data_5KOS # _model_server_result.job_id YLeB3JCRiSJr6EBsLPUodg _model_server_result.datetime_utc '2024-11-07 23:44:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":407}' # _entry.id 5KOS # _exptl.entry_id 5KOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KOS _cell.length_a 137.077 _cell.length_b 137.077 _cell.length_c 137.077 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,T 1 1 B,O,P,Q,R,S,U 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -68.5385 -68.5385 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 68.5385 -68.5385 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 R N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 51 1_555 A SG CYS 55 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 214 A CYS 217 1_555 A SG CYS 218 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 256 A CYS 259 1_555 A SG CYS 293 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 48 B CYS 51 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 214 B CYS 217 1_555 B SG CYS 218 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 B SG CYS 256 B CYS 259 1_555 B SG CYS 293 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5KOS _atom_sites.fract_transf_matrix[1][1] 0.007295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 401 400 NAG NAG . D 3 6VS A 1 402 500 6VS LIG . E 4 DMS A 1 403 700 DMS DMS . F 4 DMS A 1 404 701 DMS DMS . G 4 DMS A 1 405 702 DMS DMS . H 4 DMS A 1 406 703 DMS DMS . I 4 DMS A 1 407 704 DMS DMS . J 4 DMS A 1 408 705 DMS DMS . K 4 DMS A 1 409 706 DMS DMS . L 4 DMS A 1 410 707 DMS DMS . M 5 PEG A 1 411 600 PEG PEG . N 5 PEG A 1 412 601 PEG PEG . O 2 NAG B 1 401 401 NAG NAG . P 3 6VS B 1 402 501 6VS LIG . Q 5 PEG B 1 403 610 PEG PEG . R 4 DMS B 1 404 712 DMS DMS . S 4 DMS B 1 405 713 DMS DMS . T 6 HOH A 1 501 142 HOH HOH . T 6 HOH A 2 502 179 HOH HOH . T 6 HOH A 3 503 2 HOH HOH . T 6 HOH A 4 504 23 HOH HOH . T 6 HOH A 5 505 139 HOH HOH . T 6 HOH A 6 506 47 HOH HOH . T 6 HOH A 7 507 83 HOH HOH . T 6 HOH A 8 508 94 HOH HOH . T 6 HOH A 9 509 18 HOH HOH . T 6 HOH A 10 510 19 HOH HOH . T 6 HOH A 11 511 15 HOH HOH . T 6 HOH A 12 512 44 HOH HOH . T 6 HOH A 13 513 176 HOH HOH . T 6 HOH A 14 514 41 HOH HOH . T 6 HOH A 15 515 6 HOH HOH . T 6 HOH A 16 516 88 HOH HOH . T 6 HOH A 17 517 31 HOH HOH . T 6 HOH A 18 518 11 HOH HOH . T 6 HOH A 19 519 154 HOH HOH . T 6 HOH A 20 520 95 HOH HOH . T 6 HOH A 21 521 96 HOH HOH . T 6 HOH A 22 522 160 HOH HOH . T 6 HOH A 23 523 80 HOH HOH . T 6 HOH A 24 524 189 HOH HOH . T 6 HOH A 25 525 155 HOH HOH . T 6 HOH A 26 526 71 HOH HOH . T 6 HOH A 27 527 110 HOH HOH . T 6 HOH A 28 528 119 HOH HOH . T 6 HOH A 29 529 20 HOH HOH . T 6 HOH A 30 530 60 HOH HOH . T 6 HOH A 31 531 67 HOH HOH . T 6 HOH A 32 532 63 HOH HOH . T 6 HOH A 33 533 153 HOH HOH . T 6 HOH A 34 534 62 HOH HOH . T 6 HOH A 35 535 108 HOH HOH . T 6 HOH A 36 536 21 HOH HOH . T 6 HOH A 37 537 4 HOH HOH . T 6 HOH A 38 538 39 HOH HOH . T 6 HOH A 39 539 195 HOH HOH . T 6 HOH A 40 540 148 HOH HOH . T 6 HOH A 41 541 61 HOH HOH . T 6 HOH A 42 542 24 HOH HOH . T 6 HOH A 43 543 196 HOH HOH . T 6 HOH A 44 544 207 HOH HOH . T 6 HOH A 45 545 5 HOH HOH . T 6 HOH A 46 546 68 HOH HOH . T 6 HOH A 47 547 26 HOH HOH . T 6 HOH A 48 548 143 HOH HOH . T 6 HOH A 49 549 48 HOH HOH . T 6 HOH A 50 550 7 HOH HOH . T 6 HOH A 51 551 34 HOH HOH . T 6 HOH A 52 552 10 HOH HOH . T 6 HOH A 53 553 205 HOH HOH . T 6 HOH A 54 554 35 HOH HOH . T 6 HOH A 55 555 17 HOH HOH . T 6 HOH A 56 556 36 HOH HOH . T 6 HOH A 57 557 168 HOH HOH . T 6 HOH A 58 558 105 HOH HOH . T 6 HOH A 59 559 81 HOH HOH . T 6 HOH A 60 560 116 HOH HOH . T 6 HOH A 61 561 190 HOH HOH . T 6 HOH A 62 562 171 HOH HOH . T 6 HOH A 63 563 159 HOH HOH . T 6 HOH A 64 564 65 HOH HOH . T 6 HOH A 65 565 149 HOH HOH . T 6 HOH A 66 566 40 HOH HOH . T 6 HOH A 67 567 134 HOH HOH . T 6 HOH A 68 568 92 HOH HOH . T 6 HOH A 69 569 170 HOH HOH . T 6 HOH A 70 570 107 HOH HOH . T 6 HOH A 71 571 117 HOH HOH . T 6 HOH A 72 572 120 HOH HOH . T 6 HOH A 73 573 101 HOH HOH . T 6 HOH A 74 574 200 HOH HOH . T 6 HOH A 75 575 163 HOH HOH . T 6 HOH A 76 576 112 HOH HOH . T 6 HOH A 77 577 206 HOH HOH . T 6 HOH A 78 578 210 HOH HOH . T 6 HOH A 79 579 109 HOH HOH . T 6 HOH A 80 580 208 HOH HOH . T 6 HOH A 81 581 144 HOH HOH . T 6 HOH A 82 582 64 HOH HOH . T 6 HOH A 83 583 140 HOH HOH . T 6 HOH A 84 584 91 HOH HOH . T 6 HOH A 85 585 201 HOH HOH . T 6 HOH A 86 586 131 HOH HOH . T 6 HOH A 87 587 126 HOH HOH . T 6 HOH A 88 588 89 HOH HOH . T 6 HOH A 89 589 130 HOH HOH . T 6 HOH A 90 590 55 HOH HOH . T 6 HOH A 91 591 164 HOH HOH . T 6 HOH A 92 592 113 HOH HOH . T 6 HOH A 93 593 99 HOH HOH . T 6 HOH A 94 594 128 HOH HOH . T 6 HOH A 95 595 141 HOH HOH . T 6 HOH A 96 596 136 HOH HOH . T 6 HOH A 97 597 191 HOH HOH . T 6 HOH A 98 598 199 HOH HOH . T 6 HOH A 99 599 132 HOH HOH . T 6 HOH A 100 600 127 HOH HOH . T 6 HOH A 101 601 137 HOH HOH . T 6 HOH A 102 602 135 HOH HOH . T 6 HOH A 103 603 185 HOH HOH . T 6 HOH A 104 604 114 HOH HOH . U 6 HOH B 1 501 45 HOH HOH . U 6 HOH B 2 502 182 HOH HOH . U 6 HOH B 3 503 147 HOH HOH . U 6 HOH B 4 504 29 HOH HOH . U 6 HOH B 5 505 78 HOH HOH . U 6 HOH B 6 506 46 HOH HOH . U 6 HOH B 7 507 87 HOH HOH . U 6 HOH B 8 508 28 HOH HOH . U 6 HOH B 9 509 27 HOH HOH . U 6 HOH B 10 510 79 HOH HOH . U 6 HOH B 11 511 54 HOH HOH . U 6 HOH B 12 512 42 HOH HOH . U 6 HOH B 13 513 33 HOH HOH . U 6 HOH B 14 514 74 HOH HOH . U 6 HOH B 15 515 151 HOH HOH . U 6 HOH B 16 516 12 HOH HOH . U 6 HOH B 17 517 13 HOH HOH . U 6 HOH B 18 518 37 HOH HOH . U 6 HOH B 19 519 75 HOH HOH . U 6 HOH B 20 520 180 HOH HOH . U 6 HOH B 21 521 9 HOH HOH . U 6 HOH B 22 522 157 HOH HOH . U 6 HOH B 23 523 22 HOH HOH . U 6 HOH B 24 524 172 HOH HOH . U 6 HOH B 25 525 188 HOH HOH . U 6 HOH B 26 526 59 HOH HOH . U 6 HOH B 27 527 86 HOH HOH . U 6 HOH B 28 528 150 HOH HOH . U 6 HOH B 29 529 8 HOH HOH . U 6 HOH B 30 530 115 HOH HOH . U 6 HOH B 31 531 53 HOH HOH . U 6 HOH B 32 532 111 HOH HOH . U 6 HOH B 33 533 125 HOH HOH . U 6 HOH B 34 534 70 HOH HOH . U 6 HOH B 35 535 69 HOH HOH . U 6 HOH B 36 536 183 HOH HOH . U 6 HOH B 37 537 58 HOH HOH . U 6 HOH B 38 538 146 HOH HOH . U 6 HOH B 39 539 52 HOH HOH . U 6 HOH B 40 540 93 HOH HOH . U 6 HOH B 41 541 100 HOH HOH . U 6 HOH B 42 542 3 HOH HOH . U 6 HOH B 43 543 145 HOH HOH . U 6 HOH B 44 544 98 HOH HOH . U 6 HOH B 45 545 1 HOH HOH . U 6 HOH B 46 546 30 HOH HOH . U 6 HOH B 47 547 51 HOH HOH . U 6 HOH B 48 548 209 HOH HOH . U 6 HOH B 49 549 49 HOH HOH . U 6 HOH B 50 550 56 HOH HOH . U 6 HOH B 51 551 82 HOH HOH . U 6 HOH B 52 552 32 HOH HOH . U 6 HOH B 53 553 85 HOH HOH . U 6 HOH B 54 554 203 HOH HOH . U 6 HOH B 55 555 57 HOH HOH . U 6 HOH B 56 556 106 HOH HOH . U 6 HOH B 57 557 77 HOH HOH . U 6 HOH B 58 558 156 HOH HOH . U 6 HOH B 59 559 166 HOH HOH . U 6 HOH B 60 560 167 HOH HOH . U 6 HOH B 61 561 177 HOH HOH . U 6 HOH B 62 562 104 HOH HOH . U 6 HOH B 63 563 181 HOH HOH . U 6 HOH B 64 564 38 HOH HOH . U 6 HOH B 65 565 14 HOH HOH . U 6 HOH B 66 566 76 HOH HOH . U 6 HOH B 67 567 173 HOH HOH . U 6 HOH B 68 568 152 HOH HOH . U 6 HOH B 69 569 175 HOH HOH . U 6 HOH B 70 570 97 HOH HOH . U 6 HOH B 71 571 66 HOH HOH . U 6 HOH B 72 572 73 HOH HOH . U 6 HOH B 73 573 178 HOH HOH . U 6 HOH B 74 574 162 HOH HOH . U 6 HOH B 75 575 25 HOH HOH . U 6 HOH B 76 576 165 HOH HOH . U 6 HOH B 77 577 198 HOH HOH . U 6 HOH B 78 578 184 HOH HOH . U 6 HOH B 79 579 169 HOH HOH . U 6 HOH B 80 580 158 HOH HOH . U 6 HOH B 81 581 84 HOH HOH . U 6 HOH B 82 582 43 HOH HOH . U 6 HOH B 83 583 193 HOH HOH . U 6 HOH B 84 584 124 HOH HOH . U 6 HOH B 85 585 102 HOH HOH . U 6 HOH B 86 586 90 HOH HOH . U 6 HOH B 87 587 72 HOH HOH . U 6 HOH B 88 588 50 HOH HOH . U 6 HOH B 89 589 122 HOH HOH . U 6 HOH B 90 590 202 HOH HOH . U 6 HOH B 91 591 194 HOH HOH . U 6 HOH B 92 592 187 HOH HOH . U 6 HOH B 93 593 138 HOH HOH . U 6 HOH B 94 594 133 HOH HOH . U 6 HOH B 95 595 16 HOH HOH . U 6 HOH B 96 596 161 HOH HOH . U 6 HOH B 97 597 186 HOH HOH . U 6 HOH B 98 598 204 HOH HOH . U 6 HOH B 99 599 123 HOH HOH . U 6 HOH B 100 600 118 HOH HOH . U 6 HOH B 101 601 121 HOH HOH . U 6 HOH B 102 602 197 HOH HOH . U 6 HOH B 103 603 174 HOH HOH . U 6 HOH B 104 604 192 HOH HOH . U 6 HOH B 105 605 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 4 3.585 -41.674 -13.01 0.8 74.17 ? S DMS 407 A 1 HETATM 2 O O DMS . . . I 4 4.43 -40.505 -12.694 0.8 68.85 ? O DMS 407 A 1 HETATM 3 C C1 DMS . . . I 4 4.041 -42.299 -14.532 0.8 72.94 ? C1 DMS 407 A 1 HETATM 4 C C2 DMS . . . I 4 4.006 -42.988 -12.004 0.8 74.99 ? C2 DMS 407 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #