data_5KNN # _model_server_result.job_id JTRsNW2fBzMnTH63tTYjUg _model_server_result.datetime_utc '2024-12-26 18:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5knn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":500}' # _entry.id 5KNN # _exptl.entry_id 5KNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.398 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.07 _cell.angle_beta 89.95 _cell.angle_gamma 90.11 _cell.entry_id 5KNN _cell.length_a 52.167 _cell.length_b 98.26 _cell.length_c 201.385 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I 1 1 B,J 2 1 C,K 3 1 D,L 4 1 E,M 5 1 F,N 6 1 G,O 7 1 H,P 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C13 H19 N7 O7 S' _chem_comp.formula_weight 417.398 _chem_comp.id A5A _chem_comp.mon_nstd_flag . _chem_comp.name "'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA A5A sing 1 n n N H A5A sing 2 n n N HN2 A5A sing 3 n n CA CB A5A sing 4 n n CA C A5A sing 5 n n CA HA A5A sing 6 n n CB HB1 A5A sing 7 n n CB HB2 A5A sing 8 n n CB HB3 A5A sing 9 n n C O A5A doub 10 n n C N3S A5A sing 11 n n N3S S A5A sing 12 n n N3S H3S A5A sing 13 n n S O1S A5A doub 14 n n S O2S A5A doub 15 n n S O5' A5A sing 16 n n O5' C5' A5A sing 17 n n C5' C4' A5A sing 18 n n C5' "H5'1" A5A sing 19 n n C5' "H5'2" A5A sing 20 n n C4' O4' A5A sing 21 n n C4' C3' A5A sing 22 n n C4' H4' A5A sing 23 n n O4' C1' A5A sing 24 n n C3' O3' A5A sing 25 n n C3' C2' A5A sing 26 n n C3' H3' A5A sing 27 n n O3' H3T A5A sing 28 n n C2' O2' A5A sing 29 n n C2' C1' A5A sing 30 n n C2' H2' A5A sing 31 n n O2' "HO'2" A5A sing 32 n n C1' N9 A5A sing 33 n n C1' H1' A5A sing 34 n n N9 C8 A5A sing 35 n y N9 C4 A5A sing 36 n y C8 N7 A5A doub 37 n y C8 H8 A5A sing 38 n n N7 C5 A5A sing 39 n y C5 C6 A5A doub 40 n y C5 C4 A5A sing 41 n y C6 N6 A5A sing 42 n n C6 N1 A5A sing 43 n y N6 H61 A5A sing 44 n n N6 H62 A5A sing 45 n n N1 C2 A5A doub 46 n y C2 N3 A5A sing 47 n y C2 H2 A5A sing 48 n n N3 C4 A5A doub 49 n y # _atom_sites.entry_id 5KNN _atom_sites.fract_transf_matrix[1][1] 0.019169 _atom_sites.fract_transf_matrix[1][2] 0.000036 _atom_sites.fract_transf_matrix[1][3] -0.000016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010177 _atom_sites.fract_transf_matrix[2][3] 0.000013 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 A5A A 1 500 500 A5A A5A . J 2 A5A B 1 500 500 A5A A5A . K 2 A5A C 1 500 500 A5A A5A . L 2 A5A D 1 500 500 A5A A5A . M 2 A5A E 1 500 500 A5A A5A . N 2 A5A F 1 500 500 A5A A5A . O 2 A5A G 1 500 500 A5A A5A . P 2 A5A H 1 500 500 A5A A5A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N A5A . . . I 2 -0.603 0.556 -11.2 1 43.97 ? N A5A 500 A 1 HETATM 2 C CA A5A . . . I 2 -1.303 -0.71 -11.08 1 44.69 ? CA A5A 500 A 1 HETATM 3 C CB A5A . . . I 2 -0.282 -1.813 -11.4 1 47.78 ? CB A5A 500 A 1 HETATM 4 C C A5A . . . I 2 -1.838 -0.854 -9.669 1 41.59 ? C A5A 500 A 1 HETATM 5 O O A5A . . . I 2 -1.825 0.116 -8.947 1 42.3 ? O A5A 500 A 1 HETATM 6 N N3S A5A . . . I 2 -2.285 -2.065 -9.266 1 39.24 ? N3S A5A 500 A 1 HETATM 7 S S A5A . . . I 2 -2.833 -2.448 -7.792 1 34.02 ? S A5A 500 A 1 HETATM 8 O O1S A5A . . . I 2 -3.817 -1.521 -7.318 1 37.41 ? O1S A5A 500 A 1 HETATM 9 O O2S A5A . . . I 2 -3.629 -3.672 -7.798 1 42.57 ? O2S A5A 500 A 1 HETATM 10 O O5' A5A . . . I 2 -1.691 -2.719 -6.837 1 32.1 ? O5' A5A 500 A 1 HETATM 11 C C5' A5A . . . I 2 -0.513 -3.276 -7.402 1 32.72 ? C5' A5A 500 A 1 HETATM 12 C C4' A5A . . . I 2 0.202 -3.988 -6.288 1 34.17 ? C4' A5A 500 A 1 HETATM 13 O O4' A5A . . . I 2 0.197 -3.1 -5.171 1 34.94 ? O4' A5A 500 A 1 HETATM 14 C C3' A5A . . . I 2 -0.577 -5.165 -5.712 1 37.31 ? C3' A5A 500 A 1 HETATM 15 O O3' A5A . . . I 2 -0.049 -6.392 -6.168 1 36.56 ? O3' A5A 500 A 1 HETATM 16 C C2' A5A . . . I 2 -0.327 -5.178 -4.226 1 36.11 ? C2' A5A 500 A 1 HETATM 17 O O2' A5A . . . I 2 0.752 -6.048 -3.942 1 39.29 ? O2' A5A 500 A 1 HETATM 18 C C1' A5A . . . I 2 0.15 -3.794 -3.928 1 33.66 ? C1' A5A 500 A 1 HETATM 19 N N9 A5A . . . I 2 -0.785 -3.17 -3.003 1 32.12 ? N9 A5A 500 A 1 HETATM 20 C C8 A5A . . . I 2 -1.943 -2.592 -3.342 1 31.97 ? C8 A5A 500 A 1 HETATM 21 N N7 A5A . . . I 2 -2.523 -2.082 -2.217 1 32.93 ? N7 A5A 500 A 1 HETATM 22 C C5 A5A . . . I 2 -1.718 -2.351 -1.152 1 29.95 ? C5 A5A 500 A 1 HETATM 23 C C6 A5A . . . I 2 -1.713 -2.119 0.306 1 30.01 ? C6 A5A 500 A 1 HETATM 24 N N6 A5A . . . I 2 -2.692 -1.483 0.966 1 33.21 ? N6 A5A 500 A 1 HETATM 25 N N1 A5A . . . I 2 -0.681 -2.551 1.04 1 28.52 ? N1 A5A 500 A 1 HETATM 26 C C2 A5A . . . I 2 0.358 -3.167 0.516 1 29.41 ? C2 A5A 500 A 1 HETATM 27 N N3 A5A . . . I 2 0.414 -3.424 -0.794 1 32.6 ? N3 A5A 500 A 1 HETATM 28 C C4 A5A . . . I 2 -0.565 -3.061 -1.674 1 30.78 ? C4 A5A 500 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #