data_5KO8 # _model_server_result.job_id saZ5z7aXLfmr8KaI2DelvQ _model_server_result.datetime_utc '2024-11-01 16:37:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ko8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 5KO8 # _exptl.entry_id 5KO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-IODO-TYROSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KO8 _cell.length_a 152.718 _cell.length_b 152.718 _cell.length_c 87.286 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,3 B,E,F,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 29.095333 3 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -152.718 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C9 H10 I N O3' _chem_comp.formula_weight 307.085 _chem_comp.id IYR _chem_comp.mon_nstd_flag n _chem_comp.name 3-IODO-TYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA IYR sing 227 n n N H IYR sing 228 n n N H2 IYR sing 229 n n CA CB IYR sing 230 n n CA C IYR sing 231 n n CA HA IYR sing 232 n n CB CC IYR sing 233 n n CB HB2 IYR sing 234 n n CB HB3 IYR sing 235 n n CC CD IYR doub 236 n y CC CH IYR sing 237 n y CD CE IYR sing 238 n y CD HD IYR sing 239 n n CE IE IYR sing 240 n n CE CF IYR doub 241 n y CF OF IYR sing 242 n n CF CG IYR sing 243 n y OF HF IYR sing 244 n n CG CH IYR doub 245 n y CG HG IYR sing 246 n n CH HH IYR sing 247 n n C O IYR doub 248 n n C OXT IYR sing 249 n n OXT HXT IYR sing 250 n n # _atom_sites.entry_id 5KO8 _atom_sites.fract_transf_matrix[1][1] 0.006548 _atom_sites.fract_transf_matrix[1][2] 0.00378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 301 FMN FMN . D 3 IYR A 1 302 302 IYR IYR . E 2 FMN B 1 301 301 FMN FMN . F 3 IYR B 1 302 302 IYR IYR . G 4 HOH A 1 401 2 HOH HOH . G 4 HOH A 2 402 455 HOH HOH . G 4 HOH A 3 403 405 HOH HOH . G 4 HOH A 4 404 404 HOH HOH . G 4 HOH A 5 405 402 HOH HOH . G 4 HOH A 6 406 410 HOH HOH . G 4 HOH A 7 407 423 HOH HOH . G 4 HOH A 8 408 403 HOH HOH . G 4 HOH A 9 409 408 HOH HOH . G 4 HOH A 10 410 415 HOH HOH . G 4 HOH A 11 411 412 HOH HOH . G 4 HOH A 12 412 411 HOH HOH . G 4 HOH A 13 413 409 HOH HOH . G 4 HOH A 14 414 414 HOH HOH . G 4 HOH A 15 415 406 HOH HOH . G 4 HOH A 16 416 418 HOH HOH . G 4 HOH A 17 417 424 HOH HOH . G 4 HOH A 18 418 407 HOH HOH . G 4 HOH A 19 419 416 HOH HOH . G 4 HOH A 20 420 441 HOH HOH . G 4 HOH A 21 421 420 HOH HOH . G 4 HOH A 22 422 413 HOH HOH . G 4 HOH A 23 423 428 HOH HOH . G 4 HOH A 24 424 436 HOH HOH . G 4 HOH A 25 425 426 HOH HOH . G 4 HOH A 26 426 422 HOH HOH . G 4 HOH A 27 427 427 HOH HOH . G 4 HOH A 28 428 439 HOH HOH . G 4 HOH A 29 429 432 HOH HOH . G 4 HOH A 30 430 431 HOH HOH . G 4 HOH A 31 431 434 HOH HOH . G 4 HOH A 32 432 419 HOH HOH . G 4 HOH A 33 433 440 HOH HOH . G 4 HOH A 34 434 430 HOH HOH . G 4 HOH A 35 435 443 HOH HOH . G 4 HOH A 36 436 417 HOH HOH . G 4 HOH A 37 437 438 HOH HOH . G 4 HOH A 38 438 433 HOH HOH . G 4 HOH A 39 439 445 HOH HOH . G 4 HOH A 40 440 446 HOH HOH . G 4 HOH A 41 441 437 HOH HOH . G 4 HOH A 42 442 429 HOH HOH . G 4 HOH A 43 443 421 HOH HOH . G 4 HOH A 44 444 435 HOH HOH . G 4 HOH A 45 445 425 HOH HOH . G 4 HOH A 46 446 451 HOH HOH . G 4 HOH A 47 447 442 HOH HOH . G 4 HOH A 48 448 447 HOH HOH . G 4 HOH A 49 449 452 HOH HOH . G 4 HOH A 50 450 444 HOH HOH . G 4 HOH A 51 451 449 HOH HOH . G 4 HOH A 52 452 453 HOH HOH . G 4 HOH A 53 453 450 HOH HOH . G 4 HOH A 54 454 468 HOH HOH . G 4 HOH A 55 455 457 HOH HOH . G 4 HOH A 56 456 456 HOH HOH . G 4 HOH A 57 457 459 HOH HOH . G 4 HOH A 58 458 458 HOH HOH . G 4 HOH A 59 459 437 HOH HOH . G 4 HOH A 60 460 460 HOH HOH . G 4 HOH A 61 461 461 HOH HOH . G 4 HOH A 62 462 454 HOH HOH . G 4 HOH A 63 463 471 HOH HOH . G 4 HOH A 64 464 469 HOH HOH . G 4 HOH A 65 465 463 HOH HOH . G 4 HOH A 66 466 466 HOH HOH . G 4 HOH A 67 467 467 HOH HOH . G 4 HOH A 68 468 465 HOH HOH . G 4 HOH A 69 469 448 HOH HOH . G 4 HOH A 70 470 472 HOH HOH . G 4 HOH A 71 471 464 HOH HOH . G 4 HOH A 72 472 470 HOH HOH . G 4 HOH A 73 473 462 HOH HOH . G 4 HOH A 74 474 474 HOH HOH . G 4 HOH A 75 475 475 HOH HOH . G 4 HOH A 76 476 476 HOH HOH . G 4 HOH A 77 477 477 HOH HOH . G 4 HOH A 78 478 480 HOH HOH . G 4 HOH A 79 479 473 HOH HOH . G 4 HOH A 80 480 478 HOH HOH . G 4 HOH A 81 481 479 HOH HOH . G 4 HOH A 82 482 481 HOH HOH . G 4 HOH A 83 483 482 HOH HOH . G 4 HOH A 84 484 483 HOH HOH . H 4 HOH B 1 401 401 HOH HOH . H 4 HOH B 2 402 402 HOH HOH . H 4 HOH B 3 403 411 HOH HOH . H 4 HOH B 4 404 403 HOH HOH . H 4 HOH B 5 405 404 HOH HOH . H 4 HOH B 6 406 406 HOH HOH . H 4 HOH B 7 407 405 HOH HOH . H 4 HOH B 8 408 409 HOH HOH . H 4 HOH B 9 409 410 HOH HOH . H 4 HOH B 10 410 412 HOH HOH . H 4 HOH B 11 411 430 HOH HOH . H 4 HOH B 12 412 408 HOH HOH . H 4 HOH B 13 413 407 HOH HOH . H 4 HOH B 14 414 417 HOH HOH . H 4 HOH B 15 415 419 HOH HOH . H 4 HOH B 16 416 413 HOH HOH . H 4 HOH B 17 417 423 HOH HOH . H 4 HOH B 18 418 416 HOH HOH . H 4 HOH B 19 419 426 HOH HOH . H 4 HOH B 20 420 427 HOH HOH . H 4 HOH B 21 421 418 HOH HOH . H 4 HOH B 22 422 429 HOH HOH . H 4 HOH B 23 423 421 HOH HOH . H 4 HOH B 24 424 425 HOH HOH . H 4 HOH B 25 425 432 HOH HOH . H 4 HOH B 26 426 424 HOH HOH . H 4 HOH B 27 427 414 HOH HOH . H 4 HOH B 28 428 415 HOH HOH . H 4 HOH B 29 429 420 HOH HOH . H 4 HOH B 30 430 431 HOH HOH . H 4 HOH B 31 431 422 HOH HOH . H 4 HOH B 32 432 438 HOH HOH . H 4 HOH B 33 433 433 HOH HOH . H 4 HOH B 34 434 428 HOH HOH . H 4 HOH B 35 435 435 HOH HOH . H 4 HOH B 36 436 1 HOH HOH . H 4 HOH B 37 437 434 HOH HOH . H 4 HOH B 38 438 436 HOH HOH . H 4 HOH B 39 439 444 HOH HOH . H 4 HOH B 40 440 441 HOH HOH . H 4 HOH B 41 441 442 HOH HOH . H 4 HOH B 42 442 443 HOH HOH . H 4 HOH B 43 443 440 HOH HOH . H 4 HOH B 44 444 445 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N IYR . . . F 3 -30.39 -24.605 4.316 1 54.39 ? N IYR 302 B 1 HETATM 2 C CA IYR . . . F 3 -30.778 -24.38 2.939 1 60.17 ? CA IYR 302 B 1 HETATM 3 C CB IYR . . . F 3 -29.692 -24.684 1.879 1 61.19 ? CB IYR 302 B 1 HETATM 4 C CC IYR . A . F 3 -29.17 -26.074 1.985 0.67 59.54 ? CC IYR 302 B 1 HETATM 5 C CC IYR . B . F 3 -29.161 -26.06 2.033 0.33 59.59 ? CC IYR 302 B 1 HETATM 6 C CD IYR . A . F 3 -27.965 -26.333 2.643 0.67 57.2 ? CD IYR 302 B 1 HETATM 7 C CD IYR . B . F 3 -29.707 -27.107 1.293 0.33 58.04 ? CD IYR 302 B 1 HETATM 8 C CE IYR . A . F 3 -27.449 -27.631 2.754 0.67 60.2 ? CE IYR 302 B 1 HETATM 9 C CE IYR . B . F 3 -29.222 -28.41 1.423 0.33 57.49 ? CE IYR 302 B 1 HETATM 10 I IE IYR . A . F 3 -25.689 -27.877 3.733 0.67 62.19 ? IE IYR 302 B 1 HETATM 11 I IE IYR . B . F 3 -30.082 -29.856 0.308 0.33 90.19 ? IE IYR 302 B 1 HETATM 12 C CF IYR . A . F 3 -28.173 -28.69 2.185 0.67 51.32 ? CF IYR 302 B 1 HETATM 13 C CF IYR . B . F 3 -28.169 -28.66 2.313 0.33 51.61 ? CF IYR 302 B 1 HETATM 14 O OF IYR . A . F 3 -27.808 -30.013 2.211 0.67 46.8 ? OF IYR 302 B 1 HETATM 15 O OF IYR . B . F 3 -27.61 -29.893 2.527 0.33 49.36 ? OF IYR 302 B 1 HETATM 16 C CG IYR . A . F 3 -29.388 -28.438 1.516 0.67 57.48 ? CG IYR 302 B 1 HETATM 17 C CG IYR . B . F 3 -27.609 -27.607 3.065 0.33 59.67 ? CG IYR 302 B 1 HETATM 18 C CH IYR . A . F 3 -29.876 -27.144 1.42 0.67 57.57 ? CH IYR 302 B 1 HETATM 19 C CH IYR . B . F 3 -28.107 -26.321 2.92 0.33 57.64 ? CH IYR 302 B 1 HETATM 20 C C IYR . . . F 3 -32.034 -25.18 2.615 1 60.93 ? C IYR 302 B 1 HETATM 21 O O IYR . . . F 3 -32.664 -25.94 3.35 1 52.78 ? O IYR 302 B 1 HETATM 22 O OXT IYR . . . F 3 -32.516 -25.013 1.354 1 59.08 ? OXT IYR 302 B 1 HETATM 23 H H2 IYR . . . F 3 -30.929 -24.036 4.941 1 65.27 ? H2 IYR 302 B 1 HETATM 24 H H IYR . . . F 3 -29.416 -24.403 4.432 1 65.27 ? H IYR 302 B 1 HETATM 25 H HA IYR . . . F 3 -31.039 -23.281 2.854 1 72.2 ? HA IYR 302 B 1 HETATM 26 H HB2 IYR . A . F 3 -28.85 -23.948 1.989 0.67 73.43 ? HB2 IYR 302 B 1 HETATM 27 H HB2 IYR . B . F 3 -28.86 -23.935 1.969 0.33 73.43 ? HB2 IYR 302 B 1 HETATM 28 H HB3 IYR . A . F 3 -30.146 -24.524 0.864 0.67 73.43 ? HB3 IYR 302 B 1 HETATM 29 H HB3 IYR . B . F 3 -30.152 -24.56 0.862 0.33 73.43 ? HB3 IYR 302 B 1 HETATM 30 H HD IYR . A . F 3 -27.409 -25.488 3.083 0.67 68.64 ? HD IYR 302 B 1 HETATM 31 H HD IYR . B . F 3 -30.536 -26.897 0.596 0.33 69.65 ? HD IYR 302 B 1 HETATM 32 H HF IYR . A . F 3 -27.129 -30.136 2.895 0.67 56.16 ? HF IYR 302 B 1 HETATM 33 H HF IYR . B . F 3 -26.916 -29.808 3.201 0.33 59.23 ? HF IYR 302 B 1 HETATM 34 H HG IYR . A . F 3 -29.937 -29.287 1.082 0.67 68.98 ? HG IYR 302 B 1 HETATM 35 H HG IYR . B . F 3 -26.783 -27.829 3.757 0.33 71.6 ? HG IYR 302 B 1 HETATM 36 H HH IYR . A . F 3 -30.827 -26.958 0.899 0.67 69.08 ? HH IYR 302 B 1 HETATM 37 H HH IYR . B . F 3 -27.67 -25.499 3.508 0.33 69.17 ? HH IYR 302 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #