data_5KNK
#
_model_server_result.job_id            zlATekSkiFNwuap-pCEcsQ 
_model_server_result.datetime_utc      '2024-11-22 03:02:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5knk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":409}' 
#
_entry.id    5KNK 
#
_exptl.entry_id    5KNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KNK 
_cell.length_a            59.3 
_cell.length_b            145.47 
_cell.length_c            87.61 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 241 n n 
C1B O1B LMT sing 242 n n 
C1B O5B LMT sing 243 n n 
C1B H1B LMT sing 244 n n 
C2B C3B LMT sing 245 n n 
C2B O2B LMT sing 246 n n 
C2B H2B LMT sing 247 n n 
C3B C4B LMT sing 248 n n 
C3B O3B LMT sing 249 n n 
C3B H3B LMT sing 250 n n 
C4B C5B LMT sing 251 n n 
C4B O4' LMT sing 252 n n 
C4B H4B LMT sing 253 n n 
C5B C6B LMT sing 254 n n 
C5B O5B LMT sing 255 n n 
C5B H5B LMT sing 256 n n 
C6B O6B LMT sing 257 n n 
C6B "H6'2" LMT sing 258 n n 
C6B "H6'1" LMT sing 259 n n 
O1B C4' LMT sing 260 n n 
O2B H2O1 LMT sing 261 n n 
O3B H3O1 LMT sing 262 n n 
O4' H4O1 LMT sing 263 n n 
O6B H6B LMT sing 264 n n 
C1' C2' LMT sing 265 n n 
C1' O1' LMT sing 266 n n 
C1' O5' LMT sing 267 n n 
C1' H1' LMT sing 268 n n 
C2' C3' LMT sing 269 n n 
C2' O2' LMT sing 270 n n 
C2' H2' LMT sing 271 n n 
C3' C4' LMT sing 272 n n 
C3' O3' LMT sing 273 n n 
C3' H3' LMT sing 274 n n 
C4' C5' LMT sing 275 n n 
C4' H4' LMT sing 276 n n 
C5' C6' LMT sing 277 n n 
C5' O5' LMT sing 278 n n 
C5' H5' LMT sing 279 n n 
C6' O6' LMT sing 280 n n 
C6' H6D LMT sing 281 n n 
C6' H6E LMT sing 282 n n 
O1' C1 LMT sing 283 n n 
O2' H2O2 LMT sing 284 n n 
O3' H3O2 LMT sing 285 n n 
O6' H6' LMT sing 286 n n 
C1 C2 LMT sing 287 n n 
C1 H12 LMT sing 288 n n 
C1 H11 LMT sing 289 n n 
C2 C3 LMT sing 290 n n 
C2 H22 LMT sing 291 n n 
C2 H21 LMT sing 292 n n 
C3 C4 LMT sing 293 n n 
C3 H32 LMT sing 294 n n 
C3 H31 LMT sing 295 n n 
C4 C5 LMT sing 296 n n 
C4 H42 LMT sing 297 n n 
C4 H41 LMT sing 298 n n 
C5 C6 LMT sing 299 n n 
C5 H52 LMT sing 300 n n 
C5 H51 LMT sing 301 n n 
C6 C7 LMT sing 302 n n 
C6 H62 LMT sing 303 n n 
C6 H61 LMT sing 304 n n 
C7 C8 LMT sing 305 n n 
C7 H72 LMT sing 306 n n 
C7 H71 LMT sing 307 n n 
C8 C9 LMT sing 308 n n 
C8 H82 LMT sing 309 n n 
C8 H81 LMT sing 310 n n 
C9 C10 LMT sing 311 n n 
C9 H92 LMT sing 312 n n 
C9 H91 LMT sing 313 n n 
C10 C11 LMT sing 314 n n 
C10 H102 LMT sing 315 n n 
C10 H101 LMT sing 316 n n 
C11 C12 LMT sing 317 n n 
C11 H112 LMT sing 318 n n 
C11 H111 LMT sing 319 n n 
C12 H123 LMT sing 320 n n 
C12 H122 LMT sing 321 n n 
C12 H121 LMT sing 322 n n 
#
_atom_sites.entry_id                     5KNK 
_atom_sites.fract_transf_matrix[1][1]    0.016863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011414 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 B 1 401 1 SO4 SO4 . 
C 2 SO4 B 1 402 2 SO4 SO4 . 
D 2 SO4 B 1 403 3 SO4 SO4 . 
E 2 SO4 B 1 404 7 SO4 SO4 . 
F 3 GOL B 1 405 1 GOL GOL . 
G 3 GOL B 1 406 2 GOL GOL . 
H 3 GOL B 1 407 3 GOL GOL . 
I 4 LMT B 1 408 1 LMT LMT . 
J 4 LMT B 1 409 2 LMT LMT . 
K 5 11A B 1 410 1 11A MYA . 
L 6 HOH B 1 501 110 HOH HOH . 
L 6 HOH B 2 502 93 HOH HOH . 
L 6 HOH B 3 503 76 HOH HOH . 
L 6 HOH B 4 504 82 HOH HOH . 
L 6 HOH B 5 505 58 HOH HOH . 
L 6 HOH B 6 506 18 HOH HOH . 
L 6 HOH B 7 507 22 HOH HOH . 
L 6 HOH B 8 508 106 HOH HOH . 
L 6 HOH B 9 509 36 HOH HOH . 
L 6 HOH B 10 510 7 HOH HOH . 
L 6 HOH B 11 511 90 HOH HOH . 
L 6 HOH B 12 512 65 HOH HOH . 
L 6 HOH B 13 513 77 HOH HOH . 
L 6 HOH B 14 514 8 HOH HOH . 
L 6 HOH B 15 515 41 HOH HOH . 
L 6 HOH B 16 516 89 HOH HOH . 
L 6 HOH B 17 517 70 HOH HOH . 
L 6 HOH B 18 518 52 HOH HOH . 
L 6 HOH B 19 519 115 HOH HOH . 
L 6 HOH B 20 520 16 HOH HOH . 
L 6 HOH B 21 521 30 HOH HOH . 
L 6 HOH B 22 522 98 HOH HOH . 
L 6 HOH B 23 523 81 HOH HOH . 
L 6 HOH B 24 524 103 HOH HOH . 
L 6 HOH B 25 525 84 HOH HOH . 
L 6 HOH B 26 526 72 HOH HOH . 
L 6 HOH B 27 527 102 HOH HOH . 
L 6 HOH B 28 528 112 HOH HOH . 
L 6 HOH B 29 529 74 HOH HOH . 
L 6 HOH B 30 530 37 HOH HOH . 
L 6 HOH B 31 531 101 HOH HOH . 
L 6 HOH B 32 532 17 HOH HOH . 
L 6 HOH B 33 533 75 HOH HOH . 
L 6 HOH B 34 534 63 HOH HOH . 
L 6 HOH B 35 535 73 HOH HOH . 
L 6 HOH B 36 536 111 HOH HOH . 
L 6 HOH B 37 537 25 HOH HOH . 
L 6 HOH B 38 538 119 HOH HOH . 
L 6 HOH B 39 539 83 HOH HOH . 
L 6 HOH B 40 540 55 HOH HOH . 
L 6 HOH B 41 541 116 HOH HOH . 
L 6 HOH B 42 542 88 HOH HOH . 
L 6 HOH B 43 543 107 HOH HOH . 
L 6 HOH B 44 544 62 HOH HOH . 
L 6 HOH B 45 545 12 HOH HOH . 
L 6 HOH B 46 546 4 HOH HOH . 
L 6 HOH B 47 547 1 HOH HOH . 
L 6 HOH B 48 548 2 HOH HOH . 
L 6 HOH B 49 549 23 HOH HOH . 
L 6 HOH B 50 550 104 HOH HOH . 
L 6 HOH B 51 551 14 HOH HOH . 
L 6 HOH B 52 552 71 HOH HOH . 
L 6 HOH B 53 553 33 HOH HOH . 
L 6 HOH B 54 554 108 HOH HOH . 
L 6 HOH B 55 555 44 HOH HOH . 
L 6 HOH B 56 556 27 HOH HOH . 
L 6 HOH B 57 557 67 HOH HOH . 
L 6 HOH B 58 558 28 HOH HOH . 
L 6 HOH B 59 559 105 HOH HOH . 
L 6 HOH B 60 560 5 HOH HOH . 
L 6 HOH B 61 561 53 HOH HOH . 
L 6 HOH B 62 562 91 HOH HOH . 
L 6 HOH B 63 563 24 HOH HOH . 
L 6 HOH B 64 564 92 HOH HOH . 
L 6 HOH B 65 565 117 HOH HOH . 
L 6 HOH B 66 566 114 HOH HOH . 
L 6 HOH B 67 567 26 HOH HOH . 
L 6 HOH B 68 568 109 HOH HOH . 
L 6 HOH B 69 569 13 HOH HOH . 
L 6 HOH B 70 570 121 HOH HOH . 
L 6 HOH B 71 571 49 HOH HOH . 
L 6 HOH B 72 572 118 HOH HOH . 
L 6 HOH B 73 573 51 HOH HOH . 
L 6 HOH B 74 574 48 HOH HOH . 
L 6 HOH B 75 575 3 HOH HOH . 
L 6 HOH B 76 576 38 HOH HOH . 
L 6 HOH B 77 577 56 HOH HOH . 
L 6 HOH B 78 578 42 HOH HOH . 
L 6 HOH B 79 579 113 HOH HOH . 
L 6 HOH B 80 580 45 HOH HOH . 
L 6 HOH B 81 581 15 HOH HOH . 
L 6 HOH B 82 582 61 HOH HOH . 
L 6 HOH B 83 583 94 HOH HOH . 
L 6 HOH B 84 584 120 HOH HOH . 
L 6 HOH B 85 585 96 HOH HOH . 
L 6 HOH B 86 586 66 HOH HOH . 
L 6 HOH B 87 587 64 HOH HOH . 
L 6 HOH B 88 588 95 HOH HOH . 
L 6 HOH B 89 589 97 HOH HOH . 
L 6 HOH B 90 590 54 HOH HOH . 
L 6 HOH B 91 591 6 HOH HOH . 
L 6 HOH B 92 592 47 HOH HOH . 
L 6 HOH B 93 593 57 HOH HOH . 
L 6 HOH B 94 594 29 HOH HOH . 
L 6 HOH B 95 595 100 HOH HOH . 
L 6 HOH B 96 596 46 HOH HOH . 
L 6 HOH B 97 597 60 HOH HOH . 
L 6 HOH B 98 598 59 HOH HOH . 
L 6 HOH B 99 599 50 HOH HOH . 
L 6 HOH B 100 600 43 HOH HOH . 
L 6 HOH B 101 601 86 HOH HOH . 
L 6 HOH B 102 602 99 HOH HOH . 
L 6 HOH B 103 603 85 HOH HOH . 
L 6 HOH B 104 604 78 HOH HOH . 
L 6 HOH B 105 605 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . J 4 -9.112 -17.324 13.853 0.67 41.18 ? C1B LMT 409 B 1 
HETATM 2 C C2B LMT . . . J 4 -10.368 -16.784 13.172 0.67 44.53 ? C2B LMT 409 B 1 
HETATM 3 C C3B LMT . . . J 4 -11.641 -17.259 13.784 0.67 51.09 ? C3B LMT 409 B 1 
HETATM 4 C C4B LMT . . . J 4 -11.679 -18.73 14.096 0.67 44.02 ? C4B LMT 409 B 1 
HETATM 5 C C5B LMT . . . J 4 -10.4 -19.303 14.71 0.67 43.67 ? C5B LMT 409 B 1 
HETATM 6 C C6B LMT . . . J 4 -10.457 -20.807 14.625 0.67 41.56 ? C6B LMT 409 B 1 
HETATM 7 O O1B LMT . . . J 4 -8.729 -16.695 15 0.67 43.03 ? O1B LMT 409 B 1 
HETATM 8 O O2B LMT . . . J 4 -10.316 -15.339 13.106 0.67 53.55 ? O2B LMT 409 B 1 
HETATM 9 O O3B LMT . . . J 4 -12.679 -16.996 12.796 0.67 46.85 ? O3B LMT 409 B 1 
HETATM 10 O O4' LMT . . . J 4 -12.728 -18.996 15.037 0.67 55.57 ? O4' LMT 409 B 1 
HETATM 11 O O5B LMT . . . J 4 -9.168 -18.817 14.059 0.67 43.24 ? O5B LMT 409 B 1 
HETATM 12 O O6B LMT . . . J 4 -11.049 -21.255 13.427 0.67 37.79 ? O6B LMT 409 B 1 
HETATM 13 C C1' LMT . . . J 4 -4.611 -16.034 15.765 0.67 47.32 ? C1' LMT 409 B 1 
HETATM 14 C C2' LMT . . . J 4 -5.31 -15.181 14.716 0.67 45.54 ? C2' LMT 409 B 1 
HETATM 15 C C3' LMT . . . J 4 -6.802 -15.261 14.815 0.67 44.81 ? C3' LMT 409 B 1 
HETATM 16 C C4' LMT . . . J 4 -7.286 -16.674 14.909 0.67 41.05 ? C4' LMT 409 B 1 
HETATM 17 C C5' LMT . . . J 4 -6.614 -17.337 16.113 0.67 45.85 ? C5' LMT 409 B 1 
HETATM 18 C C6' LMT . . . J 4 -7.28 -18.615 16.585 0.67 43.51 ? C6' LMT 409 B 1 
HETATM 19 O O1' LMT . . . J 4 -3.231 -15.97 15.584 0.67 48.24 ? O1' LMT 409 B 1 
HETATM 20 O O2' LMT . . . J 4 -4.908 -13.817 14.917 0.67 51.03 ? O2' LMT 409 B 1 
HETATM 21 O O3' LMT . . . J 4 -7.382 -14.596 13.663 0.67 46.86 ? O3' LMT 409 B 1 
HETATM 22 O O5' LMT . . . J 4 -5.15 -17.44 15.849 0.67 43.22 ? O5' LMT 409 B 1 
HETATM 23 O O6' LMT . . . J 4 -7.165 -19.737 15.742 0.67 34.6 ? O6' LMT 409 B 1 
HETATM 24 C C1 LMT . . . J 4 -2.67 -16.272 14.3 0.67 33.7 ? C1 LMT 409 B 1 
HETATM 25 C C2 LMT . . . J 4 -1.693 -17.445 14.605 0.67 29.53 ? C2 LMT 409 B 1 
HETATM 26 C C3 LMT . . . J 4 -0.901 -18.071 13.395 0.67 16.47 ? C3 LMT 409 B 1 
HETATM 27 C C4 LMT . . . J 4 0.499 -18.465 13.94 0.67 26.95 ? C4 LMT 409 B 1 
HETATM 28 C C5 LMT . . . J 4 0.475 -18.389 15.512 0.67 21.28 ? C5 LMT 409 B 1 
HETATM 29 C C6 LMT . . . J 4 1.885 -18.26 16.132 0.67 30.04 ? C6 LMT 409 B 1 
HETATM 30 C C7 LMT . . . J 4 2.175 -19.412 17.14 0.67 22.65 ? C7 LMT 409 B 1 
HETATM 31 C C8 LMT . . . J 4 0.9 -19.837 17.891 0.67 26.94 ? C8 LMT 409 B 1 
HETATM 32 C C9 LMT . . . J 4 1.106 -21.315 18.301 0.67 25.54 ? C9 LMT 409 B 1 
HETATM 33 C C10 LMT . . . J 4 0.769 -21.426 19.792 0.67 19.25 ? C10 LMT 409 B 1 
HETATM 34 C C11 LMT . . . J 4 -0.729 -21.715 19.914 0.67 30.95 ? C11 LMT 409 B 1 
HETATM 35 C C12 LMT . . . J 4 -1.205 -21.26 21.283 0.67 30.44 ? C12 LMT 409 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           35 
#