data_5KNU # _model_server_result.job_id 22TkNlPo3e_nSksVGbtC0A _model_server_result.datetime_utc '2025-01-05 23:19:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5knu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5KNU # _exptl.entry_id 5KNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KNU _cell.length_a 84.975 _cell.length_b 84.975 _cell.length_c 167.723 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1,2 A,B,C,D,E,F,G,H,I 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -111.815333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 103 A GLU 103 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A OE2 GLU 103 A GLU 103 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 A OD1 ASP 104 A ASP 104 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 D MG MG . A MG 202 1_555 H O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 D MG MG . A MG 202 1_555 H O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 D MG MG . A MG 202 1_555 H O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 D MG MG . A MG 202 1_555 H O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc8 B OE1 GLU 103 B GLU 103 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc9 B OE2 GLU 103 B GLU 103 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc10 B OD1 ASP 104 B ASP 104 1_555 G MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc11 G MG MG . B MG 202 1_555 I O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc12 G MG MG . B MG 202 1_555 I O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc13 G MG MG . B MG 202 1_555 I O HOH . B HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 132 n n N1 C6 EPE sing 133 n n N1 C9 EPE sing 134 n n C2 C3 EPE sing 135 n n C2 H21 EPE sing 136 n n C2 H22 EPE sing 137 n n C3 N4 EPE sing 138 n n C3 H31 EPE sing 139 n n C3 H32 EPE sing 140 n n N4 C5 EPE sing 141 n n N4 C7 EPE sing 142 n n C5 C6 EPE sing 143 n n C5 H51 EPE sing 144 n n C5 H52 EPE sing 145 n n C6 H61 EPE sing 146 n n C6 H62 EPE sing 147 n n C7 C8 EPE sing 148 n n C7 H71 EPE sing 149 n n C7 H72 EPE sing 150 n n C8 O8 EPE sing 151 n n C8 H81 EPE sing 152 n n C8 H82 EPE sing 153 n n O8 HO8 EPE sing 154 n n C9 C10 EPE sing 155 n n C9 H91 EPE sing 156 n n C9 H92 EPE sing 157 n n C10 S EPE sing 158 n n C10 H101 EPE sing 159 n n C10 H102 EPE sing 160 n n S O1S EPE doub 161 n n S O2S EPE doub 162 n n S O3S EPE sing 163 n n O3S HOS3 EPE sing 164 n n # _atom_sites.entry_id 5KNU _atom_sites.fract_transf_matrix[1][1] 0.011768 _atom_sites.fract_transf_matrix[1][2] 0.006794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6WA A 1 201 1 6WA DRG . D 3 MG A 1 202 1 MG MG . E 4 EPE A 1 203 1 EPE EPE . F 2 6WA B 1 201 2 6WA DRG . G 3 MG B 1 202 2 MG MG . H 5 HOH A 1 301 40 HOH HOH . H 5 HOH A 2 302 11 HOH HOH . H 5 HOH A 3 303 44 HOH HOH . H 5 HOH A 4 304 31 HOH HOH . H 5 HOH A 5 305 26 HOH HOH . H 5 HOH A 6 306 66 HOH HOH . H 5 HOH A 7 307 49 HOH HOH . H 5 HOH A 8 308 29 HOH HOH . H 5 HOH A 9 309 7 HOH HOH . H 5 HOH A 10 310 32 HOH HOH . H 5 HOH A 11 311 25 HOH HOH . H 5 HOH A 12 312 48 HOH HOH . H 5 HOH A 13 313 27 HOH HOH . H 5 HOH A 14 314 5 HOH HOH . H 5 HOH A 15 315 23 HOH HOH . H 5 HOH A 16 316 3 HOH HOH . H 5 HOH A 17 317 30 HOH HOH . H 5 HOH A 18 318 60 HOH HOH . H 5 HOH A 19 319 42 HOH HOH . H 5 HOH A 20 320 22 HOH HOH . H 5 HOH A 21 321 24 HOH HOH . H 5 HOH A 22 322 8 HOH HOH . H 5 HOH A 23 323 47 HOH HOH . H 5 HOH A 24 324 62 HOH HOH . H 5 HOH A 25 325 6 HOH HOH . H 5 HOH A 26 326 10 HOH HOH . H 5 HOH A 27 327 37 HOH HOH . H 5 HOH A 28 328 17 HOH HOH . H 5 HOH A 29 329 12 HOH HOH . H 5 HOH A 30 330 41 HOH HOH . H 5 HOH A 31 331 28 HOH HOH . H 5 HOH A 32 332 9 HOH HOH . H 5 HOH A 33 333 59 HOH HOH . I 5 HOH B 1 301 33 HOH HOH . I 5 HOH B 2 302 1 HOH HOH . I 5 HOH B 3 303 54 HOH HOH . I 5 HOH B 4 304 52 HOH HOH . I 5 HOH B 5 305 34 HOH HOH . I 5 HOH B 6 306 18 HOH HOH . I 5 HOH B 7 307 2 HOH HOH . I 5 HOH B 8 308 53 HOH HOH . I 5 HOH B 9 309 14 HOH HOH . I 5 HOH B 10 310 20 HOH HOH . I 5 HOH B 11 311 61 HOH HOH . I 5 HOH B 12 312 19 HOH HOH . I 5 HOH B 13 313 57 HOH HOH . I 5 HOH B 14 314 55 HOH HOH . I 5 HOH B 15 315 56 HOH HOH . I 5 HOH B 16 316 50 HOH HOH . I 5 HOH B 17 317 63 HOH HOH . I 5 HOH B 18 318 39 HOH HOH . I 5 HOH B 19 319 64 HOH HOH . I 5 HOH B 20 320 46 HOH HOH . I 5 HOH B 21 321 65 HOH HOH . I 5 HOH B 22 322 16 HOH HOH . I 5 HOH B 23 323 43 HOH HOH . I 5 HOH B 24 324 4 HOH HOH . I 5 HOH B 25 325 13 HOH HOH . I 5 HOH B 26 326 15 HOH HOH . I 5 HOH B 27 327 36 HOH HOH . I 5 HOH B 28 328 21 HOH HOH . I 5 HOH B 29 329 58 HOH HOH . I 5 HOH B 30 330 51 HOH HOH . I 5 HOH B 31 331 38 HOH HOH . I 5 HOH B 32 332 35 HOH HOH . I 5 HOH B 33 333 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . E 4 -16.494 20.131 -22.075 1 64.04 ? N1 EPE 203 A 1 HETATM 2 C C2 EPE . . . E 4 -16.208 19.585 -23.411 1 59.98 ? C2 EPE 203 A 1 HETATM 3 C C3 EPE . . . E 4 -17.103 18.382 -23.693 1 72.78 ? C3 EPE 203 A 1 HETATM 4 N N4 EPE . . . E 4 -17.129 17.432 -22.594 1 80.02 ? N4 EPE 203 A 1 HETATM 5 C C5 EPE . . . E 4 -17.154 17.938 -21.236 1 67.81 ? C5 EPE 203 A 1 HETATM 6 C C6 EPE . . . E 4 -16.201 19.112 -21.056 1 69.85 ? C6 EPE 203 A 1 HETATM 7 C C7 EPE . . . E 4 -17.611 16.084 -22.829 1 80.81 ? C7 EPE 203 A 1 HETATM 8 C C8 EPE . . . E 4 -16.803 15.342 -23.888 1 86.76 ? C8 EPE 203 A 1 HETATM 9 O O8 EPE . . . E 4 -17.362 15.569 -25.163 1 78.91 ? O8 EPE 203 A 1 HETATM 10 C C9 EPE . . . E 4 -15.646 21.308 -21.828 1 53.45 ? C9 EPE 203 A 1 HETATM 11 C C10 EPE . . . E 4 -16.493 22.574 -21.855 1 51.33 ? C10 EPE 203 A 1 HETATM 12 S S EPE . . . E 4 -15.524 24.061 -21.495 1 53.57 ? S EPE 203 A 1 HETATM 13 O O1S EPE . . . E 4 -16.08 25.19 -22.237 1 44.31 ? O1S EPE 203 A 1 HETATM 14 O O2S EPE . . . E 4 -14.138 23.84 -21.894 1 58.49 ? O2S EPE 203 A 1 HETATM 15 O O3S EPE . . . E 4 -15.564 24.355 -20.066 1 35.49 ? O3S EPE 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 15 #