data_5KNV
#
_model_server_result.job_id            8UR9DbBoILqMxbeWBedGwA 
_model_server_result.datetime_utc      '2024-10-18 16:19:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5knv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5KNV 
#
_exptl.entry_id    5KNV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5KNV 
_cell.length_a            84.725 
_cell.length_b            84.725 
_cell.length_c            167.204 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5KNV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1,2 
A,B,C,D,E,F,G,H 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -111.469333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 103 A GLU 103 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? 
metalc ? metalc2 A OD1 ASP 104 A ASP 104 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc3 D MG MG . A MG 202 1_555 G O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc4 B OE2 GLU 103 B GLU 103 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc5 B OD1 ASP 104 B ASP 104 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc6 F MG MG . B MG 202 1_555 H O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc7 F MG MG . B MG 202 1_555 H O HOH . B HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc8 F MG MG . B MG 202 1_555 H O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc9 F MG MG . B MG 202 1_555 H O HOH . B HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5KNV 
_atom_sites.fract_transf_matrix[1][1]    0.011803 
_atom_sites.fract_transf_matrix[1][2]    0.006814 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005981 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6W9 A 1 201 1 6W9 DRG . 
D 3 MG A 1 202 1 MG MG . 
E 2 6W9 B 1 201 2 6W9 DRG . 
F 3 MG B 1 202 2 MG MG . 
G 4 HOH A 1 301 83 HOH HOH . 
G 4 HOH A 2 302 76 HOH HOH . 
G 4 HOH A 3 303 65 HOH HOH . 
G 4 HOH A 4 304 25 HOH HOH . 
G 4 HOH A 5 305 84 HOH HOH . 
G 4 HOH A 6 306 12 HOH HOH . 
G 4 HOH A 7 307 2 HOH HOH . 
G 4 HOH A 8 308 30 HOH HOH . 
G 4 HOH A 9 309 72 HOH HOH . 
G 4 HOH A 10 310 3 HOH HOH . 
G 4 HOH A 11 311 4 HOH HOH . 
G 4 HOH A 12 312 63 HOH HOH . 
G 4 HOH A 13 313 28 HOH HOH . 
G 4 HOH A 14 314 39 HOH HOH . 
G 4 HOH A 15 315 16 HOH HOH . 
G 4 HOH A 16 316 5 HOH HOH . 
G 4 HOH A 17 317 24 HOH HOH . 
G 4 HOH A 18 318 60 HOH HOH . 
G 4 HOH A 19 319 29 HOH HOH . 
G 4 HOH A 20 320 64 HOH HOH . 
G 4 HOH A 21 321 77 HOH HOH . 
G 4 HOH A 22 322 51 HOH HOH . 
G 4 HOH A 23 323 15 HOH HOH . 
G 4 HOH A 24 324 23 HOH HOH . 
G 4 HOH A 25 325 68 HOH HOH . 
G 4 HOH A 26 326 35 HOH HOH . 
G 4 HOH A 27 327 61 HOH HOH . 
G 4 HOH A 28 328 27 HOH HOH . 
G 4 HOH A 29 329 6 HOH HOH . 
G 4 HOH A 30 330 70 HOH HOH . 
G 4 HOH A 31 331 71 HOH HOH . 
G 4 HOH A 32 332 22 HOH HOH . 
G 4 HOH A 33 333 66 HOH HOH . 
G 4 HOH A 34 334 7 HOH HOH . 
G 4 HOH A 35 335 31 HOH HOH . 
G 4 HOH A 36 336 10 HOH HOH . 
G 4 HOH A 37 337 21 HOH HOH . 
G 4 HOH A 38 338 57 HOH HOH . 
G 4 HOH A 39 339 88 HOH HOH . 
G 4 HOH A 40 340 62 HOH HOH . 
G 4 HOH A 41 341 9 HOH HOH . 
G 4 HOH A 42 342 53 HOH HOH . 
G 4 HOH A 43 343 80 HOH HOH . 
G 4 HOH A 44 344 78 HOH HOH . 
H 4 HOH B 1 301 74 HOH HOH . 
H 4 HOH B 2 302 89 HOH HOH . 
H 4 HOH B 3 303 81 HOH HOH . 
H 4 HOH B 4 304 86 HOH HOH . 
H 4 HOH B 5 305 91 HOH HOH . 
H 4 HOH B 6 306 90 HOH HOH . 
H 4 HOH B 7 307 45 HOH HOH . 
H 4 HOH B 8 308 69 HOH HOH . 
H 4 HOH B 9 309 55 HOH HOH . 
H 4 HOH B 10 310 26 HOH HOH . 
H 4 HOH B 11 311 50 HOH HOH . 
H 4 HOH B 12 312 73 HOH HOH . 
H 4 HOH B 13 313 32 HOH HOH . 
H 4 HOH B 14 314 75 HOH HOH . 
H 4 HOH B 15 315 1 HOH HOH . 
H 4 HOH B 16 316 46 HOH HOH . 
H 4 HOH B 17 317 8 HOH HOH . 
H 4 HOH B 18 318 44 HOH HOH . 
H 4 HOH B 19 319 17 HOH HOH . 
H 4 HOH B 20 320 19 HOH HOH . 
H 4 HOH B 21 321 40 HOH HOH . 
H 4 HOH B 22 322 13 HOH HOH . 
H 4 HOH B 23 323 47 HOH HOH . 
H 4 HOH B 24 324 92 HOH HOH . 
H 4 HOH B 25 325 37 HOH HOH . 
H 4 HOH B 26 326 14 HOH HOH . 
H 4 HOH B 27 327 85 HOH HOH . 
H 4 HOH B 28 328 36 HOH HOH . 
H 4 HOH B 29 329 11 HOH HOH . 
H 4 HOH B 30 330 52 HOH HOH . 
H 4 HOH B 31 331 33 HOH HOH . 
H 4 HOH B 32 332 49 HOH HOH . 
H 4 HOH B 33 333 43 HOH HOH . 
H 4 HOH B 34 334 20 HOH HOH . 
H 4 HOH B 35 335 87 HOH HOH . 
H 4 HOH B 36 336 42 HOH HOH . 
H 4 HOH B 37 337 34 HOH HOH . 
H 4 HOH B 38 338 18 HOH HOH . 
H 4 HOH B 39 339 48 HOH HOH . 
H 4 HOH B 40 340 54 HOH HOH . 
H 4 HOH B 41 341 38 HOH HOH . 
H 4 HOH B 42 342 58 HOH HOH . 
H 4 HOH B 43 343 79 HOH HOH . 
H 4 HOH B 44 344 82 HOH HOH . 
H 4 HOH B 45 345 59 HOH HOH . 
H 4 HOH B 46 346 56 HOH HOH . 
H 4 HOH B 47 347 41 HOH HOH . 
H 4 HOH B 48 348 67 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -32.813 
_atom_site.Cartn_y               39.464 
_atom_site.Cartn_z               -41.953 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        145.21 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#