data_5KOM
#
_model_server_result.job_id            INpC3PL-cMs-rkFdLvnL0Q 
_model_server_result.datetime_utc      '2025-01-25 07:15:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kom 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    5KOM 
#
_exptl.entry_id    5KOM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              482.562 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            DECYL-BETA-D-MALTOPYRANOSIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KOM 
_cell.length_a            87.5 
_cell.length_b            87.5 
_cell.length_c            144.54 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KOM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 75 A GLY 75 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc2 A O SER 78 A SER 78 1_555 E NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc3 E NA NA . A NA 201 1_555 B O GLY 75 B GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc4 E NA NA . A NA 201 1_555 B O SER 78 B SER 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
#
_chem_comp.formula           'C22 H42 O11' 
_chem_comp.formula_weight    482.562 
_chem_comp.id                DMU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DECYL-BETA-D-MALTOPYRANOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     DECYLMALTOSIDE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C40 C37 DMU sing 83 n n 
C40 C43 DMU sing 84 n n 
C37 C34 DMU sing 85 n n 
C34 C31 DMU sing 86 n n 
C31 C28 DMU sing 87 n n 
C28 C25 DMU sing 88 n n 
C22 C25 DMU sing 89 n n 
C22 C19 DMU sing 90 n n 
O61 C57 DMU sing 91 n n 
O4 C7 DMU sing 92 n n 
C18 C19 DMU sing 93 n n 
C18 O16 DMU sing 94 n n 
O5 C6 DMU sing 95 n n 
O5 C4 DMU sing 96 n n 
C57 C4 DMU sing 97 n n 
C6 O16 DMU sing 98 n n 
C6 C1 DMU sing 99 n n 
C7 C5 DMU sing 100 n n 
C7 C8 DMU sing 101 n n 
C4 C3 DMU sing 102 n n 
O1 C10 DMU sing 103 n n 
O1 C9 DMU sing 104 n n 
C10 C5 DMU sing 105 n n 
C10 O7 DMU sing 106 n n 
C5 O3 DMU sing 107 n n 
O49 C1 DMU sing 108 n n 
C8 C9 DMU sing 109 n n 
C8 O2 DMU sing 110 n n 
C1 C2 DMU sing 111 n n 
C11 C9 DMU sing 112 n n 
C11 O6 DMU sing 113 n n 
C3 O7 DMU sing 114 n n 
C3 C2 DMU sing 115 n n 
C2 O55 DMU sing 116 n n 
C1 H1 DMU sing 117 n n 
C2 H2 DMU sing 118 n n 
C3 H3 DMU sing 119 n n 
C4 H4 DMU sing 120 n n 
C6 H5 DMU sing 121 n n 
C18 H6 DMU sing 122 n n 
C18 H7 DMU sing 123 n n 
C19 H8 DMU sing 124 n n 
C19 H9 DMU sing 125 n n 
C22 H10 DMU sing 126 n n 
C22 H11 DMU sing 127 n n 
C25 H12 DMU sing 128 n n 
C25 H13 DMU sing 129 n n 
C28 H14 DMU sing 130 n n 
C28 H15 DMU sing 131 n n 
C31 H16 DMU sing 132 n n 
C31 H17 DMU sing 133 n n 
C34 H18 DMU sing 134 n n 
C34 H19 DMU sing 135 n n 
C37 H20 DMU sing 136 n n 
C37 H21 DMU sing 137 n n 
C40 H22 DMU sing 138 n n 
C40 H23 DMU sing 139 n n 
C43 H24 DMU sing 140 n n 
C43 H25 DMU sing 141 n n 
C43 H26 DMU sing 142 n n 
O49 H27 DMU sing 143 n n 
O55 H28 DMU sing 144 n n 
C57 H29 DMU sing 145 n n 
C57 H30 DMU sing 146 n n 
O61 H31 DMU sing 147 n n 
C5 H32 DMU sing 148 n n 
C7 H33 DMU sing 149 n n 
C8 H34 DMU sing 150 n n 
C9 H35 DMU sing 151 n n 
C10 H36 DMU sing 152 n n 
O2 H37 DMU sing 153 n n 
O3 H38 DMU sing 154 n n 
O4 H39 DMU sing 155 n n 
C11 H40 DMU sing 156 n n 
C11 H41 DMU sing 157 n n 
O6 H42 DMU sing 158 n n 
#
_atom_sites.entry_id                     5KOM 
_atom_sites.fract_transf_matrix[1][1]    0.011429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011429 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NA A 1 201 1 NA NA . 
F 4 DMU A 1 202 1 DMU DMU . 
G 5 F A 1 203 1 F F . 
H 4 DMU B 1 201 2 DMU DMU . 
I 5 F B 1 202 2 F F . 
J 4 DMU C 1 101 3 DMU DMU . 
K 6 HOH A 1 301 1 HOH HOH . 
K 6 HOH A 2 302 5 HOH HOH . 
K 6 HOH A 3 303 8 HOH HOH . 
L 6 HOH B 1 301 2 HOH HOH . 
L 6 HOH B 2 302 9 HOH HOH . 
L 6 HOH B 3 303 4 HOH HOH . 
M 6 HOH D 1 101 7 HOH HOH . 
M 6 HOH D 2 102 3 HOH HOH . 
M 6 HOH D 3 103 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DMU . . . H 4 81.184 24.165 -10.787 1 70.84 ? C1 DMU 201 B 1 
HETATM 2 C C2 DMU . . . H 4 81.113 22.781 -10.151 1 70.09 ? C2 DMU 201 B 1 
HETATM 3 C C3 DMU . . . H 4 82.088 22.705 -8.983 1 70.86 ? C3 DMU 201 B 1 
HETATM 4 C C4 DMU . . . H 4 81.878 23.855 -8.004 1 70.48 ? C4 DMU 201 B 1 
HETATM 5 O O5 DMU . . . H 4 81.903 25.112 -8.7 1 68.56 ? O5 DMU 201 B 1 
HETATM 6 C C6 DMU . . . H 4 80.919 25.213 -9.713 1 70.07 ? C6 DMU 201 B 1 
HETATM 7 O O7 DMU . . . H 4 81.849 21.491 -8.257 1 72.46 ? O7 DMU 201 B 1 
HETATM 8 O O16 DMU . . . H 4 80.96 26.477 -10.313 1 74.46 ? O16 DMU 201 B 1 
HETATM 9 C C18 DMU . . . H 4 80.307 27.498 -9.551 1 77.31 ? C18 DMU 201 B 1 
HETATM 10 C C19 DMU . . . H 4 80.65 28.878 -10.053 1 77.01 ? C19 DMU 201 B 1 
HETATM 11 C C22 DMU . . . H 4 79.984 29.955 -9.211 1 77.27 ? C22 DMU 201 B 1 
HETATM 12 C C25 DMU . . . H 4 80.056 31.359 -9.79 1 80.65 ? C25 DMU 201 B 1 
HETATM 13 C C28 DMU . . . H 4 78.748 32.136 -9.756 1 84.29 ? C28 DMU 201 B 1 
HETATM 14 C C31 DMU . . . H 4 78.914 33.636 -9.568 1 83.99 ? C31 DMU 201 B 1 
HETATM 15 C C34 DMU . . . H 4 79.23 34.059 -8.14 1 85.64 ? C34 DMU 201 B 1 
HETATM 16 C C37 DMU . . . H 4 78.631 35.403 -7.742 1 87.14 ? C37 DMU 201 B 1 
HETATM 17 C C40 DMU . . . H 4 78.741 35.733 -6.259 1 86.7 ? C40 DMU 201 B 1 
HETATM 18 C C43 DMU . . . H 4 80.162 35.747 -5.751 1 86.04 ? C43 DMU 201 B 1 
HETATM 19 O O49 DMU . . . H 4 80.252 24.295 -11.858 1 68 ? O49 DMU 201 B 1 
HETATM 20 O O55 DMU . . . H 4 81.42 21.779 -11.114 1 68.7 ? O55 DMU 201 B 1 
HETATM 21 C C57 DMU . . . H 4 82.95 23.914 -6.936 1 70.81 ? C57 DMU 201 B 1 
HETATM 22 O O61 DMU . . . H 4 82.937 25.14 -6.227 1 71.6 ? O61 DMU 201 B 1 
HETATM 23 C C5 DMU . . . H 4 82.094 19.152 -8.527 1 74.19 ? C5 DMU 201 B 1 
HETATM 24 C C7 DMU . . . H 4 81.223 18.85 -7.317 1 75.47 ? C7 DMU 201 B 1 
HETATM 25 C C8 DMU . . . H 4 82.083 18.803 -6.064 1 77.71 ? C8 DMU 201 B 1 
HETATM 26 C C9 DMU . . . H 4 82.856 20.11 -5.9 1 77.11 ? C9 DMU 201 B 1 
HETATM 27 O O1 DMU . . . H 4 83.588 20.422 -7.104 1 76.83 ? O1 DMU 201 B 1 
HETATM 28 C C10 DMU . . . H 4 82.821 20.471 -8.302 1 75.18 ? C10 DMU 201 B 1 
HETATM 29 O O2 DMU . . . H 4 81.255 18.608 -4.926 1 80.38 ? O2 DMU 201 B 1 
HETATM 30 O O3 DMU . . . H 4 81.295 19.226 -9.701 1 72.72 ? O3 DMU 201 B 1 
HETATM 31 O O4 DMU . . . H 4 80.552 17.612 -7.494 1 78.33 ? O4 DMU 201 B 1 
HETATM 32 C C11 DMU . . . H 4 83.864 20.043 -4.769 1 77.43 ? C11 DMU 201 B 1 
HETATM 33 O O6 DMU . . . H 4 84.986 20.893 -4.978 1 80.23 ? O6 DMU 201 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           33 
#