data_5KNN
#
_model_server_result.job_id            1ZT04_wAK2aH0CHZ278wYA 
_model_server_result.datetime_utc      '2024-12-26 18:38:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5knn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":500}' 
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_entry.id    5KNN 
#
_exptl.entry_id    5KNN 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              417.398 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.07 
_cell.angle_beta          89.95 
_cell.angle_gamma         90.11 
_cell.entry_id            5KNN 
_cell.length_a            52.167 
_cell.length_b            98.26 
_cell.length_c            201.385 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KNN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I 1 1 
B,J 2 1 
C,K 3 1 
D,L 4 1 
E,M 5 1 
F,N 6 1 
G,O 7 1 
H,P 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C13 H19 N7 O7 S' 
_chem_comp.formula_weight    417.398 
_chem_comp.id                A5A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA A5A sing 1 n n 
N H A5A sing 2 n n 
N HN2 A5A sing 3 n n 
CA CB A5A sing 4 n n 
CA C A5A sing 5 n n 
CA HA A5A sing 6 n n 
CB HB1 A5A sing 7 n n 
CB HB2 A5A sing 8 n n 
CB HB3 A5A sing 9 n n 
C O A5A doub 10 n n 
C N3S A5A sing 11 n n 
N3S S A5A sing 12 n n 
N3S H3S A5A sing 13 n n 
S O1S A5A doub 14 n n 
S O2S A5A doub 15 n n 
S O5' A5A sing 16 n n 
O5' C5' A5A sing 17 n n 
C5' C4' A5A sing 18 n n 
C5' "H5'1" A5A sing 19 n n 
C5' "H5'2" A5A sing 20 n n 
C4' O4' A5A sing 21 n n 
C4' C3' A5A sing 22 n n 
C4' H4' A5A sing 23 n n 
O4' C1' A5A sing 24 n n 
C3' O3' A5A sing 25 n n 
C3' C2' A5A sing 26 n n 
C3' H3' A5A sing 27 n n 
O3' H3T A5A sing 28 n n 
C2' O2' A5A sing 29 n n 
C2' C1' A5A sing 30 n n 
C2' H2' A5A sing 31 n n 
O2' "HO'2" A5A sing 32 n n 
C1' N9 A5A sing 33 n n 
C1' H1' A5A sing 34 n n 
N9 C8 A5A sing 35 n y 
N9 C4 A5A sing 36 n y 
C8 N7 A5A doub 37 n y 
C8 H8 A5A sing 38 n n 
N7 C5 A5A sing 39 n y 
C5 C6 A5A doub 40 n y 
C5 C4 A5A sing 41 n y 
C6 N6 A5A sing 42 n n 
C6 N1 A5A sing 43 n y 
N6 H61 A5A sing 44 n n 
N6 H62 A5A sing 45 n n 
N1 C2 A5A doub 46 n y 
C2 N3 A5A sing 47 n y 
C2 H2 A5A sing 48 n n 
N3 C4 A5A doub 49 n y 
#
_atom_sites.entry_id                     5KNN 
_atom_sites.fract_transf_matrix[1][1]    0.019169 
_atom_sites.fract_transf_matrix[1][2]    0.000036 
_atom_sites.fract_transf_matrix[1][3]    -0.000016 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010177 
_atom_sites.fract_transf_matrix[2][3]    0.000013 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004966 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 A5A A 1 500 500 A5A A5A . 
J 2 A5A B 1 500 500 A5A A5A . 
K 2 A5A C 1 500 500 A5A A5A . 
L 2 A5A D 1 500 500 A5A A5A . 
M 2 A5A E 1 500 500 A5A A5A . 
N 2 A5A F 1 500 500 A5A A5A . 
O 2 A5A G 1 500 500 A5A A5A . 
P 2 A5A H 1 500 500 A5A A5A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N A5A . . . M 2 22.841 1.39 89.354 1 39.76 ? N A5A 500 E 1 
HETATM 2 C CA A5A . . . M 2 23.43 2.691 89.666 1 46.44 ? CA A5A 500 E 1 
HETATM 3 C CB A5A . . . M 2 22.42 3.827 89.413 1 44.92 ? CB A5A 500 E 1 
HETATM 4 C C A5A . . . M 2 23.889 2.797 91.125 1 50.95 ? C A5A 500 E 1 
HETATM 5 O O A5A . . . M 2 23.889 1.775 91.812 1 63.72 ? O A5A 500 E 1 
HETATM 6 N N3S A5A . . . M 2 24.279 4.037 91.55 1 43.03 ? N3S A5A 500 E 1 
HETATM 7 S S A5A . . . M 2 24.79 4.5 93.017 1 41.9 ? S A5A 500 E 1 
HETATM 8 O O1S A5A . . . M 2 25.714 3.589 93.638 1 46.03 ? O1S A5A 500 E 1 
HETATM 9 O O2S A5A . . . M 2 25.49 5.769 92.917 1 35.57 ? O2S A5A 500 E 1 
HETATM 10 O O5' A5A . . . M 2 23.587 4.71 93.959 1 31.53 ? O5' A5A 500 E 1 
HETATM 11 C C5' A5A . . . M 2 22.424 5.235 93.378 1 28.01 ? C5' A5A 500 E 1 
HETATM 12 C C4' A5A . . . M 2 21.706 6.074 94.393 1 25.88 ? C4' A5A 500 E 1 
HETATM 13 O O4' A5A . . . M 2 21.528 5.244 95.519 1 23.6 ? O4' A5A 500 E 1 
HETATM 14 C C3' A5A . . . M 2 22.49 7.319 94.858 1 25.35 ? C3' A5A 500 E 1 
HETATM 15 O O3' A5A . . . M 2 21.619 8.408 94.759 1 22.43 ? O3' A5A 500 E 1 
HETATM 16 C C2' A5A . . . M 2 22.748 7.138 96.337 1 24.47 ? C2' A5A 500 E 1 
HETATM 17 O O2' A5A . . . M 2 22.415 8.257 97.128 1 21.63 ? O2' A5A 500 E 1 
HETATM 18 C C1' A5A . . . M 2 21.794 5.959 96.71 1 24.03 ? C1' A5A 500 E 1 
HETATM 19 N N9 A5A . . . M 2 22.585 5.193 97.643 1 21.61 ? N9 A5A 500 E 1 
HETATM 20 C C8 A5A . . . M 2 23.697 4.493 97.293 1 21.88 ? C8 A5A 500 E 1 
HETATM 21 N N7 A5A . . . M 2 24.238 3.968 98.393 1 23.19 ? N7 A5A 500 E 1 
HETATM 22 C C5 A5A . . . M 2 23.492 4.378 99.465 1 22.67 ? C5 A5A 500 E 1 
HETATM 23 C C6 A5A . . . M 2 23.506 4.183 100.957 1 23.71 ? C6 A5A 500 E 1 
HETATM 24 N N6 A5A . . . M 2 24.405 3.408 101.645 1 26.17 ? N6 A5A 500 E 1 
HETATM 25 N N1 A5A . . . M 2 22.545 4.755 101.7 1 21.09 ? N1 A5A 500 E 1 
HETATM 26 C C2 A5A . . . M 2 21.608 5.491 101.122 1 23.71 ? C2 A5A 500 E 1 
HETATM 27 N N3 A5A . . . M 2 21.534 5.705 99.792 1 23.59 ? N3 A5A 500 E 1 
HETATM 28 C C4 A5A . . . M 2 22.414 5.201 98.933 1 20.89 ? C4 A5A 500 E 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#