data_5KNS # _model_server_result.job_id 4b6OgLyjETtxQzs_ZHrJpw _model_server_result.datetime_utc '2024-12-29 08:22:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kns # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5KNS # _exptl.entry_id 5KNS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KNS _cell.length_a 84.411 _cell.length_b 84.411 _cell.length_c 167.14 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KNS _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -111.426667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 103 A GLU 103 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 A OE2 GLU 103 A GLU 103 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 A OD1 ASP 104 A ASP 104 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 C OAU 3L7 . A 3L7 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 D MG MG . A MG 202 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 B OE1 GLU 103 B GLU 103 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc7 B OE2 GLU 103 B GLU 103 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc8 B OD1 ASP 104 B ASP 104 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc9 F OAU 3L7 . B 3L7 201 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc10 G MG MG . B MG 202 1_555 J O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc11 G MG MG . B MG 202 1_555 J O HOH . B HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 133 n n N1 C6 EPE sing 134 n n N1 C9 EPE sing 135 n n C2 C3 EPE sing 136 n n C2 H21 EPE sing 137 n n C2 H22 EPE sing 138 n n C3 N4 EPE sing 139 n n C3 H31 EPE sing 140 n n C3 H32 EPE sing 141 n n N4 C5 EPE sing 142 n n N4 C7 EPE sing 143 n n C5 C6 EPE sing 144 n n C5 H51 EPE sing 145 n n C5 H52 EPE sing 146 n n C6 H61 EPE sing 147 n n C6 H62 EPE sing 148 n n C7 C8 EPE sing 149 n n C7 H71 EPE sing 150 n n C7 H72 EPE sing 151 n n C8 O8 EPE sing 152 n n C8 H81 EPE sing 153 n n C8 H82 EPE sing 154 n n O8 HO8 EPE sing 155 n n C9 C10 EPE sing 156 n n C9 H91 EPE sing 157 n n C9 H92 EPE sing 158 n n C10 S EPE sing 159 n n C10 H101 EPE sing 160 n n C10 H102 EPE sing 161 n n S O1S EPE doub 162 n n S O2S EPE doub 163 n n S O3S EPE sing 164 n n O3S HOS3 EPE sing 165 n n # _atom_sites.entry_id 5KNS _atom_sites.fract_transf_matrix[1][1] 0.011847 _atom_sites.fract_transf_matrix[1][2] 0.00684 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3L7 A 1 201 1 3L7 DRG . D 3 MG A 1 202 1 MG MG . E 4 EPE A 1 203 2 EPE EPE . F 2 3L7 B 1 201 2 3L7 DRG . G 3 MG B 1 202 2 MG MG . H 4 EPE B 1 203 1 EPE EPE . I 5 HOH A 1 301 23 HOH HOH . I 5 HOH A 2 302 168 HOH HOH . I 5 HOH A 3 303 49 HOH HOH . I 5 HOH A 4 304 94 HOH HOH . I 5 HOH A 5 305 101 HOH HOH . I 5 HOH A 6 306 33 HOH HOH . I 5 HOH A 7 307 1 HOH HOH . I 5 HOH A 8 308 112 HOH HOH . I 5 HOH A 9 309 39 HOH HOH . I 5 HOH A 10 310 10 HOH HOH . I 5 HOH A 11 311 161 HOH HOH . I 5 HOH A 12 312 93 HOH HOH . I 5 HOH A 13 313 133 HOH HOH . I 5 HOH A 14 314 9 HOH HOH . I 5 HOH A 15 315 153 HOH HOH . I 5 HOH A 16 316 3 HOH HOH . I 5 HOH A 17 317 2 HOH HOH . I 5 HOH A 18 318 77 HOH HOH . I 5 HOH A 19 319 5 HOH HOH . I 5 HOH A 20 320 113 HOH HOH . I 5 HOH A 21 321 4 HOH HOH . I 5 HOH A 22 322 27 HOH HOH . I 5 HOH A 23 323 74 HOH HOH . I 5 HOH A 24 324 169 HOH HOH . I 5 HOH A 25 325 6 HOH HOH . I 5 HOH A 26 326 148 HOH HOH . I 5 HOH A 27 327 102 HOH HOH . I 5 HOH A 28 328 7 HOH HOH . I 5 HOH A 29 329 104 HOH HOH . I 5 HOH A 30 330 37 HOH HOH . I 5 HOH A 31 331 47 HOH HOH . I 5 HOH A 32 332 43 HOH HOH . I 5 HOH A 33 333 25 HOH HOH . I 5 HOH A 34 334 159 HOH HOH . I 5 HOH A 35 335 87 HOH HOH . I 5 HOH A 36 336 111 HOH HOH . I 5 HOH A 37 337 82 HOH HOH . I 5 HOH A 38 338 36 HOH HOH . I 5 HOH A 39 339 40 HOH HOH . I 5 HOH A 40 340 75 HOH HOH . I 5 HOH A 41 341 80 HOH HOH . I 5 HOH A 42 342 89 HOH HOH . I 5 HOH A 43 343 57 HOH HOH . I 5 HOH A 44 344 50 HOH HOH . I 5 HOH A 45 345 14 HOH HOH . I 5 HOH A 46 346 67 HOH HOH . I 5 HOH A 47 347 78 HOH HOH . I 5 HOH A 48 348 34 HOH HOH . I 5 HOH A 49 349 62 HOH HOH . I 5 HOH A 50 350 122 HOH HOH . I 5 HOH A 51 351 32 HOH HOH . I 5 HOH A 52 352 65 HOH HOH . I 5 HOH A 53 353 170 HOH HOH . I 5 HOH A 54 354 121 HOH HOH . I 5 HOH A 55 355 155 HOH HOH . I 5 HOH A 56 356 24 HOH HOH . I 5 HOH A 57 357 31 HOH HOH . I 5 HOH A 58 358 99 HOH HOH . I 5 HOH A 59 359 131 HOH HOH . I 5 HOH A 60 360 158 HOH HOH . I 5 HOH A 61 361 157 HOH HOH . I 5 HOH A 62 362 108 HOH HOH . I 5 HOH A 63 363 128 HOH HOH . I 5 HOH A 64 364 95 HOH HOH . I 5 HOH A 65 365 54 HOH HOH . I 5 HOH A 66 366 134 HOH HOH . I 5 HOH A 67 367 163 HOH HOH . I 5 HOH A 68 368 35 HOH HOH . I 5 HOH A 69 369 64 HOH HOH . I 5 HOH A 70 370 68 HOH HOH . I 5 HOH A 71 371 106 HOH HOH . I 5 HOH A 72 372 96 HOH HOH . I 5 HOH A 73 373 92 HOH HOH . I 5 HOH A 74 374 63 HOH HOH . I 5 HOH A 75 375 115 HOH HOH . I 5 HOH A 76 376 138 HOH HOH . I 5 HOH A 77 377 117 HOH HOH . I 5 HOH A 78 378 162 HOH HOH . I 5 HOH A 79 379 91 HOH HOH . I 5 HOH A 80 380 136 HOH HOH . I 5 HOH A 81 381 143 HOH HOH . I 5 HOH A 82 382 146 HOH HOH . I 5 HOH A 83 383 151 HOH HOH . I 5 HOH A 84 384 126 HOH HOH . I 5 HOH A 85 385 119 HOH HOH . I 5 HOH A 86 386 154 HOH HOH . I 5 HOH A 87 387 88 HOH HOH . I 5 HOH A 88 388 66 HOH HOH . J 5 HOH B 1 301 84 HOH HOH . J 5 HOH B 2 302 83 HOH HOH . J 5 HOH B 3 303 79 HOH HOH . J 5 HOH B 4 304 124 HOH HOH . J 5 HOH B 5 305 42 HOH HOH . J 5 HOH B 6 306 12 HOH HOH . J 5 HOH B 7 307 41 HOH HOH . J 5 HOH B 8 308 53 HOH HOH . J 5 HOH B 9 309 20 HOH HOH . J 5 HOH B 10 310 123 HOH HOH . J 5 HOH B 11 311 76 HOH HOH . J 5 HOH B 12 312 69 HOH HOH . J 5 HOH B 13 313 30 HOH HOH . J 5 HOH B 14 314 61 HOH HOH . J 5 HOH B 15 315 17 HOH HOH . J 5 HOH B 16 316 45 HOH HOH . J 5 HOH B 17 317 13 HOH HOH . J 5 HOH B 18 318 48 HOH HOH . J 5 HOH B 19 319 11 HOH HOH . J 5 HOH B 20 320 16 HOH HOH . J 5 HOH B 21 321 18 HOH HOH . J 5 HOH B 22 322 19 HOH HOH . J 5 HOH B 23 323 167 HOH HOH . J 5 HOH B 24 324 105 HOH HOH . J 5 HOH B 25 325 44 HOH HOH . J 5 HOH B 26 326 70 HOH HOH . J 5 HOH B 27 327 56 HOH HOH . J 5 HOH B 28 328 132 HOH HOH . J 5 HOH B 29 329 21 HOH HOH . J 5 HOH B 30 330 100 HOH HOH . J 5 HOH B 31 331 166 HOH HOH . J 5 HOH B 32 332 55 HOH HOH . J 5 HOH B 33 333 60 HOH HOH . J 5 HOH B 34 334 144 HOH HOH . J 5 HOH B 35 335 22 HOH HOH . J 5 HOH B 36 336 137 HOH HOH . J 5 HOH B 37 337 164 HOH HOH . J 5 HOH B 38 338 110 HOH HOH . J 5 HOH B 39 339 73 HOH HOH . J 5 HOH B 40 340 152 HOH HOH . J 5 HOH B 41 341 139 HOH HOH . J 5 HOH B 42 342 90 HOH HOH . J 5 HOH B 43 343 127 HOH HOH . J 5 HOH B 44 344 59 HOH HOH . J 5 HOH B 45 345 149 HOH HOH . J 5 HOH B 46 346 8 HOH HOH . J 5 HOH B 47 347 81 HOH HOH . J 5 HOH B 48 348 129 HOH HOH . J 5 HOH B 49 349 28 HOH HOH . J 5 HOH B 50 350 85 HOH HOH . J 5 HOH B 51 351 97 HOH HOH . J 5 HOH B 52 352 86 HOH HOH . J 5 HOH B 53 353 46 HOH HOH . J 5 HOH B 54 354 109 HOH HOH . J 5 HOH B 55 355 165 HOH HOH . J 5 HOH B 56 356 118 HOH HOH . J 5 HOH B 57 357 15 HOH HOH . J 5 HOH B 58 358 72 HOH HOH . J 5 HOH B 59 359 114 HOH HOH . J 5 HOH B 60 360 160 HOH HOH . J 5 HOH B 61 361 38 HOH HOH . J 5 HOH B 62 362 135 HOH HOH . J 5 HOH B 63 363 140 HOH HOH . J 5 HOH B 64 364 52 HOH HOH . J 5 HOH B 65 365 26 HOH HOH . J 5 HOH B 66 366 130 HOH HOH . J 5 HOH B 67 367 141 HOH HOH . J 5 HOH B 68 368 142 HOH HOH . J 5 HOH B 69 369 29 HOH HOH . J 5 HOH B 70 370 51 HOH HOH . J 5 HOH B 71 371 120 HOH HOH . J 5 HOH B 72 372 147 HOH HOH . J 5 HOH B 73 373 150 HOH HOH . J 5 HOH B 74 374 145 HOH HOH . J 5 HOH B 75 375 58 HOH HOH . J 5 HOH B 76 376 71 HOH HOH . J 5 HOH B 77 377 107 HOH HOH . J 5 HOH B 78 378 103 HOH HOH . J 5 HOH B 79 379 116 HOH HOH . J 5 HOH B 80 380 125 HOH HOH . J 5 HOH B 81 381 156 HOH HOH . J 5 HOH B 82 382 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 4 -38.006 15.912 -38.915 1 120.77 ? N1 EPE 203 A 1 HETATM 2 C C2 EPE . . . E 4 -38.798 16.233 -40.121 1 125.01 ? C2 EPE 203 A 1 HETATM 3 C C3 EPE . . . E 4 -39.683 17.477 -39.994 1 126.88 ? C3 EPE 203 A 1 HETATM 4 N N4 EPE . . . E 4 -39.104 18.565 -39.229 1 128.56 ? N4 EPE 203 A 1 HETATM 5 C C5 EPE . . . E 4 -38.052 18.245 -38.29 1 121.27 ? C5 EPE 203 A 1 HETATM 6 C C6 EPE . . . E 4 -38.233 16.824 -37.786 1 113.61 ? C6 EPE 203 A 1 HETATM 7 C C7 EPE . . . E 4 -39.916 19.743 -38.981 1 121.07 ? C7 EPE 203 A 1 HETATM 8 C C8 EPE . . . E 4 -39.291 20.68 -37.951 1 109.12 ? C8 EPE 203 A 1 HETATM 9 O O8 EPE . . . E 4 -40.309 21.343 -37.236 1 106.56 ? O8 EPE 203 A 1 HETATM 10 C C9 EPE . . . E 4 -38.245 14.523 -38.497 1 129.78 ? C9 EPE 203 A 1 HETATM 11 C C10 EPE . . . E 4 -37.02 13.667 -38.791 1 131.84 ? C10 EPE 203 A 1 HETATM 12 S S EPE . . . E 4 -37.101 12.075 -37.934 1 189.46 ? S EPE 203 A 1 HETATM 13 O O1S EPE . . . E 4 -38.496 11.664 -37.811 1 185.58 ? O1S EPE 203 A 1 HETATM 14 O O2S EPE . . . E 4 -36.362 11.071 -38.693 1 189.2 ? O2S EPE 203 A 1 HETATM 15 O O3S EPE . . . E 4 -36.516 12.21 -36.603 1 188.27 ? O3S EPE 203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 15 #