data_5KOQ
#
_model_server_result.job_id            i-PZtf2cUqQGh3yllb6GkQ 
_model_server_result.datetime_utc      '2024-11-22 05:13:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5koq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    5KOQ 
#
_exptl.entry_id    5KOQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              413.556 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-~{tert}-butyl-4-(furan-2-ylmethylamino)-~{N}-(2-methylpropyl)-~{N}-[(3~{S})-piperidin-3-yl]pyrimidine-5-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KOQ 
_cell.length_a            138.562 
_cell.length_b            138.562 
_cell.length_c            138.562 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KOQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
A,B,C,D,E,F,G,H,I 3 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0 0 1 -1 0 0 0 -1 0 -69.281 -69.281 0 
3 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -69.281 0 69.281 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 51 1_555 A SG CYS 55 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 214 A CYS 217 1_555 A SG CYS 218 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 256 A CYS 259 1_555 A SG CYS 293 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 48 B CYS 51 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf5 B SG CYS 214 B CYS 217 1_555 B SG CYS 218 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf6 B SG CYS 256 B CYS 259 1_555 B SG CYS 293 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 72 A ASN 75 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 B ND2 ASN 72 B ASN 75 1_555 E C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
#
_chem_comp.formula           'C23 H35 N5 O2' 
_chem_comp.formula_weight    413.556 
_chem_comp.id                6VR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-~{tert}-butyl-4-(furan-2-ylmethylamino)-~{N}-(2-methylpropyl)-~{N}-[(3~{S})-piperidin-3-yl]pyrimidine-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 6VR sing 1 n n 
C8 C7 6VR sing 2 n n 
C9 N10 6VR sing 3 n n 
C7 C6 6VR sing 4 n n 
N10 C11 6VR sing 5 n n 
C6 C11 6VR sing 6 n n 
C6 N5 6VR sing 7 n n 
C4 N5 6VR sing 8 n n 
C4 C2 6VR sing 9 n n 
N5 C12 6VR sing 10 n n 
O13 C12 6VR doub 11 n n 
C12 C14 6VR sing 12 n n 
C2 C3 6VR sing 13 n n 
C2 C1 6VR sing 14 n n 
C15 C14 6VR sing 15 n y 
C15 N16 6VR doub 16 n y 
C14 C19 6VR doub 17 n y 
N16 C17 6VR sing 18 n y 
C19 N20 6VR sing 19 n n 
C19 N18 6VR sing 20 n y 
C17 N18 6VR doub 21 n y 
C17 C27 6VR sing 22 n n 
C29 C27 6VR sing 23 n n 
N20 C21 6VR sing 24 n n 
C28 C27 6VR sing 25 n n 
C27 C30 6VR sing 26 n n 
C21 C22 6VR sing 27 n n 
O26 C22 6VR sing 28 n y 
O26 C25 6VR sing 29 n y 
C22 C23 6VR doub 30 n y 
C25 C24 6VR doub 31 n y 
C23 C24 6VR sing 32 n y 
C4 H1 6VR sing 33 n n 
C4 H2 6VR sing 34 n n 
C6 H3 6VR sing 35 n n 
C7 H4 6VR sing 36 n n 
C7 H5 6VR sing 37 n n 
C8 H6 6VR sing 38 n n 
C8 H7 6VR sing 39 n n 
C15 H8 6VR sing 40 n n 
C21 H9 6VR sing 41 n n 
C21 H10 6VR sing 42 n n 
C24 H11 6VR sing 43 n n 
C28 H12 6VR sing 44 n n 
C28 H13 6VR sing 45 n n 
C28 H14 6VR sing 46 n n 
C1 H15 6VR sing 47 n n 
C1 H16 6VR sing 48 n n 
C1 H17 6VR sing 49 n n 
C2 H18 6VR sing 50 n n 
C3 H19 6VR sing 51 n n 
C3 H20 6VR sing 52 n n 
C3 H21 6VR sing 53 n n 
C9 H22 6VR sing 54 n n 
C9 H23 6VR sing 55 n n 
N10 H24 6VR sing 56 n n 
C11 H26 6VR sing 57 n n 
C11 H27 6VR sing 58 n n 
N20 H28 6VR sing 59 n n 
C23 H29 6VR sing 60 n n 
C25 H30 6VR sing 61 n n 
C29 H31 6VR sing 62 n n 
C29 H32 6VR sing 63 n n 
C29 H33 6VR sing 64 n n 
C30 H34 6VR sing 65 n n 
C30 H35 6VR sing 66 n n 
C30 H36 6VR sing 67 n n 
#
_atom_sites.entry_id                     5KOQ 
_atom_sites.fract_transf_matrix[1][1]    0.007217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007217 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007217 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 400 NAG NAG . 
D 3 6VR A 1 402 500 6VR LIG . 
E 2 NAG B 1 401 410 NAG NAG . 
F 3 6VR B 1 402 510 6VR LIG . 
G 4 PEG B 1 403 610 PEG PEG . 
H 5 HOH A 1 501 6 HOH HOH . 
H 5 HOH A 2 502 8 HOH HOH . 
H 5 HOH A 3 503 19 HOH HOH . 
H 5 HOH A 4 504 2 HOH HOH . 
H 5 HOH A 5 505 5 HOH HOH . 
H 5 HOH A 6 506 16 HOH HOH . 
H 5 HOH A 7 507 18 HOH HOH . 
H 5 HOH A 8 508 1 HOH HOH . 
H 5 HOH A 9 509 17 HOH HOH . 
H 5 HOH A 10 510 46 HOH HOH . 
H 5 HOH A 11 511 60 HOH HOH . 
H 5 HOH A 12 512 47 HOH HOH . 
H 5 HOH A 13 513 80 HOH HOH . 
H 5 HOH A 14 514 70 HOH HOH . 
H 5 HOH A 15 515 79 HOH HOH . 
H 5 HOH A 16 516 14 HOH HOH . 
H 5 HOH A 17 517 82 HOH HOH . 
H 5 HOH A 18 518 86 HOH HOH . 
H 5 HOH A 19 519 4 HOH HOH . 
H 5 HOH A 20 520 49 HOH HOH . 
H 5 HOH A 21 521 84 HOH HOH . 
H 5 HOH A 22 522 76 HOH HOH . 
H 5 HOH A 23 523 75 HOH HOH . 
H 5 HOH A 24 524 21 HOH HOH . 
H 5 HOH A 25 525 81 HOH HOH . 
H 5 HOH A 26 526 51 HOH HOH . 
H 5 HOH A 27 527 55 HOH HOH . 
H 5 HOH A 28 528 83 HOH HOH . 
H 5 HOH A 29 529 34 HOH HOH . 
H 5 HOH A 30 530 38 HOH HOH . 
H 5 HOH A 31 531 32 HOH HOH . 
H 5 HOH A 32 532 13 HOH HOH . 
H 5 HOH A 33 533 22 HOH HOH . 
H 5 HOH A 34 534 50 HOH HOH . 
H 5 HOH A 35 535 85 HOH HOH . 
H 5 HOH A 36 536 39 HOH HOH . 
H 5 HOH A 37 537 20 HOH HOH . 
H 5 HOH A 38 538 42 HOH HOH . 
H 5 HOH A 39 539 71 HOH HOH . 
H 5 HOH A 40 540 58 HOH HOH . 
H 5 HOH A 41 541 72 HOH HOH . 
H 5 HOH A 42 542 43 HOH HOH . 
H 5 HOH A 43 543 9 HOH HOH . 
H 5 HOH A 44 544 40 HOH HOH . 
H 5 HOH A 45 545 12 HOH HOH . 
H 5 HOH A 46 546 74 HOH HOH . 
H 5 HOH A 47 547 56 HOH HOH . 
H 5 HOH A 48 548 53 HOH HOH . 
H 5 HOH A 49 549 73 HOH HOH . 
H 5 HOH A 50 550 48 HOH HOH . 
H 5 HOH A 51 551 57 HOH HOH . 
H 5 HOH A 52 552 28 HOH HOH . 
H 5 HOH A 53 553 54 HOH HOH . 
H 5 HOH A 54 554 29 HOH HOH . 
I 5 HOH B 1 501 7 HOH HOH . 
I 5 HOH B 2 502 66 HOH HOH . 
I 5 HOH B 3 503 27 HOH HOH . 
I 5 HOH B 4 504 15 HOH HOH . 
I 5 HOH B 5 505 62 HOH HOH . 
I 5 HOH B 6 506 24 HOH HOH . 
I 5 HOH B 7 507 59 HOH HOH . 
I 5 HOH B 8 508 68 HOH HOH . 
I 5 HOH B 9 509 64 HOH HOH . 
I 5 HOH B 10 510 65 HOH HOH . 
I 5 HOH B 11 511 36 HOH HOH . 
I 5 HOH B 12 512 11 HOH HOH . 
I 5 HOH B 13 513 87 HOH HOH . 
I 5 HOH B 14 514 41 HOH HOH . 
I 5 HOH B 15 515 77 HOH HOH . 
I 5 HOH B 16 516 30 HOH HOH . 
I 5 HOH B 17 517 37 HOH HOH . 
I 5 HOH B 18 518 44 HOH HOH . 
I 5 HOH B 19 519 67 HOH HOH . 
I 5 HOH B 20 520 10 HOH HOH . 
I 5 HOH B 21 521 63 HOH HOH . 
I 5 HOH B 22 522 23 HOH HOH . 
I 5 HOH B 23 523 78 HOH HOH . 
I 5 HOH B 24 524 35 HOH HOH . 
I 5 HOH B 25 525 31 HOH HOH . 
I 5 HOH B 26 526 26 HOH HOH . 
I 5 HOH B 27 527 3 HOH HOH . 
I 5 HOH B 28 528 52 HOH HOH . 
I 5 HOH B 29 529 33 HOH HOH . 
I 5 HOH B 30 530 45 HOH HOH . 
I 5 HOH B 31 531 25 HOH HOH . 
I 5 HOH B 32 532 61 HOH HOH . 
I 5 HOH B 33 533 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 6VR . . . D 3 -46.602 1.015 8.046 1 50.06 ? C4 6VR 402 A 1 
HETATM 2 C C6 6VR . . . D 3 -44.181 1.022 7.122 1 51.55 ? C6 6VR 402 A 1 
HETATM 3 C C7 6VR . . . D 3 -44.716 1.158 5.676 1 51.74 ? C7 6VR 402 A 1 
HETATM 4 C C8 6VR . . . D 3 -43.647 1.742 4.738 1 52.66 ? C8 6VR 402 A 1 
HETATM 5 C C15 6VR . . . D 3 -46.834 -1.932 9.284 1 48.43 ? C15 6VR 402 A 1 
HETATM 6 C C17 6VR . . . D 3 -47.513 -2.571 11.389 1 48.18 ? C17 6VR 402 A 1 
HETATM 7 C C21 6VR . . . D 3 -44.451 -0.448 13.307 1 47.36 ? C21 6VR 402 A 1 
HETATM 8 C C22 6VR . . . D 3 -43.224 0.32 13.728 1 47.61 ? C22 6VR 402 A 1 
HETATM 9 C C24 6VR . . . D 3 -41.851 1.8 14.638 1 46.2 ? C24 6VR 402 A 1 
HETATM 10 C C28 6VR . . . D 3 -49.894 -2.625 12.088 1 48.39 ? C28 6VR 402 A 1 
HETATM 11 C C1 6VR . . . D 3 -46.198 2.349 10.252 1 47.97 ? C1 6VR 402 A 1 
HETATM 12 C C2 6VR . . . D 3 -46.985 2.21 8.943 1 49.24 ? C2 6VR 402 A 1 
HETATM 13 C C3 6VR . . . D 3 -48.476 2.092 9.267 1 47.53 ? C3 6VR 402 A 1 
HETATM 14 N N5 6VR . . . D 3 -45.207 0.485 8.052 1 50.82 ? N5 6VR 402 A 1 
HETATM 15 C C9 6VR . . . D 3 -43.209 3.11 5.274 1 53.03 ? C9 6VR 402 A 1 
HETATM 16 N N10 6VR . . . D 3 -42.649 2.943 6.632 1 53.49 ? N10 6VR 402 A 1 
HETATM 17 C C11 6VR . . . D 3 -43.571 2.344 7.62 1 52.03 ? C11 6VR 402 A 1 
HETATM 18 C C12 6VR . . . D 3 -44.825 -0.553 8.865 1 50.5 ? C12 6VR 402 A 1 
HETATM 19 O O13 6VR . . . D 3 -43.68 -0.976 8.819 1 52.56 ? O13 6VR 402 A 1 
HETATM 20 C C14 6VR . . . D 3 -45.741 -1.231 9.813 1 48.91 ? C14 6VR 402 A 1 
HETATM 21 N N16 6VR . . . D 3 -47.682 -2.558 10.077 1 47.75 ? N16 6VR 402 A 1 
HETATM 22 N N18 6VR . . . D 3 -46.484 -1.935 11.944 1 48.44 ? N18 6VR 402 A 1 
HETATM 23 C C19 6VR . . . D 3 -45.573 -1.259 11.225 1 47.86 ? C19 6VR 402 A 1 
HETATM 24 N N20 6VR . . . D 3 -44.512 -0.614 11.845 1 47.62 ? N20 6VR 402 A 1 
HETATM 25 C C23 6VR . . . D 3 -43.208 1.424 14.497 1 46.09 ? C23 6VR 402 A 1 
HETATM 26 C C25 6VR . . . D 3 -41.117 0.906 13.951 1 45.52 ? C25 6VR 402 A 1 
HETATM 27 O O26 6VR . . . D 3 -41.954 0.013 13.403 1 47.29 ? O26 6VR 402 A 1 
HETATM 28 C C27 6VR . . . D 3 -48.532 -3.313 12.234 1 48.8 ? C27 6VR 402 A 1 
HETATM 29 C C29 6VR . . . D 3 -48.645 -4.775 11.785 1 48.59 ? C29 6VR 402 A 1 
HETATM 30 C C30 6VR . . . D 3 -48.179 -3.303 13.722 1 48.58 ? C30 6VR 402 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#