data_5KPF # _model_server_result.job_id 9DeqKNdRIiQnoIgb3oTuMQ _model_server_result.datetime_utc '2024-11-18 09:45:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5KPF # _exptl.entry_id 5KPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5KPF _cell.length_a 34.417 _cell.length_b 61.085 _cell.length_c 173.403 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? covale ? covale3 B SG CYS 19 B CYS 14 1_555 E CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? covale ? covale4 B SG CYS 22 B CYS 17 1_555 E CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 A SD MET 85 A MET 80 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 B NE2 HIS 23 B HIS 18 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 B SD MET 85 B MET 80 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 404 n n N O2 NO3 sing 405 n n N O3 NO3 sing 406 n n # _atom_sites.entry_id 5KPF _atom_sites.fract_transf_matrix[1][1] 0.029055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 104 HEC HEM . D 3 NO3 A 1 202 1 NO3 NO3 . E 2 HEC B 1 201 104 HEC HEM . F 4 6VJ B 1 202 1 6VJ Ph1 . G 5 HOH A 1 301 235 HOH HOH . G 5 HOH A 2 302 75 HOH HOH . G 5 HOH A 3 303 210 HOH HOH . G 5 HOH A 4 304 204 HOH HOH . G 5 HOH A 5 305 250 HOH HOH . G 5 HOH A 6 306 92 HOH HOH . G 5 HOH A 7 307 144 HOH HOH . G 5 HOH A 8 308 172 HOH HOH . G 5 HOH A 9 309 31 HOH HOH . G 5 HOH A 10 310 212 HOH HOH . G 5 HOH A 11 311 123 HOH HOH . G 5 HOH A 12 312 177 HOH HOH . G 5 HOH A 13 313 48 HOH HOH . G 5 HOH A 14 314 169 HOH HOH . G 5 HOH A 15 315 26 HOH HOH . G 5 HOH A 16 316 5 HOH HOH . G 5 HOH A 17 317 122 HOH HOH . G 5 HOH A 18 318 40 HOH HOH . G 5 HOH A 19 319 151 HOH HOH . G 5 HOH A 20 320 188 HOH HOH . G 5 HOH A 21 321 39 HOH HOH . G 5 HOH A 22 322 195 HOH HOH . G 5 HOH A 23 323 12 HOH HOH . G 5 HOH A 24 324 15 HOH HOH . G 5 HOH A 25 325 219 HOH HOH . G 5 HOH A 26 326 156 HOH HOH . G 5 HOH A 27 327 180 HOH HOH . G 5 HOH A 28 328 161 HOH HOH . G 5 HOH A 29 329 88 HOH HOH . G 5 HOH A 30 330 9 HOH HOH . G 5 HOH A 31 331 49 HOH HOH . G 5 HOH A 32 332 1 HOH HOH . G 5 HOH A 33 333 84 HOH HOH . G 5 HOH A 34 334 46 HOH HOH . G 5 HOH A 35 335 173 HOH HOH . G 5 HOH A 36 336 43 HOH HOH . G 5 HOH A 37 337 90 HOH HOH . G 5 HOH A 38 338 112 HOH HOH . G 5 HOH A 39 339 117 HOH HOH . G 5 HOH A 40 340 206 HOH HOH . G 5 HOH A 41 341 33 HOH HOH . G 5 HOH A 42 342 78 HOH HOH . G 5 HOH A 43 343 121 HOH HOH . G 5 HOH A 44 344 181 HOH HOH . G 5 HOH A 45 345 6 HOH HOH . G 5 HOH A 46 346 36 HOH HOH . G 5 HOH A 47 347 73 HOH HOH . G 5 HOH A 48 348 202 HOH HOH . G 5 HOH A 49 349 4 HOH HOH . G 5 HOH A 50 350 197 HOH HOH . G 5 HOH A 51 351 60 HOH HOH . G 5 HOH A 52 352 91 HOH HOH . G 5 HOH A 53 353 227 HOH HOH . G 5 HOH A 54 354 61 HOH HOH . G 5 HOH A 55 355 242 HOH HOH . G 5 HOH A 56 356 82 HOH HOH . G 5 HOH A 57 357 21 HOH HOH . G 5 HOH A 58 358 237 HOH HOH . G 5 HOH A 59 359 228 HOH HOH . G 5 HOH A 60 360 167 HOH HOH . G 5 HOH A 61 361 83 HOH HOH . G 5 HOH A 62 362 29 HOH HOH . G 5 HOH A 63 363 72 HOH HOH . G 5 HOH A 64 364 102 HOH HOH . G 5 HOH A 65 365 109 HOH HOH . G 5 HOH A 66 366 45 HOH HOH . G 5 HOH A 67 367 98 HOH HOH . G 5 HOH A 68 368 59 HOH HOH . G 5 HOH A 69 369 93 HOH HOH . G 5 HOH A 70 370 32 HOH HOH . G 5 HOH A 71 371 3 HOH HOH . G 5 HOH A 72 372 111 HOH HOH . G 5 HOH A 73 373 165 HOH HOH . G 5 HOH A 74 374 245 HOH HOH . G 5 HOH A 75 375 80 HOH HOH . G 5 HOH A 76 376 100 HOH HOH . G 5 HOH A 77 377 162 HOH HOH . G 5 HOH A 78 378 128 HOH HOH . G 5 HOH A 79 379 101 HOH HOH . G 5 HOH A 80 380 131 HOH HOH . G 5 HOH A 81 381 154 HOH HOH . G 5 HOH A 82 382 22 HOH HOH . G 5 HOH A 83 383 234 HOH HOH . G 5 HOH A 84 384 163 HOH HOH . G 5 HOH A 85 385 196 HOH HOH . G 5 HOH A 86 386 221 HOH HOH . G 5 HOH A 87 387 103 HOH HOH . G 5 HOH A 88 388 69 HOH HOH . G 5 HOH A 89 389 157 HOH HOH . G 5 HOH A 90 390 57 HOH HOH . G 5 HOH A 91 391 170 HOH HOH . G 5 HOH A 92 392 126 HOH HOH . G 5 HOH A 93 393 191 HOH HOH . G 5 HOH A 94 394 207 HOH HOH . G 5 HOH A 95 395 146 HOH HOH . G 5 HOH A 96 396 107 HOH HOH . G 5 HOH A 97 397 13 HOH HOH . G 5 HOH A 98 398 236 HOH HOH . G 5 HOH A 99 399 62 HOH HOH . G 5 HOH A 100 400 110 HOH HOH . G 5 HOH A 101 401 133 HOH HOH . G 5 HOH A 102 402 142 HOH HOH . G 5 HOH A 103 403 174 HOH HOH . G 5 HOH A 104 404 178 HOH HOH . G 5 HOH A 105 405 230 HOH HOH . G 5 HOH A 106 406 205 HOH HOH . G 5 HOH A 107 407 185 HOH HOH . G 5 HOH A 108 408 220 HOH HOH . G 5 HOH A 109 409 94 HOH HOH . G 5 HOH A 110 410 264 HOH HOH . G 5 HOH A 111 411 152 HOH HOH . G 5 HOH A 112 412 226 HOH HOH . G 5 HOH A 113 413 189 HOH HOH . G 5 HOH A 114 414 79 HOH HOH . G 5 HOH A 115 415 223 HOH HOH . G 5 HOH A 116 416 258 HOH HOH . G 5 HOH A 117 417 52 HOH HOH . G 5 HOH A 118 418 96 HOH HOH . G 5 HOH A 119 419 149 HOH HOH . G 5 HOH A 120 420 55 HOH HOH . G 5 HOH A 121 421 166 HOH HOH . G 5 HOH A 122 422 113 HOH HOH . G 5 HOH A 123 423 218 HOH HOH . G 5 HOH A 124 424 74 HOH HOH . G 5 HOH A 125 425 216 HOH HOH . G 5 HOH A 126 426 262 HOH HOH . G 5 HOH A 127 427 71 HOH HOH . G 5 HOH A 128 428 200 HOH HOH . G 5 HOH A 129 429 224 HOH HOH . G 5 HOH A 130 430 127 HOH HOH . G 5 HOH A 131 431 263 HOH HOH . G 5 HOH A 132 432 217 HOH HOH . G 5 HOH A 133 433 175 HOH HOH . G 5 HOH A 134 434 208 HOH HOH . H 5 HOH B 1 301 182 HOH HOH . H 5 HOH B 2 302 194 HOH HOH . H 5 HOH B 3 303 266 HOH HOH . H 5 HOH B 4 304 104 HOH HOH . H 5 HOH B 5 305 136 HOH HOH . H 5 HOH B 6 306 77 HOH HOH . H 5 HOH B 7 307 132 HOH HOH . H 5 HOH B 8 308 139 HOH HOH . H 5 HOH B 9 309 7 HOH HOH . H 5 HOH B 10 310 106 HOH HOH . H 5 HOH B 11 311 89 HOH HOH . H 5 HOH B 12 312 37 HOH HOH . H 5 HOH B 13 313 105 HOH HOH . H 5 HOH B 14 314 87 HOH HOH . H 5 HOH B 15 315 116 HOH HOH . H 5 HOH B 16 316 30 HOH HOH . H 5 HOH B 17 317 229 HOH HOH . H 5 HOH B 18 318 20 HOH HOH . H 5 HOH B 19 319 147 HOH HOH . H 5 HOH B 20 320 65 HOH HOH . H 5 HOH B 21 321 134 HOH HOH . H 5 HOH B 22 322 68 HOH HOH . H 5 HOH B 23 323 24 HOH HOH . H 5 HOH B 24 324 215 HOH HOH . H 5 HOH B 25 325 108 HOH HOH . H 5 HOH B 26 326 99 HOH HOH . H 5 HOH B 27 327 27 HOH HOH . H 5 HOH B 28 328 47 HOH HOH . H 5 HOH B 29 329 44 HOH HOH . H 5 HOH B 30 330 2 HOH HOH . H 5 HOH B 31 331 255 HOH HOH . H 5 HOH B 32 332 19 HOH HOH . H 5 HOH B 33 333 66 HOH HOH . H 5 HOH B 34 334 11 HOH HOH . H 5 HOH B 35 335 86 HOH HOH . H 5 HOH B 36 336 64 HOH HOH . H 5 HOH B 37 337 17 HOH HOH . H 5 HOH B 38 338 18 HOH HOH . H 5 HOH B 39 339 254 HOH HOH . H 5 HOH B 40 340 209 HOH HOH . H 5 HOH B 41 341 193 HOH HOH . H 5 HOH B 42 342 246 HOH HOH . H 5 HOH B 43 343 129 HOH HOH . H 5 HOH B 44 344 76 HOH HOH . H 5 HOH B 45 345 8 HOH HOH . H 5 HOH B 46 346 16 HOH HOH . H 5 HOH B 47 347 120 HOH HOH . H 5 HOH B 48 348 190 HOH HOH . H 5 HOH B 49 349 130 HOH HOH . H 5 HOH B 50 350 34 HOH HOH . H 5 HOH B 51 351 231 HOH HOH . H 5 HOH B 52 352 203 HOH HOH . H 5 HOH B 53 353 225 HOH HOH . H 5 HOH B 54 354 125 HOH HOH . H 5 HOH B 55 355 97 HOH HOH . H 5 HOH B 56 356 53 HOH HOH . H 5 HOH B 57 357 115 HOH HOH . H 5 HOH B 58 358 41 HOH HOH . H 5 HOH B 59 359 213 HOH HOH . H 5 HOH B 60 360 10 HOH HOH . H 5 HOH B 61 361 150 HOH HOH . H 5 HOH B 62 362 67 HOH HOH . H 5 HOH B 63 363 14 HOH HOH . H 5 HOH B 64 364 259 HOH HOH . H 5 HOH B 65 365 135 HOH HOH . H 5 HOH B 66 366 211 HOH HOH . H 5 HOH B 67 367 56 HOH HOH . H 5 HOH B 68 368 239 HOH HOH . H 5 HOH B 69 369 70 HOH HOH . H 5 HOH B 70 370 164 HOH HOH . H 5 HOH B 71 371 184 HOH HOH . H 5 HOH B 72 372 63 HOH HOH . H 5 HOH B 73 373 261 HOH HOH . H 5 HOH B 74 374 176 HOH HOH . H 5 HOH B 75 375 28 HOH HOH . H 5 HOH B 76 376 58 HOH HOH . H 5 HOH B 77 377 95 HOH HOH . H 5 HOH B 78 378 198 HOH HOH . H 5 HOH B 79 379 23 HOH HOH . H 5 HOH B 80 380 124 HOH HOH . H 5 HOH B 81 381 85 HOH HOH . H 5 HOH B 82 382 168 HOH HOH . H 5 HOH B 83 383 222 HOH HOH . H 5 HOH B 84 384 240 HOH HOH . H 5 HOH B 85 385 25 HOH HOH . H 5 HOH B 86 386 50 HOH HOH . H 5 HOH B 87 387 38 HOH HOH . H 5 HOH B 88 388 153 HOH HOH . H 5 HOH B 89 389 137 HOH HOH . H 5 HOH B 90 390 114 HOH HOH . H 5 HOH B 91 391 35 HOH HOH . H 5 HOH B 92 392 54 HOH HOH . H 5 HOH B 93 393 244 HOH HOH . H 5 HOH B 94 394 243 HOH HOH . H 5 HOH B 95 395 247 HOH HOH . H 5 HOH B 96 396 252 HOH HOH . H 5 HOH B 97 397 119 HOH HOH . H 5 HOH B 98 398 159 HOH HOH . H 5 HOH B 99 399 256 HOH HOH . H 5 HOH B 100 400 141 HOH HOH . H 5 HOH B 101 401 143 HOH HOH . H 5 HOH B 102 402 260 HOH HOH . H 5 HOH B 103 403 51 HOH HOH . H 5 HOH B 104 404 160 HOH HOH . H 5 HOH B 105 405 249 HOH HOH . H 5 HOH B 106 406 155 HOH HOH . H 5 HOH B 107 407 201 HOH HOH . H 5 HOH B 108 408 81 HOH HOH . H 5 HOH B 109 409 238 HOH HOH . H 5 HOH B 110 410 148 HOH HOH . H 5 HOH B 111 411 265 HOH HOH . H 5 HOH B 112 412 253 HOH HOH . H 5 HOH B 113 413 241 HOH HOH . H 5 HOH B 114 414 171 HOH HOH . H 5 HOH B 115 415 118 HOH HOH . H 5 HOH B 116 416 192 HOH HOH . H 5 HOH B 117 417 186 HOH HOH . H 5 HOH B 118 418 187 HOH HOH . H 5 HOH B 119 419 140 HOH HOH . H 5 HOH B 120 420 251 HOH HOH . H 5 HOH B 121 421 214 HOH HOH . H 5 HOH B 122 422 158 HOH HOH . H 5 HOH B 123 423 232 HOH HOH . H 5 HOH B 124 424 138 HOH HOH . H 5 HOH B 125 425 179 HOH HOH . H 5 HOH B 126 426 42 HOH HOH . H 5 HOH B 127 427 183 HOH HOH . H 5 HOH B 128 428 145 HOH HOH . H 5 HOH B 129 429 233 HOH HOH . H 5 HOH B 130 430 199 HOH HOH . H 5 HOH B 131 431 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 3 -10.259 -1.271 -22.088 1 21.77 ? N NO3 202 A 1 HETATM 2 O O1 NO3 . . . D 3 -11.071 -1.747 -22.935 1 21.02 ? O1 NO3 202 A 1 HETATM 3 O O2 NO3 . . . D 3 -10.583 -0.298 -21.349 1 22.85 ? O2 NO3 202 A 1 HETATM 4 O O3 NO3 . . . D 3 -9.109 -1.771 -21.969 1 24.07 ? O3 NO3 202 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #