data_5KOM # _model_server_result.job_id C349MDiGVFT-0r0VCucg_Q _model_server_result.datetime_utc '2025-01-10 07:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 5KOM # _exptl.entry_id 5KOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KOM _cell.length_a 87.5 _cell.length_b 87.5 _cell.length_c 144.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 75 A GLY 75 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A O SER 78 A SER 78 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 E NA NA . A NA 201 1_555 B O GLY 75 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 E NA NA . A NA 201 1_555 B O SER 78 B SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 83 n n C40 C43 DMU sing 84 n n C37 C34 DMU sing 85 n n C34 C31 DMU sing 86 n n C31 C28 DMU sing 87 n n C28 C25 DMU sing 88 n n C22 C25 DMU sing 89 n n C22 C19 DMU sing 90 n n O61 C57 DMU sing 91 n n O4 C7 DMU sing 92 n n C18 C19 DMU sing 93 n n C18 O16 DMU sing 94 n n O5 C6 DMU sing 95 n n O5 C4 DMU sing 96 n n C57 C4 DMU sing 97 n n C6 O16 DMU sing 98 n n C6 C1 DMU sing 99 n n C7 C5 DMU sing 100 n n C7 C8 DMU sing 101 n n C4 C3 DMU sing 102 n n O1 C10 DMU sing 103 n n O1 C9 DMU sing 104 n n C10 C5 DMU sing 105 n n C10 O7 DMU sing 106 n n C5 O3 DMU sing 107 n n O49 C1 DMU sing 108 n n C8 C9 DMU sing 109 n n C8 O2 DMU sing 110 n n C1 C2 DMU sing 111 n n C11 C9 DMU sing 112 n n C11 O6 DMU sing 113 n n C3 O7 DMU sing 114 n n C3 C2 DMU sing 115 n n C2 O55 DMU sing 116 n n C1 H1 DMU sing 117 n n C2 H2 DMU sing 118 n n C3 H3 DMU sing 119 n n C4 H4 DMU sing 120 n n C6 H5 DMU sing 121 n n C18 H6 DMU sing 122 n n C18 H7 DMU sing 123 n n C19 H8 DMU sing 124 n n C19 H9 DMU sing 125 n n C22 H10 DMU sing 126 n n C22 H11 DMU sing 127 n n C25 H12 DMU sing 128 n n C25 H13 DMU sing 129 n n C28 H14 DMU sing 130 n n C28 H15 DMU sing 131 n n C31 H16 DMU sing 132 n n C31 H17 DMU sing 133 n n C34 H18 DMU sing 134 n n C34 H19 DMU sing 135 n n C37 H20 DMU sing 136 n n C37 H21 DMU sing 137 n n C40 H22 DMU sing 138 n n C40 H23 DMU sing 139 n n C43 H24 DMU sing 140 n n C43 H25 DMU sing 141 n n C43 H26 DMU sing 142 n n O49 H27 DMU sing 143 n n O55 H28 DMU sing 144 n n C57 H29 DMU sing 145 n n C57 H30 DMU sing 146 n n O61 H31 DMU sing 147 n n C5 H32 DMU sing 148 n n C7 H33 DMU sing 149 n n C8 H34 DMU sing 150 n n C9 H35 DMU sing 151 n n C10 H36 DMU sing 152 n n O2 H37 DMU sing 153 n n O3 H38 DMU sing 154 n n O4 H39 DMU sing 155 n n C11 H40 DMU sing 156 n n C11 H41 DMU sing 157 n n O6 H42 DMU sing 158 n n # _atom_sites.entry_id 5KOM _atom_sites.fract_transf_matrix[1][1] 0.011429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 201 1 NA NA . F 4 DMU A 1 202 1 DMU DMU . G 5 F A 1 203 1 F F . H 4 DMU B 1 201 2 DMU DMU . I 5 F B 1 202 2 F F . J 4 DMU C 1 101 3 DMU DMU . K 6 HOH A 1 301 1 HOH HOH . K 6 HOH A 2 302 5 HOH HOH . K 6 HOH A 3 303 8 HOH HOH . L 6 HOH B 1 301 2 HOH HOH . L 6 HOH B 2 302 9 HOH HOH . L 6 HOH B 3 303 4 HOH HOH . M 6 HOH D 1 101 7 HOH HOH . M 6 HOH D 2 102 3 HOH HOH . M 6 HOH D 3 103 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . J 4 76.923 20.477 -12.816 1 122.6 ? C1 DMU 101 C 1 HETATM 2 C C2 DMU . . . J 4 78.347 20.091 -12.434 1 120.93 ? C2 DMU 101 C 1 HETATM 3 C C3 DMU . . . J 4 79.154 19.709 -13.665 1 122.89 ? C3 DMU 101 C 1 HETATM 4 C C4 DMU . . . J 4 79.246 20.879 -14.641 1 126.98 ? C4 DMU 101 C 1 HETATM 5 O O5 DMU . . . J 4 78.134 21.788 -14.486 1 131.09 ? O5 DMU 101 C 1 HETATM 6 C C6 DMU . . . J 4 76.874 21.217 -14.152 1 130.53 ? C6 DMU 101 C 1 HETATM 7 O O7 DMU . . . J 4 80.474 19.377 -13.196 1 119.16 ? O7 DMU 101 C 1 HETATM 8 O O16 DMU . . . J 4 76.415 20.318 -15.134 1 143.12 ? O16 DMU 101 C 1 HETATM 9 C C18 DMU . . . J 4 75.542 20.894 -16.112 1 140.14 ? C18 DMU 101 C 1 HETATM 10 C C19 DMU . . . J 4 75.269 19.89 -17.211 1 137.24 ? C19 DMU 101 C 1 HETATM 11 C C22 DMU . . . J 4 74.352 18.733 -16.815 1 133.91 ? C22 DMU 101 C 1 HETATM 12 C C25 DMU . . . J 4 72.936 19.099 -16.38 1 131.7 ? C25 DMU 101 C 1 HETATM 13 C C28 DMU . . . J 4 72.233 20.15 -17.233 1 134.61 ? C28 DMU 101 C 1 HETATM 14 C C31 DMU . . . J 4 70.71 20.162 -17.106 1 133.45 ? C31 DMU 101 C 1 HETATM 15 C C34 DMU . . . J 4 70.056 21.538 -16.995 1 129.85 ? C34 DMU 101 C 1 HETATM 16 C C37 DMU . . . J 4 69.379 21.804 -15.655 1 126.45 ? C37 DMU 101 C 1 HETATM 17 C C40 DMU . . . J 4 68.001 21.164 -15.511 1 122.57 ? C40 DMU 101 C 1 HETATM 18 C C43 DMU . . . J 4 67.444 21.231 -14.103 1 117.45 ? C43 DMU 101 C 1 HETATM 19 O O49 DMU . . . J 4 76.37 21.289 -11.787 1 112.62 ? O49 DMU 101 C 1 HETATM 20 O O55 DMU . . . J 4 78.31 19.009 -11.509 1 119.32 ? O55 DMU 101 C 1 HETATM 21 C C57 DMU . . . J 4 79.31 20.474 -16.103 1 127.17 ? C57 DMU 101 C 1 HETATM 22 O O61 DMU . . . J 4 79.255 21.599 -16.971 1 126.52 ? O61 DMU 101 C 1 HETATM 23 C C5 DMU . . . J 4 82.003 17.649 -12.569 1 107.45 ? C5 DMU 101 C 1 HETATM 24 C C7 DMU . . . J 4 83.156 18.613 -12.305 1 107.29 ? C7 DMU 101 C 1 HETATM 25 C C8 DMU . . . J 4 83.892 18.966 -13.596 1 106.76 ? C8 DMU 101 C 1 HETATM 26 C C9 DMU . . . J 4 82.929 19.374 -14.713 1 105.02 ? C9 DMU 101 C 1 HETATM 27 O O1 DMU . . . J 4 81.851 18.426 -14.844 1 108.9 ? O1 DMU 101 C 1 HETATM 28 C C10 DMU . . . J 4 81.096 18.197 -13.665 1 110.92 ? C10 DMU 101 C 1 HETATM 29 O O2 DMU . . . J 4 84.784 20.048 -13.343 1 103.76 ? O2 DMU 101 C 1 HETATM 30 O O3 DMU . . . J 4 81.25 17.426 -11.384 1 100.66 ? O3 DMU 101 C 1 HETATM 31 O O4 DMU . . . J 4 84.074 18.038 -11.379 1 100.45 ? O4 DMU 101 C 1 HETATM 32 C C11 DMU . . . J 4 83.609 19.434 -16.067 1 101.61 ? C11 DMU 101 C 1 HETATM 33 O O6 DMU . . . J 4 82.696 19.635 -17.138 1 98.03 ? O6 DMU 101 C 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #