data_5KPC
#
_model_server_result.job_id            qIpyir4Au3JTUI4vpPK4jQ 
_model_server_result.datetime_utc      '2025-02-27 07:21:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kpc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    5KPC 
#
_exptl.entry_id    5KPC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.96 
_cell.angle_gamma         90 
_cell.entry_id            5KPC 
_cell.length_a            54.22 
_cell.length_b            71.74 
_cell.length_c            96.31 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KPC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 277 n n 
N HN1 SAM sing 278 n n 
N HN2 SAM sing 279 n n 
CA C SAM sing 280 n n 
CA CB SAM sing 281 n n 
CA HA SAM sing 282 n n 
C O SAM doub 283 n n 
C OXT SAM sing 284 n n 
CB CG SAM sing 285 n n 
CB HB1 SAM sing 286 n n 
CB HB2 SAM sing 287 n n 
CG SD SAM sing 288 n n 
CG HG1 SAM sing 289 n n 
CG HG2 SAM sing 290 n n 
SD CE SAM sing 291 n n 
SD C5' SAM sing 292 n n 
CE HE1 SAM sing 293 n n 
CE HE2 SAM sing 294 n n 
CE HE3 SAM sing 295 n n 
C5' C4' SAM sing 296 n n 
C5' "H5'1" SAM sing 297 n n 
C5' "H5'2" SAM sing 298 n n 
C4' O4' SAM sing 299 n n 
C4' C3' SAM sing 300 n n 
C4' H4' SAM sing 301 n n 
O4' C1' SAM sing 302 n n 
C3' O3' SAM sing 303 n n 
C3' C2' SAM sing 304 n n 
C3' H3' SAM sing 305 n n 
O3' HO3' SAM sing 306 n n 
C2' O2' SAM sing 307 n n 
C2' C1' SAM sing 308 n n 
C2' H2' SAM sing 309 n n 
O2' HO2' SAM sing 310 n n 
C1' N9 SAM sing 311 n n 
C1' H1' SAM sing 312 n n 
N9 C8 SAM sing 313 n y 
N9 C4 SAM sing 314 n y 
C8 N7 SAM doub 315 n y 
C8 H8 SAM sing 316 n n 
N7 C5 SAM sing 317 n y 
C5 C6 SAM sing 318 n y 
C5 C4 SAM doub 319 n y 
C6 N6 SAM sing 320 n n 
C6 N1 SAM doub 321 n y 
N6 HN61 SAM sing 322 n n 
N6 HN62 SAM sing 323 n n 
N1 C2 SAM sing 324 n y 
C2 N3 SAM doub 325 n y 
C2 H2 SAM sing 326 n n 
N3 C4 SAM sing 327 n y 
#
_atom_sites.entry_id                     5KPC 
_atom_sites.fract_transf_matrix[1][1]    0.018443 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002909 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013939 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010511 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAM A 1 401 1 SAM SAM . 
D 2 SAM B 1 401 1 SAM SAM . 
E 3 HOH A 1 501 3 HOH HOH . 
E 3 HOH A 2 502 54 HOH HOH . 
E 3 HOH A 3 503 26 HOH HOH . 
E 3 HOH A 4 504 4 HOH HOH . 
E 3 HOH A 5 505 30 HOH HOH . 
E 3 HOH A 6 506 46 HOH HOH . 
E 3 HOH A 7 507 28 HOH HOH . 
E 3 HOH A 8 508 5 HOH HOH . 
E 3 HOH A 9 509 8 HOH HOH . 
E 3 HOH A 10 510 16 HOH HOH . 
E 3 HOH A 11 511 2 HOH HOH . 
E 3 HOH A 12 512 20 HOH HOH . 
E 3 HOH A 13 513 61 HOH HOH . 
E 3 HOH A 14 514 27 HOH HOH . 
E 3 HOH A 15 515 53 HOH HOH . 
E 3 HOH A 16 516 38 HOH HOH . 
E 3 HOH A 17 517 19 HOH HOH . 
E 3 HOH A 18 518 6 HOH HOH . 
E 3 HOH A 19 519 62 HOH HOH . 
E 3 HOH A 20 520 65 HOH HOH . 
E 3 HOH A 21 521 18 HOH HOH . 
E 3 HOH A 22 522 9 HOH HOH . 
E 3 HOH A 23 523 47 HOH HOH . 
E 3 HOH A 24 524 29 HOH HOH . 
F 3 HOH B 1 501 35 HOH HOH . 
F 3 HOH B 2 502 25 HOH HOH . 
F 3 HOH B 3 503 10 HOH HOH . 
F 3 HOH B 4 504 42 HOH HOH . 
F 3 HOH B 5 505 1 HOH HOH . 
F 3 HOH B 6 506 64 HOH HOH . 
F 3 HOH B 7 507 7 HOH HOH . 
F 3 HOH B 8 508 24 HOH HOH . 
F 3 HOH B 9 509 33 HOH HOH . 
F 3 HOH B 10 510 11 HOH HOH . 
F 3 HOH B 11 511 12 HOH HOH . 
F 3 HOH B 12 512 21 HOH HOH . 
F 3 HOH B 13 513 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . D 2 3.158 65.579 -37.24 1 53.67 ? N SAM 401 B 1 
HETATM 2 C CA SAM . . . D 2 3.279 66.904 -37.864 1 57.69 ? CA SAM 401 B 1 
HETATM 3 C C SAM . . . D 2 2.352 67.873 -37.132 1 53.59 ? C SAM 401 B 1 
HETATM 4 O O SAM . . . D 2 2.484 69.211 -37.377 1 52.22 ? O SAM 401 B 1 
HETATM 5 O OXT SAM . . . D 2 1.55 67.381 -36.367 1 46.97 ? OXT SAM 401 B 1 
HETATM 6 C CB SAM . . . D 2 2.92 66.828 -39.365 1 61.53 ? CB SAM 401 B 1 
HETATM 7 C CG SAM . . . D 2 2.309 65.496 -39.803 1 58.79 ? CG SAM 401 B 1 
HETATM 8 S SD SAM . . . D 2 3.402 64.202 -40.17 1 88.02 ? SD SAM 401 B 1 
HETATM 9 C CE SAM . . . D 2 3.043 63.539 -41.797 1 70.68 ? CE SAM 401 B 1 
HETATM 10 C C5' SAM . . . D 2 5.099 64.554 -40.001 1 66.83 ? C5' SAM 401 B 1 
HETATM 11 C C4' SAM . . . D 2 5.834 65.728 -40.747 1 61.19 ? C4' SAM 401 B 1 
HETATM 12 O O4' SAM . . . D 2 7.246 65.45 -40.647 1 67.41 ? O4' SAM 401 B 1 
HETATM 13 C C3' SAM . . . D 2 5.504 65.944 -42.227 1 62.07 ? C3' SAM 401 B 1 
HETATM 14 O O3' SAM . . . D 2 4.979 67.246 -42.466 1 58.73 ? O3' SAM 401 B 1 
HETATM 15 C C2' SAM . . . D 2 6.81 65.622 -42.991 1 64.25 ? C2' SAM 401 B 1 
HETATM 16 O O2' SAM . . . D 2 7.395 66.625 -43.816 1 58.19 ? O2' SAM 401 B 1 
HETATM 17 C C1' SAM . . . D 2 7.834 65.256 -41.917 1 64.03 ? C1' SAM 401 B 1 
HETATM 18 N N9 SAM . . . D 2 8.318 63.88 -42.053 1 68.12 ? N9 SAM 401 B 1 
HETATM 19 C C8 SAM . . . D 2 7.587 62.785 -42.445 1 69.93 ? C8 SAM 401 B 1 
HETATM 20 N N7 SAM . . . D 2 8.287 61.677 -42.544 1 63.68 ? N7 SAM 401 B 1 
HETATM 21 C C5 SAM . . . D 2 9.575 62.076 -42.214 1 68.46 ? C5 SAM 401 B 1 
HETATM 22 C C6 SAM . . . D 2 10.794 61.373 -42.128 1 63.64 ? C6 SAM 401 B 1 
HETATM 23 N N6 SAM . . . D 2 10.919 60.064 -42.374 1 64.57 ? N6 SAM 401 B 1 
HETATM 24 N N1 SAM . . . D 2 11.897 62.077 -41.778 1 61.97 ? N1 SAM 401 B 1 
HETATM 25 C C2 SAM . . . D 2 11.781 63.386 -41.541 1 57.99 ? C2 SAM 401 B 1 
HETATM 26 N N3 SAM . . . D 2 10.688 64.151 -41.58 1 57.47 ? N3 SAM 401 B 1 
HETATM 27 C C4 SAM . . . D 2 9.613 63.434 -41.929 1 65.55 ? C4 SAM 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#