data_5KNU # _model_server_result.job_id aTUA44IM0OvLTlHhmU9iEg _model_server_result.datetime_utc '2025-01-05 22:28:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5knu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 5KNU # _exptl.entry_id 5KNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KNU _cell.length_a 84.975 _cell.length_b 84.975 _cell.length_c 167.723 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -111.815333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 103 A GLU 103 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A OE2 GLU 103 A GLU 103 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 A OD1 ASP 104 A ASP 104 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 D MG MG . A MG 202 1_555 H O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 D MG MG . A MG 202 1_555 H O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 D MG MG . A MG 202 1_555 H O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 D MG MG . A MG 202 1_555 H O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc8 B OE1 GLU 103 B GLU 103 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc9 B OE2 GLU 103 B GLU 103 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc10 B OD1 ASP 104 B ASP 104 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc11 G MG MG . B MG 202 1_555 I O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc12 G MG MG . B MG 202 1_555 I O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc13 G MG MG . B MG 202 1_555 I O HOH . B HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KNU _atom_sites.fract_transf_matrix[1][1] 0.011768 _atom_sites.fract_transf_matrix[1][2] 0.006794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6WA A 1 201 1 6WA DRG . D 3 MG A 1 202 1 MG MG . E 4 EPE A 1 203 1 EPE EPE . F 2 6WA B 1 201 2 6WA DRG . G 3 MG B 1 202 2 MG MG . H 5 HOH A 1 301 40 HOH HOH . H 5 HOH A 2 302 11 HOH HOH . H 5 HOH A 3 303 44 HOH HOH . H 5 HOH A 4 304 31 HOH HOH . H 5 HOH A 5 305 26 HOH HOH . H 5 HOH A 6 306 66 HOH HOH . H 5 HOH A 7 307 49 HOH HOH . H 5 HOH A 8 308 29 HOH HOH . H 5 HOH A 9 309 7 HOH HOH . H 5 HOH A 10 310 32 HOH HOH . H 5 HOH A 11 311 25 HOH HOH . H 5 HOH A 12 312 48 HOH HOH . H 5 HOH A 13 313 27 HOH HOH . H 5 HOH A 14 314 5 HOH HOH . H 5 HOH A 15 315 23 HOH HOH . H 5 HOH A 16 316 3 HOH HOH . H 5 HOH A 17 317 30 HOH HOH . H 5 HOH A 18 318 60 HOH HOH . H 5 HOH A 19 319 42 HOH HOH . H 5 HOH A 20 320 22 HOH HOH . H 5 HOH A 21 321 24 HOH HOH . H 5 HOH A 22 322 8 HOH HOH . H 5 HOH A 23 323 47 HOH HOH . H 5 HOH A 24 324 62 HOH HOH . H 5 HOH A 25 325 6 HOH HOH . H 5 HOH A 26 326 10 HOH HOH . H 5 HOH A 27 327 37 HOH HOH . H 5 HOH A 28 328 17 HOH HOH . H 5 HOH A 29 329 12 HOH HOH . H 5 HOH A 30 330 41 HOH HOH . H 5 HOH A 31 331 28 HOH HOH . H 5 HOH A 32 332 9 HOH HOH . H 5 HOH A 33 333 59 HOH HOH . I 5 HOH B 1 301 33 HOH HOH . I 5 HOH B 2 302 1 HOH HOH . I 5 HOH B 3 303 54 HOH HOH . I 5 HOH B 4 304 52 HOH HOH . I 5 HOH B 5 305 34 HOH HOH . I 5 HOH B 6 306 18 HOH HOH . I 5 HOH B 7 307 2 HOH HOH . I 5 HOH B 8 308 53 HOH HOH . I 5 HOH B 9 309 14 HOH HOH . I 5 HOH B 10 310 20 HOH HOH . I 5 HOH B 11 311 61 HOH HOH . I 5 HOH B 12 312 19 HOH HOH . I 5 HOH B 13 313 57 HOH HOH . I 5 HOH B 14 314 55 HOH HOH . I 5 HOH B 15 315 56 HOH HOH . I 5 HOH B 16 316 50 HOH HOH . I 5 HOH B 17 317 63 HOH HOH . I 5 HOH B 18 318 39 HOH HOH . I 5 HOH B 19 319 64 HOH HOH . I 5 HOH B 20 320 46 HOH HOH . I 5 HOH B 21 321 65 HOH HOH . I 5 HOH B 22 322 16 HOH HOH . I 5 HOH B 23 323 43 HOH HOH . I 5 HOH B 24 324 4 HOH HOH . I 5 HOH B 25 325 13 HOH HOH . I 5 HOH B 26 326 15 HOH HOH . I 5 HOH B 27 327 36 HOH HOH . I 5 HOH B 28 328 21 HOH HOH . I 5 HOH B 29 329 58 HOH HOH . I 5 HOH B 30 330 51 HOH HOH . I 5 HOH B 31 331 38 HOH HOH . I 5 HOH B 32 332 35 HOH HOH . I 5 HOH B 33 333 45 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -33.07 _atom_site.Cartn_y 38.484 _atom_site.Cartn_z -42.131 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 143.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #