data_5KO3 # _model_server_result.job_id GK8gwcCMzUErr-GBKyPvYQ _model_server_result.datetime_utc '2024-10-11 00:29:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ko3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 5KO3 # _exptl.entry_id 5KO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.25 _cell.angle_gamma 90 _cell.entry_id 5KO3 _cell.length_a 83.705 _cell.length_b 30.549 _cell.length_c 86.717 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 48 A ASN 110 1_555 A N CME 49 A CME 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C CME 49 A CME 111 1_555 A N TYR 50 A TYR 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A SG CYS 129 A CYS 191 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc2 A SG CYS 132 A CYS 194 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc3 A SG CYS 164 A CYS 226 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 A SG CYS 166 A CYS 228 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5KO3 _atom_sites.fract_transf_matrix[1][1] 0.011947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005891 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 ACT A 1 402 1 ACT ACT . D 3 ACT A 1 403 2 ACT ACT . E 3 ACT A 1 404 6 ACT ACT . F 3 ACT A 1 405 8 ACT ACT . G 3 ACT A 1 406 9 ACT ACT . H 3 ACT A 1 407 10 ACT ACT . I 3 ACT A 1 408 12 ACT ACT . J 4 HOH A 1 501 94 HOH HOH . J 4 HOH A 2 502 99 HOH HOH . J 4 HOH A 3 503 11 HOH HOH . J 4 HOH A 4 504 17 HOH HOH . J 4 HOH A 5 505 15 HOH HOH . J 4 HOH A 6 506 91 HOH HOH . J 4 HOH A 7 507 97 HOH HOH . J 4 HOH A 8 508 23 HOH HOH . J 4 HOH A 9 509 102 HOH HOH . J 4 HOH A 10 510 45 HOH HOH . J 4 HOH A 11 511 16 HOH HOH . J 4 HOH A 12 512 10 HOH HOH . J 4 HOH A 13 513 71 HOH HOH . J 4 HOH A 14 514 2 HOH HOH . J 4 HOH A 15 515 4 HOH HOH . J 4 HOH A 16 516 1 HOH HOH . J 4 HOH A 17 517 89 HOH HOH . J 4 HOH A 18 518 30 HOH HOH . J 4 HOH A 19 519 37 HOH HOH . J 4 HOH A 20 520 21 HOH HOH . J 4 HOH A 21 521 41 HOH HOH . J 4 HOH A 22 522 60 HOH HOH . J 4 HOH A 23 523 33 HOH HOH . J 4 HOH A 24 524 28 HOH HOH . J 4 HOH A 25 525 46 HOH HOH . J 4 HOH A 26 526 57 HOH HOH . J 4 HOH A 27 527 70 HOH HOH . J 4 HOH A 28 528 106 HOH HOH . J 4 HOH A 29 529 49 HOH HOH . J 4 HOH A 30 530 12 HOH HOH . J 4 HOH A 31 531 78 HOH HOH . J 4 HOH A 32 532 77 HOH HOH . J 4 HOH A 33 533 6 HOH HOH . J 4 HOH A 34 534 90 HOH HOH . J 4 HOH A 35 535 7 HOH HOH . J 4 HOH A 36 536 8 HOH HOH . J 4 HOH A 37 537 93 HOH HOH . J 4 HOH A 38 538 69 HOH HOH . J 4 HOH A 39 539 76 HOH HOH . J 4 HOH A 40 540 3 HOH HOH . J 4 HOH A 41 541 9 HOH HOH . J 4 HOH A 42 542 64 HOH HOH . J 4 HOH A 43 543 65 HOH HOH . J 4 HOH A 44 544 31 HOH HOH . J 4 HOH A 45 545 56 HOH HOH . J 4 HOH A 46 546 44 HOH HOH . J 4 HOH A 47 547 84 HOH HOH . J 4 HOH A 48 548 5 HOH HOH . J 4 HOH A 49 549 75 HOH HOH . J 4 HOH A 50 550 35 HOH HOH . J 4 HOH A 51 551 53 HOH HOH . J 4 HOH A 52 552 18 HOH HOH . J 4 HOH A 53 553 82 HOH HOH . J 4 HOH A 54 554 19 HOH HOH . J 4 HOH A 55 555 51 HOH HOH . J 4 HOH A 56 556 38 HOH HOH . J 4 HOH A 57 557 96 HOH HOH . J 4 HOH A 58 558 83 HOH HOH . J 4 HOH A 59 559 14 HOH HOH . J 4 HOH A 60 560 34 HOH HOH . J 4 HOH A 61 561 20 HOH HOH . J 4 HOH A 62 562 43 HOH HOH . J 4 HOH A 63 563 26 HOH HOH . J 4 HOH A 64 564 25 HOH HOH . J 4 HOH A 65 565 13 HOH HOH . J 4 HOH A 66 566 24 HOH HOH . J 4 HOH A 67 567 59 HOH HOH . J 4 HOH A 68 568 88 HOH HOH . J 4 HOH A 69 569 61 HOH HOH . J 4 HOH A 70 570 50 HOH HOH . J 4 HOH A 71 571 39 HOH HOH . J 4 HOH A 72 572 36 HOH HOH . J 4 HOH A 73 573 74 HOH HOH . J 4 HOH A 74 574 22 HOH HOH . J 4 HOH A 75 575 103 HOH HOH . J 4 HOH A 76 576 27 HOH HOH . J 4 HOH A 77 577 32 HOH HOH . J 4 HOH A 78 578 68 HOH HOH . J 4 HOH A 79 579 80 HOH HOH . J 4 HOH A 80 580 52 HOH HOH . J 4 HOH A 81 581 62 HOH HOH . J 4 HOH A 82 582 48 HOH HOH . J 4 HOH A 83 583 54 HOH HOH . J 4 HOH A 84 584 72 HOH HOH . J 4 HOH A 85 585 67 HOH HOH . J 4 HOH A 86 586 79 HOH HOH . J 4 HOH A 87 587 73 HOH HOH . J 4 HOH A 88 588 95 HOH HOH . J 4 HOH A 89 589 42 HOH HOH . J 4 HOH A 90 590 105 HOH HOH . J 4 HOH A 91 591 47 HOH HOH . J 4 HOH A 92 592 63 HOH HOH . J 4 HOH A 93 593 87 HOH HOH . J 4 HOH A 94 594 55 HOH HOH . J 4 HOH A 95 595 86 HOH HOH . J 4 HOH A 96 596 58 HOH HOH . J 4 HOH A 97 597 100 HOH HOH . J 4 HOH A 98 598 85 HOH HOH . J 4 HOH A 99 599 40 HOH HOH . J 4 HOH A 100 600 104 HOH HOH . J 4 HOH A 101 601 101 HOH HOH . J 4 HOH A 102 602 29 HOH HOH . J 4 HOH A 103 603 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . H 3 24.361 16.525 12.414 1 61.5 ? C ACT 407 A 1 HETATM 2 O O ACT . . . H 3 24.972 17.22 11.567 1 58.25 ? O ACT 407 A 1 HETATM 3 O OXT ACT . . . H 3 23.623 17.145 13.229 1 46.01 ? OXT ACT 407 A 1 HETATM 4 C CH3 ACT . . . H 3 24.515 15.028 12.447 1 46.38 ? CH3 ACT 407 A 1 HETATM 5 H H1 ACT . . . H 3 23.908 14.618 13.255 1 55.65 ? H1 ACT 407 A 1 HETATM 6 H H2 ACT . . . H 3 25.562 14.774 12.614 1 55.65 ? H2 ACT 407 A 1 HETATM 7 H H3 ACT . . . H 3 24.186 14.607 11.497 1 55.65 ? H3 ACT 407 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #