data_5KPR # _model_server_result.job_id eC_MnWkeDjkS_WBeqZz-RQ _model_server_result.datetime_utc '2024-10-11 19:21:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5kpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5KPR # _exptl.entry_id 5KPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.235 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PANTOTHENOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5KPR _cell.length_a 98.965 _cell.length_b 98.965 _cell.length_c 68.783 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5KPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -45.855333 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 401 1_555 C O3G ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc2 B MG MG . A MG 401 1_555 C O2B ANP . A ANP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 B MG MG . A MG 401 1_555 F O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc4 B MG MG . A MG 401 1_555 F O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc5 B MG MG . A MG 401 1_555 F O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc6 B MG MG . A MG 401 1_555 F O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'C9 H17 N O5' _chem_comp.formula_weight 219.235 _chem_comp.id PAU _chem_comp.mon_nstd_flag . _chem_comp.name 'PANTOTHENOIC ACID' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms N-[(2R)-2,4-DIHYDROXY-3,3-DIMETHYLBUTANOYL]-BETA-ALANINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 PAU sing 296 n n O2 HO PAU sing 297 n n C1 C2 PAU sing 298 n n C1 C3 PAU sing 299 n n C1 C4 PAU sing 300 n n C1 C5 PAU sing 301 n n C2 H21 PAU sing 302 n n C2 H22 PAU sing 303 n n C3 H31 PAU sing 304 n n C3 H32 PAU sing 305 n n C3 H33 PAU sing 306 n n C4 H41 PAU sing 307 n n C4 H42 PAU sing 308 n n C4 H43 PAU sing 309 n n C5 O5' PAU sing 310 n n C5 C6 PAU sing 311 n n C5 H5 PAU sing 312 n n O5' H5' PAU sing 313 n n C6 O6' PAU doub 314 n n C6 N PAU sing 315 n n N C8 PAU sing 316 n n N H PAU sing 317 n n C8 C9 PAU sing 318 n n C8 H81 PAU sing 319 n n C8 H82 PAU sing 320 n n C9 C PAU sing 321 n n C9 H91 PAU sing 322 n n C9 H92 PAU sing 323 n n C OXT PAU sing 324 n n C O PAU doub 325 n n OXT HXT PAU sing 326 n n # _atom_sites.entry_id 5KPR _atom_sites.fract_transf_matrix[1][1] 0.010105 _atom_sites.fract_transf_matrix[1][2] 0.005834 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011668 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014538 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 3 ANP A 1 402 501 ANP ANP . D 4 EDO A 1 403 3 EDO EDO . E 5 PAU A 1 404 1 PAU PAU . F 6 HOH A 1 501 18 HOH HOH . F 6 HOH A 2 502 70 HOH HOH . F 6 HOH A 3 503 106 HOH HOH . F 6 HOH A 4 504 121 HOH HOH . F 6 HOH A 5 505 138 HOH HOH . F 6 HOH A 6 506 99 HOH HOH . F 6 HOH A 7 507 50 HOH HOH . F 6 HOH A 8 508 81 HOH HOH . F 6 HOH A 9 509 33 HOH HOH . F 6 HOH A 10 510 104 HOH HOH . F 6 HOH A 11 511 57 HOH HOH . F 6 HOH A 12 512 78 HOH HOH . F 6 HOH A 13 513 14 HOH HOH . F 6 HOH A 14 514 124 HOH HOH . F 6 HOH A 15 515 69 HOH HOH . F 6 HOH A 16 516 55 HOH HOH . F 6 HOH A 17 517 125 HOH HOH . F 6 HOH A 18 518 103 HOH HOH . F 6 HOH A 19 519 36 HOH HOH . F 6 HOH A 20 520 79 HOH HOH . F 6 HOH A 21 521 2 HOH HOH . F 6 HOH A 22 522 116 HOH HOH . F 6 HOH A 23 523 38 HOH HOH . F 6 HOH A 24 524 91 HOH HOH . F 6 HOH A 25 525 126 HOH HOH . F 6 HOH A 26 526 86 HOH HOH . F 6 HOH A 27 527 107 HOH HOH . F 6 HOH A 28 528 117 HOH HOH . F 6 HOH A 29 529 7 HOH HOH . F 6 HOH A 30 530 23 HOH HOH . F 6 HOH A 31 531 34 HOH HOH . F 6 HOH A 32 532 31 HOH HOH . F 6 HOH A 33 533 35 HOH HOH . F 6 HOH A 34 534 46 HOH HOH . F 6 HOH A 35 535 9 HOH HOH . F 6 HOH A 36 536 123 HOH HOH . F 6 HOH A 37 537 72 HOH HOH . F 6 HOH A 38 538 45 HOH HOH . F 6 HOH A 39 539 114 HOH HOH . F 6 HOH A 40 540 142 HOH HOH . F 6 HOH A 41 541 157 HOH HOH . F 6 HOH A 42 542 90 HOH HOH . F 6 HOH A 43 543 5 HOH HOH . F 6 HOH A 44 544 12 HOH HOH . F 6 HOH A 45 545 49 HOH HOH . F 6 HOH A 46 546 65 HOH HOH . F 6 HOH A 47 547 101 HOH HOH . F 6 HOH A 48 548 83 HOH HOH . F 6 HOH A 49 549 88 HOH HOH . F 6 HOH A 50 550 118 HOH HOH . F 6 HOH A 51 551 87 HOH HOH . F 6 HOH A 52 552 110 HOH HOH . F 6 HOH A 53 553 1 HOH HOH . F 6 HOH A 54 554 61 HOH HOH . F 6 HOH A 55 555 112 HOH HOH . F 6 HOH A 56 556 54 HOH HOH . F 6 HOH A 57 557 109 HOH HOH . F 6 HOH A 58 558 13 HOH HOH . F 6 HOH A 59 559 4 HOH HOH . F 6 HOH A 60 560 149 HOH HOH . F 6 HOH A 61 561 158 HOH HOH . F 6 HOH A 62 562 73 HOH HOH . F 6 HOH A 63 563 52 HOH HOH . F 6 HOH A 64 564 97 HOH HOH . F 6 HOH A 65 565 6 HOH HOH . F 6 HOH A 66 566 44 HOH HOH . F 6 HOH A 67 567 27 HOH HOH . F 6 HOH A 68 568 128 HOH HOH . F 6 HOH A 69 569 144 HOH HOH . F 6 HOH A 70 570 17 HOH HOH . F 6 HOH A 71 571 10 HOH HOH . F 6 HOH A 72 572 130 HOH HOH . F 6 HOH A 73 573 66 HOH HOH . F 6 HOH A 74 574 71 HOH HOH . F 6 HOH A 75 575 141 HOH HOH . F 6 HOH A 76 576 28 HOH HOH . F 6 HOH A 77 577 21 HOH HOH . F 6 HOH A 78 578 42 HOH HOH . F 6 HOH A 79 579 132 HOH HOH . F 6 HOH A 80 580 80 HOH HOH . F 6 HOH A 81 581 3 HOH HOH . F 6 HOH A 82 582 25 HOH HOH . F 6 HOH A 83 583 95 HOH HOH . F 6 HOH A 84 584 40 HOH HOH . F 6 HOH A 85 585 122 HOH HOH . F 6 HOH A 86 586 19 HOH HOH . F 6 HOH A 87 587 74 HOH HOH . F 6 HOH A 88 588 108 HOH HOH . F 6 HOH A 89 589 56 HOH HOH . F 6 HOH A 90 590 20 HOH HOH . F 6 HOH A 91 591 105 HOH HOH . F 6 HOH A 92 592 98 HOH HOH . F 6 HOH A 93 593 100 HOH HOH . F 6 HOH A 94 594 11 HOH HOH . F 6 HOH A 95 595 77 HOH HOH . F 6 HOH A 96 596 137 HOH HOH . F 6 HOH A 97 597 29 HOH HOH . F 6 HOH A 98 598 76 HOH HOH . F 6 HOH A 99 599 153 HOH HOH . F 6 HOH A 100 600 41 HOH HOH . F 6 HOH A 101 601 59 HOH HOH . F 6 HOH A 102 602 62 HOH HOH . F 6 HOH A 103 603 8 HOH HOH . F 6 HOH A 104 604 134 HOH HOH . F 6 HOH A 105 605 156 HOH HOH . F 6 HOH A 106 606 53 HOH HOH . F 6 HOH A 107 607 94 HOH HOH . F 6 HOH A 108 608 60 HOH HOH . F 6 HOH A 109 609 16 HOH HOH . F 6 HOH A 110 610 39 HOH HOH . F 6 HOH A 111 611 30 HOH HOH . F 6 HOH A 112 612 51 HOH HOH . F 6 HOH A 113 613 139 HOH HOH . F 6 HOH A 114 614 32 HOH HOH . F 6 HOH A 115 615 15 HOH HOH . F 6 HOH A 116 616 133 HOH HOH . F 6 HOH A 117 617 115 HOH HOH . F 6 HOH A 118 618 119 HOH HOH . F 6 HOH A 119 619 154 HOH HOH . F 6 HOH A 120 620 85 HOH HOH . F 6 HOH A 121 621 84 HOH HOH . F 6 HOH A 122 622 37 HOH HOH . F 6 HOH A 123 623 58 HOH HOH . F 6 HOH A 124 624 43 HOH HOH . F 6 HOH A 125 625 159 HOH HOH . F 6 HOH A 126 626 120 HOH HOH . F 6 HOH A 127 627 22 HOH HOH . F 6 HOH A 128 628 67 HOH HOH . F 6 HOH A 129 629 75 HOH HOH . F 6 HOH A 130 630 63 HOH HOH . F 6 HOH A 131 631 145 HOH HOH . F 6 HOH A 132 632 64 HOH HOH . F 6 HOH A 133 633 89 HOH HOH . F 6 HOH A 134 634 136 HOH HOH . F 6 HOH A 135 635 131 HOH HOH . F 6 HOH A 136 636 68 HOH HOH . F 6 HOH A 137 637 147 HOH HOH . F 6 HOH A 138 638 162 HOH HOH . F 6 HOH A 139 639 151 HOH HOH . F 6 HOH A 140 640 24 HOH HOH . F 6 HOH A 141 641 143 HOH HOH . F 6 HOH A 142 642 92 HOH HOH . F 6 HOH A 143 643 129 HOH HOH . F 6 HOH A 144 644 93 HOH HOH . F 6 HOH A 145 645 148 HOH HOH . F 6 HOH A 146 646 102 HOH HOH . F 6 HOH A 147 647 150 HOH HOH . F 6 HOH A 148 648 127 HOH HOH . F 6 HOH A 149 649 155 HOH HOH . F 6 HOH A 150 650 48 HOH HOH . F 6 HOH A 151 651 160 HOH HOH . F 6 HOH A 152 652 152 HOH HOH . F 6 HOH A 153 653 26 HOH HOH . F 6 HOH A 154 654 135 HOH HOH . F 6 HOH A 155 655 113 HOH HOH . F 6 HOH A 156 656 146 HOH HOH . F 6 HOH A 157 657 161 HOH HOH . F 6 HOH A 158 658 82 HOH HOH . F 6 HOH A 159 659 111 HOH HOH . F 6 HOH A 160 660 140 HOH HOH . F 6 HOH A 161 661 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PAU . . . E 5 29.278 -21.884 -15.446 1 37.58 ? O2 PAU 404 A 1 HETATM 2 C C1 PAU . . . E 5 28.671 -20.102 -16.943 1 32.18 ? C1 PAU 404 A 1 HETATM 3 C C2 PAU . . . E 5 29.592 -21.267 -16.656 1 33.08 ? C2 PAU 404 A 1 HETATM 4 C C3 PAU . . . E 5 28.945 -19.021 -15.915 1 33.35 ? C3 PAU 404 A 1 HETATM 5 C C4 PAU . . . E 5 28.976 -19.565 -18.314 1 30.36 ? C4 PAU 404 A 1 HETATM 6 C C5 PAU . . . E 5 27.191 -20.532 -16.867 1 31.72 ? C5 PAU 404 A 1 HETATM 7 O O5' PAU . . . E 5 26.359 -19.427 -17.063 1 30.19 ? O5' PAU 404 A 1 HETATM 8 C C6 PAU . . . E 5 26.729 -21.591 -17.862 1 34.05 ? C6 PAU 404 A 1 HETATM 9 O O6' PAU . . . E 5 27.112 -22.75 -17.791 1 35.96 ? O6' PAU 404 A 1 HETATM 10 N N PAU . . . E 5 25.798 -21.204 -18.906 1 30.31 ? N PAU 404 A 1 HETATM 11 C C8 PAU . . . E 5 25.328 -22.189 -19.885 1 31.27 ? C8 PAU 404 A 1 HETATM 12 C C9 PAU . . . E 5 26.29 -22.272 -21.048 1 32.86 ? C9 PAU 404 A 1 HETATM 13 C C PAU . . . E 5 25.856 -23.41 -21.939 1 37.46 ? C PAU 404 A 1 HETATM 14 O OXT PAU . . . E 5 26.191 -24.585 -21.654 1 37.56 ? OXT PAU 404 A 1 HETATM 15 O O PAU . . . E 5 25.156 -23.189 -22.969 1 39.7 ? O PAU 404 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 15 #