOH B 30 530 37 HOH HOH . L 6 HOH B 31 531 101 HOH HOH . L 6 HOH B 32 532 17 HOH HOH . L 6 HOH B 33 533 75 HOH HOH . L 6 HOH B 34 534 63 HOH HOH . L 6 HOH B 35 535 73 HOH HOH . L 6 HOH B 36 536 111 HOH HOH . L 6 HOH B 37 537 25 HOH HOH . L 6 HOH B 38 538 119 HOH HOH . L 6 HOH B 39 539 83 HOH HOH . L 6 HOH B 40 540 55 HOH HOH . L 6 HOH B 41 541 116 HOH HOH . L 6 HOH B 42 542 88 HOH HOH . L 6 HOH B 43 543 107 HOH HOH . L 6 HOH B 44 544 62 HOH HOH . L 6 HOH B 45 545 12 HOH HOH . L 6 HOH B 46 546 4 HOH HOH . L 6 HOH B 47 547 1 HOH HOH . L 6 HOH B 48 548 2 HOH HOH . L 6 HOH B 49 549 23 HOH HOH . L 6 HOH B 50 550 104 HOH HOH . L 6 HOH B 51 551 14 HOH HOH . L 6 HOH B 52 552 71 HOH HOH . L 6 HOH B 53 553 33 HOH HOH . L 6 HOH B 54 554 108 HOH HOH . L 6 HOH B 55 555 44 HOH HOH . L 6 HOH B 56 556 27 HOH HOH . L 6 HOH B 57 557 67 HOH HOH . L 6 HOH B 58 558 28 HOH HOH . L 6 HOH B 59 559 105 HOH HOH . L 6 HOH B 60 560 5 HOH HOH . L 6 HOH B 61 561 53 HOH HOH . L 6 HOH B 62 562 91 HOH HOH . L 6 HOH B 63 563 24 HOH HOH . L 6 HOH B 64 564 92 HOH HOH . L 6 HOH B 65 565 117 HOH HOH . L 6 HOH B 66 566 114 HOH HOH . L 6 HOH B 67 567 26 HOH HOH . L 6 HOH B 68 568 109 HOH HOH . L 6 HOH B 69 569 13 HOH HOH . L 6 HOH B 70 570 121 HOH HOH . L 6 HOH B 71 571 49 HOH HOH . L 6 HOH B 72 572 118 HOH HOH . L 6 HOH B 73 573 51 HOH HOH . L 6 HOH B 74 574 48 HOH HOH . L 6 HOH B 75 575 3 HOH HOH . L 6 HOH B 76 576 38 HOH HOH . L 6 HOH B 77 577 56 HOH HOH . L 6 HOH B 78 578 42 HOH HOH . L 6 HOH B 79 579 113 HOH HOH . L 6 HOH B 80 580 45 HOH HOH . L 6 HOH B 81 581 15 HOH HOH . L 6 HOH B 82 582 61 HOH HOH . L 6 HOH B 83 583 94 HOH HOH . L 6 HOH B 84 584 120 HOH HOH . L 6 HOH B 85 585 96 HOH HOH . L 6 HOH B 86 586 66 HOH HOH . L 6 HOH B 87 587 64 HOH HOH . L 6 HOH B 88 588 95 HOH HOH . L 6 HOH B 89 589 97 HOH HOH . L 6 HOH B 90 590 54 HOH HOH . L 6 HOH B 91 591 6 HOH HOH . L 6 HOH B 92 592 47 HOH HOH . L 6 HOH B 93 593 57 HOH HOH . L 6 HOH B 94 594 29 HOH HOH . L 6 HOH B 95 595 100 HOH HOH . L 6 HOH B 96 596 46 HOH HOH . L 6 HOH B 97 597 60 HOH HOH . L 6 HOH B 98 598 59 HOH HOH . L 6 HOH B 99 599 50 HOH HOH . L 6 HOH B 100 600 43 HOH HOH . L 6 HOH B 101 601 86 HOH HOH . L 6 HOH B 102 602 99 HOH HOH . L 6 HOH B 103 603 85 HOH HOH . L 6 HOH B 104 604 78 HOH HOH . L 6 HOH B 105 605 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . I 4 -16.704 -15.278 13.228 1 34.26 ? C1B LMT 408 B 1 HETATM 2 C C2B LMT . . . I 4 -16.67 -16.073 14.524 1 36.3 ? C2B LMT 408 B 1 HETATM 3 C C3B LMT . . . I 4 -16.337 -17.498 14.24 1 38.93 ? C3B LMT 408 B 1 HETATM 4 C C4B LMT . . . I 4 -17.333 -18.134 13.316 1 42.6 ? C4B LMT 408 B 1 HETATM 5 C C5B LMT . . . I 4 -17.507 -17.3 12.037 1 39.55 ? C5B LMT 408 B 1 HETATM 6 C C6B LMT . . . I 4 -18.656 -17.869 11.257 1 37.83 ? C6B LMT 408 B 1 HETATM 7 O O1B LMT . . . I 4 -15.461 -15.392 12.66 1 40.8 ? O1B LMT 408 B 1 HETATM 8 O O2B LMT . . . I 4 -15.664 -15.51 15.394 1 31.05 ? O2B LMT 408 B 1 HETATM 9 O O3B LMT . . . I 4 -16.281 -18.243 15.486 1 39.49 ? O3B LMT 408 B 1 HETATM 10 O O4' LMT . . . I 4 -16.892 -19.46 12.974 1 32.25 ? O4' LMT 408 B 1 HETATM 11 O O5B LMT . . . I 4 -17.74 -15.856 12.308 1 35.47 ? O5B LMT 408 B 1 HETATM 12 O O6B LMT . . . I 4 -19.871 -17.377 11.754 1 38.4 ? O6B LMT 408 B 1 HETATM 13 C C1' LMT . . . I 4 -12.911 -12.496 10.921 1 50.71 ? C1' LMT 408 B 1 HETATM 14 C C2' LMT . . . I 4 -13.503 -12.222 12.296 1 51.52 ? C2' LMT 408 B 1 HETATM 15 C C3' LMT . . . I 4 -14.043 -13.469 12.931 1 42.64 ? C3' LMT 408 B 1 HETATM 16 C C4' LMT . . . I 4 -15.031 -14.164 12.04 1 45.49 ? C4' LMT 408 B 1 HETATM 17 C C5' LMT . . . I 4 -14.316 -14.459 10.721 1 46.99 ? C5' LMT 408 B 1 HETATM 18 C C6' LMT . . . I 4 -15.113 -15.21 9.71 1 38.61 ? C6' LMT 408 B 1 HETATM 19 O O1' LMT . . . I 4 -12.566 -11.321 10.278 1 50.69 ? O1' LMT 408 B 1 HETATM 20 O O2' LMT . . . I 4 -12.488 -11.673 13.148 1 39.31 ? O2' LMT 408 B 1 HETATM 21 O O3' LMT . . . I 4 -14.629 -13.121 14.217 1 37.31 ? O3' LMT 408 B 1 HETATM 22 O O5' LMT . . . I 4 -13.908 -13.201 10.07 1 41.3 ? O5' LMT 408 B 1 HETATM 23 O O6' LMT . . . I 4 -14.178 -15.615 8.745 1 39.13 ? O6' LMT 408 B 1 HETATM 24 C C1 LMT . . . I 4 -11.867 -11.532 9.047 1 42.05 ? C1 LMT 408 B 1 HETATM 25 C C2 LMT . . . I 4 -11.018 -10.266 8.707 1 44.75 ? C2 LMT 408 B 1 HETATM 26 C C3 LMT . . . I 4 -11.977 -9.046 8.526 1 34.25 ? C3 LMT 408 B 1 HETATM 27 C C4 LMT . . . I 4 -13.072 -9.419 7.49 1 42.39 ? C4 LMT 408 B 1 HETATM 28 C C5 LMT . . . I 4 -14.106 -8.255 7.418 1 40.18 ? C5 LMT 408 B 1 HETATM 29 C C6 LMT . . . I 4 -14.35 -7.905 5.921 1 41.04 ? C6 LMT 408 B 1 HETATM 30 C C7 LMT . . . I 4 -15.382 -6.746 5.894 1 45.92 ? C7 LMT 408 B 1 HETATM 31 C C8 LMT . . . I 4 -16.244 -6.816 4.604 1 29.92 ? C8 LMT 408 B 1 HETATM 32 C C9 LMT . . . I 4 -17.408 -5.808 4.797 1 51.57 ? C9 LMT 408 B 1 HETATM 33 C C10 LMT . . . I 4 -17.063 -4.397 4.245 1 54.97 ? C10 LMT 408 B 1 HETATM 34 C C11 LMT . . . I 4 -17.004 -3.371 5.401 1 52.61 ? C11 LMT 408 B 1 HETATM 35 C C12 LMT . . . I 4 -18.404 -3.121 5.959 1 38.98 ? C12 LMT 408 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #