data_5KPM
#
_model_server_result.job_id            d2vPNGXvzzeBG_XhLlWBGw 
_model_server_result.datetime_utc      '2024-12-27 02:25:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5kpm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    5KPM 
#
_exptl.entry_id    5KPM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              377.522 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4~{S})-3-(2,2-dimethylpropyl)-4,7,7-trimethyl-4-phenyl-2,6,8,9-tetrahydropyrazolo[3,4-b]quinolin-5-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         79.14 
_cell.angle_beta          76.72 
_cell.angle_gamma         88.89 
_cell.entry_id            5KPM 
_cell.length_a            63.976 
_cell.length_b            67.489 
_cell.length_c            67.632 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5KPM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 219 A SER 215 1_555 A N PTR 220 A PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C PTR 220 A PTR 216 1_555 A N ILE 221 A ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C SER 219 B SER 215 1_555 B N PTR 220 B PTR 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 B C PTR 220 B PTR 216 1_555 B N ILE 221 B ILE 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C24 H31 N3 O' 
_chem_comp.formula_weight    377.522 
_chem_comp.id                6VM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4~{S})-3-(2,2-dimethylpropyl)-4,7,7-trimethyl-4-phenyl-2,6,8,9-tetrahydropyrazolo[3,4-b]quinolin-5-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 C11 6VM sing 1 n n 
C13 C11 6VM sing 2 n n 
C14 C11 6VM sing 3 n n 
C14 C7 6VM sing 4 n n 
C11 C10 6VM sing 5 n n 
N2 C7 6VM sing 6 n n 
N2 C6 6VM sing 7 n n 
C7 C8 6VM doub 8 n n 
C10 C9 6VM sing 9 n n 
N1 C6 6VM doub 10 n y 
N1 N 6VM sing 11 n y 
C6 C23 6VM sing 12 n y 
C8 C9 6VM sing 13 n n 
C8 C15 6VM sing 14 n n 
C9 O 6VM doub 15 n n 
N C5 6VM sing 16 n y 
C23 C15 6VM sing 17 n n 
C23 C5 6VM doub 18 n y 
C15 C29 6VM sing 19 n n 
C15 C30 6VM sing 20 n n 
C5 C4 6VM sing 21 n n 
C28 C30 6VM doub 22 n y 
C28 C27 6VM sing 23 n y 
C30 C24 6VM sing 24 n y 
C4 C1 6VM sing 25 n n 
C27 C26 6VM doub 26 n y 
C3 C1 6VM sing 27 n n 
C24 C25 6VM doub 28 n y 
C1 C2 6VM sing 29 n n 
C1 C 6VM sing 30 n n 
C26 C25 6VM sing 31 n y 
C2 H1 6VM sing 32 n n 
C2 H2 6VM sing 33 n n 
C2 H3 6VM sing 34 n n 
C3 H4 6VM sing 35 n n 
C3 H5 6VM sing 36 n n 
C3 H6 6VM sing 37 n n 
C4 H7 6VM sing 38 n n 
C4 H8 6VM sing 39 n n 
C12 H9 6VM sing 40 n n 
C12 H10 6VM sing 41 n n 
C12 H11 6VM sing 42 n n 
C13 H12 6VM sing 43 n n 
C13 H13 6VM sing 44 n n 
C13 H14 6VM sing 45 n n 
C14 H15 6VM sing 46 n n 
C14 H16 6VM sing 47 n n 
C24 H17 6VM sing 48 n n 
C25 H18 6VM sing 49 n n 
C26 H19 6VM sing 50 n n 
C27 H20 6VM sing 51 n n 
C10 H22 6VM sing 52 n n 
C10 H23 6VM sing 53 n n 
C29 H24 6VM sing 54 n n 
C29 H25 6VM sing 55 n n 
C29 H26 6VM sing 56 n n 
C28 H27 6VM sing 57 n n 
C H28 6VM sing 58 n n 
C H29 6VM sing 59 n n 
C H30 6VM sing 60 n n 
N H31 6VM sing 61 n n 
N2 H21 6VM sing 62 n n 
#
_atom_sites.entry_id                     5KPM 
_atom_sites.fract_transf_matrix[1][1]    0.015631 
_atom_sites.fract_transf_matrix[1][2]    -0.000301 
_atom_sites.fract_transf_matrix[1][3]    -0.003698 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01482 
_atom_sites.fract_transf_matrix[2][3]    -0.002853 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6VM A 1 500 500 6VM 373 . 
D 2 6VM B 1 500 500 6VM 373 . 
E 3 HOH A 1 601 49 HOH HOH . 
E 3 HOH A 2 602 22 HOH HOH . 
E 3 HOH A 3 603 43 HOH HOH . 
E 3 HOH A 4 604 63 HOH HOH . 
E 3 HOH A 5 605 53 HOH HOH . 
E 3 HOH A 6 606 54 HOH HOH . 
E 3 HOH A 7 607 16 HOH HOH . 
E 3 HOH A 8 608 57 HOH HOH . 
E 3 HOH A 9 609 48 HOH HOH . 
E 3 HOH A 10 610 34 HOH HOH . 
E 3 HOH A 11 611 28 HOH HOH . 
E 3 HOH A 12 612 6 HOH HOH . 
E 3 HOH A 13 613 46 HOH HOH . 
E 3 HOH A 14 614 38 HOH HOH . 
E 3 HOH A 15 615 50 HOH HOH . 
E 3 HOH A 16 616 29 HOH HOH . 
E 3 HOH A 17 617 9 HOH HOH . 
E 3 HOH A 18 618 55 HOH HOH . 
E 3 HOH A 19 619 20 HOH HOH . 
E 3 HOH A 20 620 15 HOH HOH . 
E 3 HOH A 21 621 18 HOH HOH . 
E 3 HOH A 22 622 7 HOH HOH . 
E 3 HOH A 23 623 3 HOH HOH . 
E 3 HOH A 24 624 5 HOH HOH . 
E 3 HOH A 25 625 13 HOH HOH . 
E 3 HOH A 26 626 37 HOH HOH . 
E 3 HOH A 27 627 25 HOH HOH . 
E 3 HOH A 28 628 60 HOH HOH . 
E 3 HOH A 29 629 4 HOH HOH . 
E 3 HOH A 30 630 47 HOH HOH . 
E 3 HOH A 31 631 24 HOH HOH . 
F 3 HOH B 1 601 11 HOH HOH . 
F 3 HOH B 2 602 27 HOH HOH . 
F 3 HOH B 3 603 32 HOH HOH . 
F 3 HOH B 4 604 19 HOH HOH . 
F 3 HOH B 5 605 21 HOH HOH . 
F 3 HOH B 6 606 45 HOH HOH . 
F 3 HOH B 7 607 12 HOH HOH . 
F 3 HOH B 8 608 35 HOH HOH . 
F 3 HOH B 9 609 30 HOH HOH . 
F 3 HOH B 10 610 31 HOH HOH . 
F 3 HOH B 11 611 41 HOH HOH . 
F 3 HOH B 12 612 40 HOH HOH . 
F 3 HOH B 13 613 58 HOH HOH . 
F 3 HOH B 14 614 17 HOH HOH . 
F 3 HOH B 15 615 1 HOH HOH . 
F 3 HOH B 16 616 2 HOH HOH . 
F 3 HOH B 17 617 56 HOH HOH . 
F 3 HOH B 18 618 62 HOH HOH . 
F 3 HOH B 19 619 51 HOH HOH . 
F 3 HOH B 20 620 26 HOH HOH . 
F 3 HOH B 21 621 14 HOH HOH . 
F 3 HOH B 22 622 61 HOH HOH . 
F 3 HOH B 23 623 33 HOH HOH . 
F 3 HOH B 24 624 10 HOH HOH . 
F 3 HOH B 25 625 8 HOH HOH . 
F 3 HOH B 26 626 44 HOH HOH . 
F 3 HOH B 27 627 39 HOH HOH . 
F 3 HOH B 28 628 23 HOH HOH . 
F 3 HOH B 29 629 59 HOH HOH . 
F 3 HOH B 30 630 52 HOH HOH . 
F 3 HOH B 31 631 42 HOH HOH . 
F 3 HOH B 32 632 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 6VM . . . D 2 13.799 21.321 19.917 1 44.26 ? C1 6VM 500 B 1 
HETATM 2 C C2 6VM . . . D 2 14.485 20.958 18.622 1 47.29 ? C2 6VM 500 B 1 
HETATM 3 C C3 6VM . . . D 2 14.812 22.157 20.673 1 46.35 ? C3 6VM 500 B 1 
HETATM 4 C C4 6VM . . . D 2 12.441 21.972 19.69 1 44.66 ? C4 6VM 500 B 1 
HETATM 5 C C5 6VM . . . D 2 12.45 23.364 19.146 1 45.94 ? C5 6VM 500 B 1 
HETATM 6 C C6 6VM . . . D 2 12.088 25.269 17.841 1 49.34 ? C6 6VM 500 B 1 
HETATM 7 C C12 6VM . . . D 2 9.394 26.869 12.698 1 72.95 ? C12 6VM 500 B 1 
HETATM 8 C C13 6VM . . . D 2 8.172 25.854 14.619 1 67.11 ? C13 6VM 500 B 1 
HETATM 9 C C14 6VM . . . D 2 10.635 26.493 14.727 1 65.94 ? C14 6VM 500 B 1 
HETATM 10 C C24 6VM . . . D 2 11.625 20.651 16.234 1 50.18 ? C24 6VM 500 B 1 
HETATM 11 C C25 6VM . . . D 2 12.494 19.709 15.668 1 47.94 ? C25 6VM 500 B 1 
HETATM 12 C C26 6VM . . . D 2 13.686 20.132 15.045 1 47.08 ? C26 6VM 500 B 1 
HETATM 13 C C27 6VM . . . D 2 14.02 21.501 14.975 1 47.76 ? C27 6VM 500 B 1 
HETATM 14 O O 6VM . . . D 2 9.438 22.462 14.426 1 81.18 ? O 6VM 500 B 1 
HETATM 15 C C9 6VM . . . D 2 9.944 23.585 14.507 1 66.45 ? C9 6VM 500 B 1 
HETATM 16 C C8 6VM . . . D 2 10.674 24.073 15.721 1 60.85 ? C8 6VM 500 B 1 
HETATM 17 C C7 6VM . . . D 2 11.028 25.522 15.813 1 57.29 ? C7 6VM 500 B 1 
HETATM 18 C C11 6VM . . . D 2 9.511 25.917 13.867 1 67.77 ? C11 6VM 500 B 1 
HETATM 19 C C10 6VM . . . D 2 9.922 24.545 13.347 1 61.69 ? C10 6VM 500 B 1 
HETATM 20 C C15 6VM . . . D 2 11.06 23.107 16.794 1 55.77 ? C15 6VM 500 B 1 
HETATM 21 C C29 6VM . . . D 2 9.709 22.686 17.4 1 59.01 ? C29 6VM 500 B 1 
HETATM 22 C C30 6VM . . . D 2 11.945 22.037 16.177 1 51.66 ? C30 6VM 500 B 1 
HETATM 23 C C28 6VM . . . D 2 13.156 22.455 15.543 1 45.96 ? C28 6VM 500 B 1 
HETATM 24 C C23 6VM . . . D 2 11.824 23.837 17.883 1 52.51 ? C23 6VM 500 B 1 
HETATM 25 C C 6VM . . . D 2 13.491 20.062 20.706 1 43.69 ? C 6VM 500 B 1 
HETATM 26 N N 6VM . . . D 2 12.97 24.465 19.698 1 47.05 ? N 6VM 500 B 1 
HETATM 27 N N1 6VM . . . D 2 12.796 25.638 18.922 1 49.03 ? N1 6VM 500 B 1 
HETATM 28 N N2 6VM . . . D 2 11.691 26.025 16.839 1 51.84 ? N2 6VM 500 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#