data_5KOY
#
_model_server_result.job_id            1OsIwMGAB96OGG4_3gaRLA 
_model_server_result.datetime_utc      '2024-11-26 17:35:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5koy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2000}' 
#
_entry.id    5KOY 
#
_exptl.entry_id    5KOY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5KOY 
_cell.length_a            97.52 
_cell.length_b            116.439 
_cell.length_c            375.052 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KOY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     5KOY 
_atom_sites.fract_transf_matrix[1][1]    0.010254 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008588 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002666 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATP A 1 2000 2000 ATP ATP . 
D 2 ATP B 1 2000 2000 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . D 2 79.65 51.694 50.297 1 274.95 ? PG ATP 2000 B 1 
HETATM 2 O O1G ATP . . . D 2 79.997 52.989 49.603 1 258.57 ? O1G ATP 2000 B 1 
HETATM 3 O O2G ATP . . . D 2 78.175 51.486 50.539 1 257.38 ? O2G ATP 2000 B 1 
HETATM 4 O O3G ATP . . . D 2 80.371 50.485 49.752 1 258.57 ? O3G ATP 2000 B 1 
HETATM 5 P PB ATP . . . D 2 80.128 53.277 52.546 1 249.26 ? PB ATP 2000 B 1 
HETATM 6 O O1B ATP . . . D 2 78.784 53.878 52.21 1 236.71 ? O1B ATP 2000 B 1 
HETATM 7 O O2B ATP . . . D 2 81.389 54.074 52.321 1 238.52 ? O2B ATP 2000 B 1 
HETATM 8 O O3B ATP . . . D 2 80.259 51.87 51.776 1 238.59 ? O3B ATP 2000 B 1 
HETATM 9 P PA ATP . . . D 2 80.725 53.81 55.2 1 212.9 ? PA ATP 2000 B 1 
HETATM 10 O O1A ATP . . . D 2 82.223 53.827 55.013 1 202.17 ? O1A ATP 2000 B 1 
HETATM 11 O O2A ATP . . . D 2 79.951 55.106 55.175 1 202.7 ? O2A ATP 2000 B 1 
HETATM 12 O O3A ATP . . . D 2 80.113 52.826 54.088 1 219.89 ? O3A ATP 2000 B 1 
HETATM 13 O O5' ATP . . . D 2 80.385 53.043 56.572 1 205.32 ? O5' ATP 2000 B 1 
HETATM 14 C C5' ATP . . . D 2 81.095 53.384 57.758 1 205.11 ? C5' ATP 2000 B 1 
HETATM 15 C C4' ATP . . . D 2 80.225 53.151 58.985 1 199.95 ? C4' ATP 2000 B 1 
HETATM 16 O O4' ATP . . . D 2 78.96 53.798 58.85 1 209.22 ? O4' ATP 2000 B 1 
HETATM 17 C C3' ATP . . . D 2 79.93 51.683 59.278 1 199.97 ? C3' ATP 2000 B 1 
HETATM 18 O O3' ATP . . . D 2 80.786 51.25 60.344 1 195.99 ? O3' ATP 2000 B 1 
HETATM 19 C C2' ATP . . . D 2 78.459 51.636 59.667 1 207.33 ? C2' ATP 2000 B 1 
HETATM 20 O O2' ATP . . . D 2 78.253 51.093 60.979 1 205 ? O2' ATP 2000 B 1 
HETATM 21 C C1' ATP . . . D 2 78.035 53.094 59.681 1 207.02 ? C1' ATP 2000 B 1 
HETATM 22 N N9 ATP . . . D 2 76.633 53.346 59.251 1 228.15 ? N9 ATP 2000 B 1 
HETATM 23 C C8 ATP . . . D 2 76.181 53.456 57.986 1 212.22 ? C8 ATP 2000 B 1 
HETATM 24 N N7 ATP . . . D 2 74.843 53.701 57.978 1 223.39 ? N7 ATP 2000 B 1 
HETATM 25 C C5 ATP . . . D 2 74.426 53.758 59.257 1 239.51 ? C5 ATP 2000 B 1 
HETATM 26 C C6 ATP . . . D 2 73.143 53.982 59.963 1 220.13 ? C6 ATP 2000 B 1 
HETATM 27 N N6 ATP . . . D 2 71.994 54.203 59.28 1 231.36 ? N6 ATP 2000 B 1 
HETATM 28 N N1 ATP . . . D 2 73.156 53.959 61.314 1 225.78 ? N1 ATP 2000 B 1 
HETATM 29 C C2 ATP . . . D 2 74.282 53.743 62.019 1 217.22 ? C2 ATP 2000 B 1 
HETATM 30 N N3 ATP . . . D 2 75.476 53.533 61.438 1 217.43 ? N3 ATP 2000 B 1 
HETATM 31 C C4 ATP . . . D 2 75.612 53.528 60.09 1 212.83 ? C4 ATP 2000 B 1 
HETATM 32 H "H5'1" ATP . . . D 2 81.394 54.434 57.716 1 246.14 ? "H5'1" ATP 2000 B 1 
HETATM 33 H "H5'2" ATP . . . D 2 82 52.778 57.83 1 246.14 ? "H5'2" ATP 2000 B 1 
HETATM 34 H H4' ATP . . . D 2 80.75 53.569 59.854 1 239.94 ? H4' ATP 2000 B 1 
HETATM 35 H H3' ATP . . . D 2 80.095 51.083 58.372 1 239.96 ? H3' ATP 2000 B 1 
HETATM 36 H HO3' ATP . . . D 2 80.61 50.319 60.541 1 235.19 ? HO3' ATP 2000 B 1 
HETATM 37 H H2' ATP . . . D 2 77.884 51.084 58.911 1 248.8 ? H2' ATP 2000 B 1 
HETATM 38 H HO2' ATP . . . D 2 78.576 50.183 61.006 1 246 ? HO2' ATP 2000 B 1 
HETATM 39 H H1' ATP . . . D 2 78.149 53.456 60.712 1 248.42 ? H1' ATP 2000 B 1 
HETATM 40 H H8 ATP . . . D 2 76.795 53.355 57.1 1 254.66 ? H8 ATP 2000 B 1 
HETATM 41 H HN61 ATP . . . D 2 72.001 54.216 58.27 1 277.63 ? HN61 ATP 2000 B 1 
HETATM 42 H HN62 ATP . . . D 2 71.13 54.354 59.781 1 277.63 ? HN62 ATP 2000 B 1 
HETATM 43 H H2 ATP . . . D 2 74.223 53.738 63.101 1 260.66 ? H2 ATP 2000 B 1 
#
_model_server_stats.io_time_ms              424 
_model_server_stats.parse_time_ms           62 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#